AndreaBozzo/ceres-open-data-index huggingface dataset:
CSIRO Dawn to 2100 SRESA1B vas - GCM Northward wind near surface datasets 1850 to 2100 using the SRESA1B Scenario

The CSIRO Dawn-2100 archive contains datasets for atmospheric, land and oceanographic variables for the approximate period 1850 - 2100 (dependent on model). These have been created through the concatenation of 20th century (20C3M) and other scenario (currently SRESA1B or SRESA2) data from a number of the 25 differant global climate models (GCM) from various countries. The SRESA1B_vas dataset contains the Northward wind near surface variable for various GCM's and runs (multiple runs being averaged to a single file if existing) under the SRESA1B scenario (SRESA1B emissions 2001 to 2100, then constant GHG 720ppm). 19 GCM models are available with data for variables being in 12 month, annual and 4 seasons(DJF, MAM,JJA,SON) format with 36 files totaling 3.66 GB as Netcdf files. Available for internal use and analysis by CSIRO staff on the HPSC cherax.

Organization: CSIRO Marlin Data Catalogue
RV Investigator Voyage IN2022_V05 End of Voyage (EOV) Archive

This record describes the End of Voyage (EOV) data archive from the Marine National Facility (MNF) RV Investigator voyage IN2022_V05, titled "The tsunamigenic submarine landslides and deep-marine canyons of Australia’s Tasman Sea margin: Causes and Consequences." The voyage took place between May 28, 2022 and July 3, 2022 (AEST), departing from Hobart and returning to Brisbane.
For further information please refer to the voyage documentation links.
Instruments used and data collected include:
Regular measurements:
Lowered ADCP (LADCP), Acoustic Doppler Current Profiler (ADCP; 75, 150 KHz ), Greenhouse Gas Analysers (Picarro), Cloud Condensation Nuclei counter (CCN), Condensation Particle Counters (CPC), Disdrometer, Radon sensor, Scanning Mobility Particle Sizers (SMPS), CTD, Fisheries Echosounder (EK60, EK80), Multibeam Echosounder (EM710, EM122), Sub-bottom Profiler (SBP120), GPS Positioning System, Doppler Velocity Log, Thermosalinographs (TSG), Fluorometer, Oxygen Optode, Infrared Sea Surface Temperature Autonomous Radiometer (ISAR), pCO2, Gravimeter, Multiangle Absorption Photometer (MAAP), Ozone Sensor, Nephelometer, Atmospheric Temperature, umidity, Pressure, Wind and Rain sensors, Photosynthetically Active Radiation (PAR) sensor, Precision Infrared Radiometer (PIR), Precision Spectral Pyranometer (PSP), ITI Trawl Net, Starboard and Portside Radiometers, Air Sampler, Ultra Short BaseLine Underwater Positioning System (USBL), Weather Radar, Expendable Bathythermographs (XBTs), Wildlife Observations (seabirds, cetaceans and seals).
Voyage-specific measurements:
Piston Coring System, Gravity Coring System, Smith Mac Grab, Rock Dredges, Seismic, Core Argo floats, Deep Towed Camera, Video.
The archive for the IN2022_V05 EOV raw data is curated by the CSIRO National Collections and Marine Infrastructure (NCMI) Information and Data Centre (IDC) in Hobart, with a permanent archive at the CSIRO Data Access Portal (https://data.csiro.au/), providing access to voyage participants and processors of the data collected on the voyage.
All voyage documentation is available electronically to MNF support via the local network. Applications to access voyage documentation by non-CSIRO participants can be made via NCMI_DataLibrarians@csiro.au.

Organization: CSIRO Marlin Data Catalogue
Southern Surveyor Voyage SS 07/2005 Biological Overview

This biological overview for the Southern Surveyor voyage SS 07/2005. The voyage took place off the Western Australian Coast during July August 2005. This dataset has been partly processed and has not yet been archived within the CSIRO Marine and Atmospheric Research Data Centre in Hobart. Additional information regarding this dataset is contained in the cruise report for this voyage and/or the data processing report. On this cruise pigments and chlorophyll a were collected by Neale Johnston and later processed at CMAR, Hobart by Pru Bonham.

Organization: CSIRO Marlin Data Catalogue
Southern Surveyor Voyage SS 01/2007 ADCP Data

This dataset contains the Acoustic Doppler Current Profiler (ADCP) data collected on Southern Surveyor voyage SS 01/2007. The voyage took place in the Great Australian Bight from 24 February to 17 March 2007. This dataset will be processed and archived within the CSIRO Marine and Atmospheric Research Data Centre in Hobart. Additional information regarding this dataset is contained in the cruise report for this voyage and/or the data processing report (as available).

Organization: CSIRO Marlin Data Catalogue
Southern Surveyor Voyage SS 02/98 Underway Data

This dataset contains the processed Underway (UWY) data collected on Southern Surveyor voyage SS 02/98. The voyage took place in the Southern Ocean during 10-31 March 1998. This dataset has been processed and is archived within the CSIRO Marine and Atmospheric Research Data Centre in Hobart. Additional information regarding this dataset is contained in the cruise report for this voyage and/or the data processing report (as available). The standard Underway (=continuously recorded) dataset from a research voyage includes Navigation (NAV), Sounder, Thermosalinograph (TSG) and Meteorological (MET) data. NAV data includes GPS (Global Positioning System) measurements of latitude, longitude, ship's direction and speed. MET data includes atmospheric temperature, humidity and pressure, wind speed and direction, and incident radiation intensity. Data are recorded at or averaged over 5 minute intervals.

Organization: CSIRO Marlin Data Catalogue
Increased Production of Juvenile Pacific Oysters through Supplementary Feeding

The standard method for growing the early stages of juvenile Pacific oysters (Crassostrea gigas)is to hold them in systems called upwellers in land-based nurseries, with seawater being pumped through to provide the oysters with food particles. Growth rates of oysters cultured using this method were highly variable at Pipe Clay Lagoon, a major oyster nursery in Tasmania (Australia). Growth rates in 1996-1997 were less than one-third of the previous five seasons and significantly less than at another nursery. Trials were conducted at Pipe Clay Lagoon to assess whether oysters' growth rates could be improved by supplementing their natural diet with additional feed sources, including cultured microalgae, dried or concentrated microalgae and a yeast-based artificial diet. Across all trials, supplementary feeding (on average) increased the oysters' growth rate by 60%. Supplementary feeding was most effective when natural levels of food, especially microalgae, in the inflowing seawater were low. This data set includes inorganic nutrients, particulate matter and dissolved organic carbon, chlorophyll a, salinity, rainfall, temperature, fatty acid concentrations and composition, pigment concentrations and nutrient parameters and oyster growth rates at Pipe Clay Lagoon.

Organization: CSIRO Marlin Data Catalogue
RV Investigator Voyage IN2019_V05 End of Voyage (EOV) Archive

This record describes the End of Voyage (EOV) archive from the Marine National Facility (MNF) RV Investigator research voyage IN2019_V05, titled " Integrated Marine Observing System: monitoring of East Australian Current property transports at 27 degrees South." The voyage took place from Brisbane (QLD) to Brisbane between September 9 and September 29, 2019 (AEST).
For further information please refer to the voyage documentation links below.
Instruments used and data collected include:
Regular measurements:
Acoustic Doppler Current Profiler (ADCP; 75, 150 KHz ), Lowered ADCP (LADCP), Disdrometer, Multibeam Echosounder (EM710, EM122), Sub-bottom Profiler (SBP120), Gravimeter, GPS Positioning System, Doppler Velocity Log, Atmospheric Temperature, Humidity, Pressure, Wind and Rain sensors, Photosynthetically Active Radiation (PAR) sensor, Precision Infrared Radiometer (PIR), Precision Spectral Pyranometer (PSP), Nephelometer, pCO2, Condensation Particle Counters (CPC), Cloud Condensation Nuclei counter (CCN), Multiangle Absorption Photometer (MAAP), Starboard and Portside Radiometers, Radon and Ozone sensors, Weather Radar, Greenhouse Gas Analysers (Picarro), Infrared Sea Surface Temperature Autonomous Radiometer (ISAR), Fluorometer, Oxygen optode, Thermosalinographs (TSG), CTD, Hydrochemistry, Expendable Bathythermographs (XBTs).
Voyage-specific measurements:
Bongo Net, Argo floats, Moorings.
The archive for the IN2019_V05 EOV raw data is curated by the CSIRO NCMI Information and Data Centre (IDC) in Hobart, with a permanent archive at the CSIRO Data Access Portal (DAP, https://data.csiro.au/dap/), providing access to participants and processors of the data collected in the voyage.
All voyage documentation is available electronically to MNF support via the local network. Access to voyage documentation for non-CSIRO participants can be made via NCMI_DataLibrarians@csiro.au.

Organization: CSIRO Marlin Data Catalogue
Great Barrier Reef , June 2002 , HPLC Pigment and Ocean Colour Data (AIMS cruise code LB0202)

This record contains data collected on the AIMS vessel RV Lady Basten between 5 and 13 June 2002. Parameters measured are the concentration of chlorophyll and carotenoid pigments and retrieved chlorophyll a estimate. 9 stations were sampled. This cruise was used primarily to validate ocean colour sensors MERIS, MODIS and SeaWIFS and the SST sensor AATSR. Samples were collected for pigments, total suspended solids (TSS) and absorption coefficient- dissolved and particulate.

Organization: CSIRO Marlin Data Catalogue
Franklin Voyage FR 03/95 Expendable Bathythermograph (XBT) Data

This dataset contains the processed Expendable Bathythermograph (XBT) data collected on Franklin voyage FR 03/95. The voyage took place in the east Indian Ocean during 1-24 April 1995. This dataset has been processed and is archived within the CSIRO Marine and Atmospheric Research Data Centre in Hobart. Additional information regarding this dataset is contained in the cruise report for this voyage and/or the data processing report (as available). XBT data typically comprises temperature and depth readings relayed to the surface at intervals of 0.1 seconds as the probe passes through the top few hundred metres of the ocean.

Organization: CSIRO Marlin Data Catalogue
Southern Surveyor Voyage SS 05/2008 ADCP Data

This dataset contains the Acoustic Doppler Current Profiler (ADCP) data collected on Southern Surveyor voyage SS 5/2008. The voyage took place in the Southern Ocean, 5 - 7 April 2008. This dataset has been processed and archived within the CSIRO Marine and Atmospheric Research Data Centre in Hobart. Additional information regarding this dataset is contained in the cruise report for this voyage and/or the data processing report (as available).

Organization: CSIRO Marlin Data Catalogue
Albatross Bay Penaeid Prawn Larval Abundance - Genus Level Counts 1986-1992

Prawn larval densities were calculated from stepped oblique bottom to surface plankton tows, deployed during monthly cruises carried out between March 1986 and April 1992, at twenty-one stations in Albatross Bay, Gulf of Carpentaria. Penaeid prawn counts were recorded to genus level (Penaeus spp.) for all observed larval stages.
Salinity-temperature profiles were also recorded during the cruise.

Organization: CSIRO Marlin Data Catalogue
RV Investigator Voyage IN2014_E02 SBP120 Sub-bottom Profiler Data

This record describes sub-bottom data collected on RV Investigator voyage IN2014_E02. The sea trial included two legs, both from Hobart to Hobart with Leg 1 between 28th of October to the 1st November and Leg 2 from the 1st November to the 6th November. 
The Kongsberg SBP120 (Sub bottom profiler) was used to acquire data throughout the voyage.
Data are stored in .raw raw and .seg segy formats at CSIRO Oceans and Atmosphere. There are 88 files totalling  6.72 GB of raw data in this dataset. 
Additional information regarding this dataset is contained in the GSM data acquisition and processing report.

Organization: CSIRO Marlin Data Catalogue
Great Barrier Reef, September 2007, HPLC Pigment and Ocean Colour Data

This record contains data collected on the vessel James Kirby between 19 and 26 September 2007 in the Great Barrier Reef. The data can be used for Ocean Colour sensor validation. Parameters measured are the concentration of chlorophyll and carotenoid pigments, the absorption coefficient for dissolved (CDOM), particulate (ap) and detrital or non-algal (ad) components of the water column and total suspended matter (TSM). 23 stations were sampled. The data was used primarily to validate ocean colour sensors MERIS, MODIS and SeaWIFs. CLW deployed instruments RAMSES, AC-9,and  Hydroscat.

Organization: CSIRO Marlin Data Catalogue
SS200803 - Fishery Spatial Closures Project - Pilot survey in the 60-mile closure for southern dogfish (GAB): Video Survey

Towed camera transects were conducted in the Great Australian Bight (GAB) and near St Helen's Hill seamount during the pilot survey for estimating the effectiveness of spatial closures for deepwater gulper sharks and associated fishery species. There are large gaps in ecological knowledge of gulper sharks which limit the effective design of area closures (e.g. optimising sizes and numbers) and assessment of their performance. The survey aimed to fill these gaps do this by characterising the habitats and ecosystem processes in 200-700 m depths that sustain key species, and commencing a process to determine the relevant aspects of species ecology. Primarily this will be (1) to measure the movement of fish within and to/ from a large closed area in the GAB with a tagging program, and (2) estimate the abundance of selected species in relation to habitat features (substructure within submarine canyons, escarpments and rocky banks, and adjacent water column features) with two independent, non-extractive photographic methods. This metadata record refers to the image data collected during the survey. 
The image annotations collected for this project will added to the Oracle data base BHIMAGE and the associated videos and still images have been archived as described in MarLIN record 14436 'Benthic Habitats Video Image Archive'.

Organization: CSIRO Marlin Data Catalogue
Gascoyne Voyage G 04/65 HYD Data)

This dataset contains the processed Hydrology or "Bottle Data" (HYD) data collected on Gascoyne cruise G 4/65. This voyage took place in the Tasman Sea off Sydney and Bass Strait region from 8/3/1965 and 22/3/1965. This dataset has been processed and is archived within the CSIRO Marine ResearchData Centre in Hobart.',

Organization: CSIRO Marlin Data Catalogue
Southern Surveyor Voyage SS 05/93 Single beam acoustic data

This data set contains Simrad EK500 single beam echosounder data at 38 and 120 kHz and Simrad EA500 single beam echosounder data at 12 kHz from the Southern Surveyor. The EK500 data is primarily for water column characterisation (fish stocks, microplankton distribution) and on occasions for seabed classification (particularly prior to the EM300 swath mapper being installed), while the EA500 data is primarily for bathymetric readings.

Organization: CSIRO Marlin Data Catalogue
Physical Clustering of the World's Oceans

Physical Clustering of the World's Oceans (based on data extracted from World Ocean Atlas 2013 version 2).
Data.
The physical regions are based on the observations of the World Ocean Atlas 2013 version 2 (WOA13v2*; https://www.nodc.noaa.gov/OC5/woa13/). 
We extracted the decadal annual means for nine variables. These variables included: Temperature (°C), Salinity (unitless), Density (kg/m3), Dissolved Oxygen (ml/l),  Apparent Oxygen Utilization (ml/l), Silicate (µmol/l), Phosphate (µmol/l), Density (kg/m^3) and Nitrate (µmol/l). The datasets for Temperature, Salinity and Dissolved oxygen were provided at 0.25° resolution. We therefore reprojected the remaining WOA13v2 datasets to the same projection by making each 1° cell in these datasets at 0.25° resolution, while assigning the original value to the four finer resolution cells. 
For the seafloor physical regions we included two additional dataset derived from GEBCO bathymetry data (https://www.gebco.net/). The first dataset was the bathymetry across the seafloor, this layer was re-projected to 0.25° resolution, were the cell values were based on the mean values of the finer scale GEBCO layer. We then computed the slope of depth based on the bathymetry raster using the ‘terrain’ function in the ‘raster’ package. 
Analysis.
We generated physical clusters for the globe at the surface (0m), 200m, 1000m and the seafloor. For the surface, 200m and 1000m regions, we extracted the single depth layers from the WOA13v2 datasets and generated a matrix which represented the sites by the variables. 
For the seafloor, we had to generate interpolated layers at the seafloor based on the WOA13v2 data. We did this by looking at the mean depth of the bathymetry data and undertaking a tri-linear (cubic) interpolation of the WOA13v2 data at that seafloor depth. We subsequently ran a tri-linear interpolation of the WOA13v2 for each variable and generated maps of seafloor environmental conditions. One these maps were generated we extracted each variable into a seafloor site by seafloor physical variable matrix. 
All four site by physical variables datasets (0, 200, 1000 and seafloor) were then scaled in an attempt to centre and normalise the data. 
For each of these four datasets we then fitted a k-means clustering model from 2 to 40 clusters and looked at the resulting model loglikelihood, AIC and BIC. We then selected the number of clusters at the point were the the log-likelihood converged (i.e. the point were additional centroids only gave a marginal increase in log-likelihood). 
The resulting cluster identity was then assigned to each site and used to generate maps of the physical clusters for each dataset. These rasters were then converted to shapefiles.

Boyer, T.P., J. I. Antonov, O. K. Baranova, C. Coleman, H. E. Garcia, A. Grodsky, D. R. Johnson, R. A. Locarnini, A. V. Mishonov, T.D. O'Brien, C.R. Paver, J.R. Reagan, D. Seidov, I. V. Smolyar, and M. M. Zweng, 2013: World Ocean Database 2013, NOAA Atlas NESDIS 72, S. Levitus, Ed., A. Mishonov, Technical Ed.; Silver Spring, MD, 209 pp., http://doi.org/10.7289/V5NZ85MT


Organization: CSIRO Marlin Data Catalogue
H.M.A.S. Diamantina Voyage Dm 4/73 Hydrology Data

This dataset contains the processed Hydrology (HYD) data collected on Diamantina voyage Dm 4/73. The voyage took place off the SW West Australia Coast, the Great Australian Bight and Southern Tasmanian Coast during September 1973. This dataset has been processed and is archived within the CSIRO Marine and Atmospheric Research Data Centre in Hobart. Additional information regarding this dataset is contained in the cruise report for this voyage and/or the data processing report (as available). Diamantina on-voyage hydrology data are typically obtained from water samples collected in Nansen bottles at various depths. Parameters measured normally comprise temperature, salinity, dissolved oxygen and inorganic phosphate.

Organization: CSIRO Marlin Data Catalogue
BEAGLE 2003, Leg 5, Cape Town (South Africa) - Fremantle (Australia), HPLC and Ocean Colour Data

The Japan Agency for Marine-Earth Sciences and Technology (JAMSTEC) sponsored this research cruise - a circumnavigation of the Southern hemisphere using the World Ocean Circulation Experiment (WOCE) Hydrographic Program (WHP) lines in the southern hemisphere to celebrate the 30th anniversary of its establishment. The research cruise was named "BEAGLE 2003" (Blue EArth GLobal Expedition 2003) and was carried out on the RV MIRAI. This is a subset of the Beagle 2003 data set and contains the HPLC pigment and particulate absorption coefficient data collected on leg 5, between Cape Town, South Africa and Fremantle, Australia from the 11 Dec 2003 to 20 Jan 2004. The data can be used for Ocean Colour sensor validation. Parameters measured on the leg are the concentration of chlorophyll and carotenoid pigments and the absorption coefficent for particulate (a/p) components of the water column. Samples were collected at 43 stations. The data was used primarily to validate ocean colour sensors MERIS, MODIS and SeaWIFs and the SST sensor AATSR. Samples were collected and analysed for pigments and absorption coefficient, particulate.

Organization: CSIRO Marlin Data Catalogue
Southern Surveyor Voyage SS2010_T03 ADCP Data

This dataset contains the Acoustic Doppler Current Profiler (ADCP) data collected on Southern Surveyor voyage SS2010_t03. The voyage took place on transit from Hobart to Sydney, 16th September to 21st September 2010. This dataset was processed and then archived within the CSIRO Marine and Atmospheric Research Data Centre in Hobart. NOTE Processing of ADCP data used a revised CODAS system resulting in a new data structure, please see attributes for the new netCDF file structure. Additional information regarding this dataset is contained in the cruise report for this voyage and/or the data processing report.

Organization: CSIRO Marlin Data Catalogue
RV Investigator Voyage IN2024_E01 End of Voyage (EOV) Archive

This record describes the End of Voyage (EOV) data archive from the Marine National Facility (MNF) RV Investigator voyage IN2024_E01, titled "Sea trials &amp; calibrations." The voyage took place between October 28, 2024 and November 07, 2024 (AEST), departing from Hobart and returning to Hobart.
For further information please refer to the voyage documentation links.
Instruments used and data collected include:
Regular measurements:
Acoustic Doppler Current Profiler (ADCP; 75, 150 KHz), CTD, Hydrochemistry, Expendable Bathythermographs (XBTs), Fisheries Echosounder (EK80), Multibeam Echosounder (EM712, EM124), Sub-bottom Profiler (SBP29), Gravimeter, GPS Positioning System, Doppler Velocity Log, Thermosalinographs (TSG), Fluorometer, Oxygen optode, Atmospheric Temperature, Humidity, Pressure, Wind and Rain sensors, Photosynthetically Active Radiation (PAR) sensor, Precision Infrared Radiometer (PIR), Precision Spectral Pyranometer (PSP), Starboard and Portside Radiometers
Voyage-specific measurements:
Deep Towed Camera (DTC)
The archive for the IN2024_E01 EOV raw data is curated by the CSIRO National Collections and Marine Infrastructure (NCMI) Information and Data Centre (IDC) in Hobart, with a permanent archive at the CSIRO Data Access Portal (https://data.csiro.au/), providing access to voyage participants and processors of the data collected on the voyage.
All voyage documentation is available electronically to MNF support via the local network. Applications to access voyage documentation by non-CSIRO participants can be made via data-requests-hf@csiro.au All processed data from this voyage are made publicly available through the MNF Data Trawler (in the related links)

Organization: CSIRO Marlin Data Catalogue
Soela Voyage SO 1/80 Hydrology Data

This dataset contains the processed Hydrology (HYD) data collected on Soela voyage SO 1/80. The voyage took place in waters off the Western Australian coast, Great Australian Bight, Tasmania and NSW coast during 10 January - 4 February 1980. This dataset has been processed and is archived within the CSIRO Marine and Atmospheric Research Data Centre in Hobart. Additional information regarding this dataset is contained in the cruise report for this voyage and/or the data processing report (as available). Soela on-voyage hydrology data are typically obtained from water samples collected in Niskin bottles at various depths. Parameters measured normally comprise temperature, salinity, dissolved oxygen, phosphate, nitrate, silicate, and nitrite.

Organization: CSIRO Marlin Data Catalogue