AndreaBozzo/ceres-open-data-index huggingface dataset:
[SUPERSEDED] An Estuarine Inventory for New South Wales, Australia 1984

This dataset has been superseded by https://metadata.imas.utas.edu.au/geonetwork/srv/eng/catalog.search#/metadata/5d62676f-63d6-4282-9b23-ba1aedfc4fdd (NSW Estuarine Macrophytes).

Fisheries oriented inventory that consists of tabular information and an atlas of estuarine wetlands describing 69 estuaries and embayments along the NSW (Australia) coast.

Tags: Australia, Benthic habitat, New South Wales
Organization: Australian Ocean Data Network
RETIRED: eReefs GBR4 DA Hydrodynamic SHOC model data

<strong>This sample dataset was decomissioned in May 2022, and is no longer available via the NCI THREDDS server.  Please contact the eReefs team if you need access to this data.</strong>

This is the eReefs GBR 4 km resolution Data Assimilating (DA) hydrodynamic SHOC model data. The Ensemble Optimal Interpolation (EnOI) system assimilaties a combination of temperature data from moorings (AIMS and GBROOS/IMOS), gliders (CSIRO and IMOS) and SST (GHRSST L3S from IMOS). This product is the first version of a reanalysis undertaken for the GBR4 grid. The DS system is run with a cycle length of 2 days, and assimilates temperature data that fall within a 6 hour window either side of the analysis time. The mean forecast error ranges from 0.4 degrees C in the "dry" season to 0.7 degrees C in the "wet" season

Organization: Australian Ocean Data Network
The Magnitude and Frequency of Combined Flow Bed Shear Stress as a Measure of Exposure on the Australian Continental Shelf

Benthic habitats on the continental shelf are strongly influenced by exposure to the effects of surface ocean waves, and tidal, wind and density driven ocean currents. These processes combine to induce a combined flow bed shear stress upon the seabed which can mobilise sediments or directly influence organisms disturbing the benthic environment. Output from a suite of numerical models predicting these oceanic processes have been utilised to compute the combined flow bed shear stresses over the entire Australian continental shelf for an 8-year period (March 1997- February 2005 inclusive). To quantify the relative influence of extreme or catastrophic combined flow bed shear stress events and more frequent events of smaller magnitude, three methods of classifying the oceanographic levels of exposure are presented: 
<ol>
<li>A spectral regionalisation method, </li>
<li>A method based on the shape of the probability distribution function, and </li>
<li>A method which assesses the balance between the amount of work a stress does on the seabed, and the frequency with which it occurs. </li>
</ol>

Significant relationships occur between the three regionalisation maps indicating seabed exposure to oceanographic processes and physical sediment properties (mean grain size and bulk carbonate content), and water depth, particularly when distinction is made between regions dominated by high-frequency (diurnal or semi-diurnal) events and low-frequency (synoptic or annual) events. It is concluded that both magnitude and frequency of combined-flow bed shear stresses must be considered when characterising the benthic environment. The regionalisation outputs of the Australian continental shelf presented in this study are expected to be of benefit to quantifying exposure of seabed habitats on the continental shelf to oceanographic processes in future habitat classification schemes for marine planning and policy procedures.

Tags: AU, Earth Sciences, External Publication, Published_External, Scientific Journal Paper, continental margins, model
Organization: Australian Ocean Data Network
Acoustic Zones of Australia

The goal of our study was to split the Australian maritime Exclusive Economic Zone (EEZ) into a set of smaller acoustic zones, whereby each zone is characterised by a set of environmental parameters that vary more across than within zones. The environmental parameters chosen reflect the hydroacoustic (e.g., water column sound speed profile), geoacoustic (e.g., sound speeds and absorption coefficients for compressional and shear waves), and bathymetric (i.e., seafloor depth and slope) parameters that directly affect the way in which sound propagates.  Mean zone parameters and shape files are available for download. The zones may be used to map, for example, underwater sound from commercial shipping within the entire Australian EEZ.

Tags: Noise, Non-split acoustic zones, Split acoustic zones
Organization: Australian Ocean Data Network
BRUVS (TM) - Fish and Benthic survey of Inshore Shoals : Rockingham Bay  2010-05-10 to 2010-05-13

The dataset comprises 224 individuals from 25 species of fishes, sharks, rays and sea snakes observed at around Inshore Shoals : Rockingham Bay  using 5 baited remote underwater video stations (BRUVS(TM)). 45 images were captured from these cameras.

Approximately 3500 of the best images from all BRUVS (TM) projects are stored in a reference library.

Data recorded concern:
- classification of the habitat in the field of view (topography, sediments, benthos)
- the identity of fish and CAABCODES
- their time of arrival
- their behaviour (8 categories, including feeding on the bait)
- their maturity (adult or juvenile)
- their relative abundance (as MaxN = the maximum number visible at one time, or distinguishable at different times as separate individuals e.g. much larger/smaller, male/female)
- the time elapsed before MaxN and feeding occurs.

A custom interface has been developed by AIMS staff, using Microsoft Access, for reading and analysis of BRUVS(TM) tapes.

Organization: Australian Ocean Data Network
Submerged banks in the Great Barrier Reef, Australia, greatly increase available coral reef habitat

Anthropogenic global ocean warming is predicted to cause bleaching of many near-sea-surface (NSS) coral reefs, placing increased importance on deeper reef habitats to maintain coral reef biodiversity and ecosystem function. However, the location and spatial extent of many deep reef habitats is poorly known. The question arises: how common are deep reef habitats in comparison with NSS reefs? We used a dataset from the Great Barrier Reef (GBR) to show that only about 39% of available seabed on submerged banks is capped by NSS coral reefs (16 110 km2); the other 61% of bank area (25 600 km2) is submerged at a mean depth of around 27 m and represents potential deep reef habitat that is spatially distributed along the GBR continental shelf in the same latitudinal distribution as NSS reefs. Out of 25 600 km2 of submerged bank area, predictive habitat modelling indicates that more than half (around 14 000 km2) is suitable habitat for coral communities.

<b>Citation:</b> Peter T. Harris, P. T., Bridge, T. C. L., Beaman, R. J., Webster, J. M., Nichol, S. L., and Brooke, B. P. 2013. Submerged banks in the Great Barrier Reef, Australia, greatly increase available coral reef habitat. – ICES Journal of Marine Science, 70: 284–293.
https://doi.org/10.1093/icesjms/fss165

Tags: AU-QLD, Earth Sciences, External Publication, Great Barrier Reef, Published_Internal, Scientific Journal Paper, benthic habitats, biodiversity, mesophotic, refugia, submerged banks
Organization: Australian Ocean Data Network
Lizard Island Salinity From 14 Aug 2010 To 20 Feb 2022

The 'Wireless Sensor Networks Facility' (formerly known as Facility for The Automated Intelligent Monitoring of Marine Systems (FAIMMS)), part of the Great Barrier Reef Ocean Observing System project (GBROOS), is a facility of the Australian 'Integrated Marine Observing System' (IMOS) project. This data set was collected by the Great Barrier Reef Wireless Sensor Network.

Organization: Australian Ocean Data Network
NESP MaC Project 1.33 - Application of environmental DNA to survey Bathurst Harbour Tasmania for the endangered Maugean skate, 2021-2022 (IMAS)

This record provides an overview of the NESP Marine and Coastal Hub emerging priorities study - "Application of environmental DNA to survey Bathurst Harbour Tasmania for the endangered Maugean skate". For specific data outputs from this project, please see child records associated with this metadata.

The Maugean skate (Zearaja maugeana) is listed as Endangered under Tasmania’s Threatened Species Protection Act and the Commonwealth Environmental Protection and Biodiversity Conservation Act 1999. Its known population is small (~3,000 individuals, Macquarie Harbour, 2016) and highly restricted, having only been recorded in two isolated estuaries: Bathurst Harbour and Macquarie Harbour in south-western/western Tasmania. This constitutes one of the most limited distributions of any known extant elasmobranch. 

Although the skate  was first discovered in Bathurst Harbour, most knowledge of the species stems from the Macquarie Harbour population. Only four individuals have been reported in Bathurst Harbour, with the last reported sighting in 1992. Environmental conditions in Macquarie Harbour have changed markedly since then due to anthropogenic activities in and around the estuary including historical mining, hydro-electric generation and alteration of natural river flows, and marine fish farming.

Previous research has shown clear signs of population stress and evidence of detrimental impacts of degraded environmental conditions on the Maugean Skate in Macquarie Harbour. Understanding the potential population status of the Maugean Skate in Bathurst Harbour will assist in determining conservation actions. This study used Environmental (e) DNA to determine the presence/absence of Maugean skate in Bathurst Harbour, strengthening the evidence base for effective conservation plans and specific recovery actions.

Outputs
• Maugean skate eDNA sampling data and inferred species distribution (presence/absence) [dataset]
• Final Project Report, including a short summary of recommendations for policy makers of key findings [written]

Tags: Bathurst Harbour, Maugean skate, National Environmental Science Program (NESP) Marine and Coastal Hub, Zearaja maugeana, eDNA, threatened species
Organization: Australian Ocean Data Network
BRUVS (TM) - Fish and Benthic survey of Darwin Harbour wrecks 2003-08-17 to 2003-08-28

The dataset comprises 2108 individuals from 100 species of fishes, sharks, rays and sea snakes observed at around Darwin Harbour wrecks using 72 baited remote underwater video stations (BRUVS(TM)). 409 images were captured from these cameras.

Approximately 3500 of the best images from all BRUVS (TM) projects are stored in a reference library.

Data recorded concern:
- classification of the habitat in the field of view (topography, sediments, benthos)
- the identity of fish and CAABCODES
- their time of arrival
- their behaviour (8 categories, including feeding on the bait)
- their maturity (adult or juvenile)
- their relative abundance (as MaxN = the maximum number visible at one time, or distinguishable at different times as separate individuals e.g. much larger/smaller, male/female)
- the time elapsed before MaxN and feeding occurs.

A custom interface has been developed by AIMS staff, using Microsoft Access, for reading and analysis of BRUVS(TM) tapes.

Organization: Australian Ocean Data Network
BRUVS (TM) - Fish and Benthic survey of Inshore Shoals : Cairns and Cardwell 2006-12-12 to 2006-12-21

The dataset comprises 569 individuals from 94 species of fishes, sharks, rays and sea snakes observed at around Inshore Shoals : Cairns and Cardwell using 19 baited remote underwater video stations (BRUVS(TM)). 238 images were captured from these cameras.

Approximately 3500 of the best images from all BRUVS (TM) projects are stored in a reference library.

Data recorded concern:
- classification of the habitat in the field of view (topography, sediments, benthos)
- the identity of fish and CAABCODES
- their time of arrival
- their behaviour (8 categories, including feeding on the bait)
- their maturity (adult or juvenile)
- their relative abundance (as MaxN = the maximum number visible at one time, or distinguishable at different times as separate individuals e.g. much larger/smaller, male/female)
- the time elapsed before MaxN and feeding occurs.

A custom interface has been developed by AIMS staff, using Microsoft Access, for reading and analysis of BRUVS(TM) tapes.

Organization: Australian Ocean Data Network
Sea urchin and macroalgal cover in the western Mediterranean

The data here presented shows the relationship between sea urchin numbers and algal cover in the Western Mediterranean. Data was collected in several underwater surveys using subdivided quadrats. The grazing effect of urchins on the macroalgal community was evaluated.

Tags: Arbacia lixula, Consumer-resource interactions, Paracentrotus lividus, Regime shifts
Organization: Australian Ocean Data Network
Baseline biogeochemical data from Australia’s continental margin links seabed sediments to water column characteristics

Surficial marine sediments are an important source of nutrients for productivity and biodiversity yet the biogeochemistry of these sediments is poorly known in Australia. Seabed samples were collected at &gt;350 locations in Australia’s western, northern and eastern continental margins during federal government surveys (2007-2014). Parameters analysed included measures of organic matter (OM) source (δ13C, δ15N and C:N-ratios), concentration (total organic carbon (%TOC) and surface area normalised TOC (OC:SA)) and bioavailability (chlorin indices, total reactive chlorins, total oxygen uptake, total sediment metabolism (TSM), sediment oxygen demand (SOD) and SOD and TSM normalised to TOC). The aim of this study is to summarise these biogeochemical ‘baseline’ data, and make contextualised inferences about processes that govern the observed concentrations.  The OM was mainly from marine sources and OC:SA broadly reflected water column productivity (MODIS). Approximately 40% of sediments were organic-poor by global standards reflecting seawater oligotrophy; ~12% were organic-rich due to benthic production, high water column productivity and pockmark formation. OM freshness varied due to pigment degradation in water columns and dilution with refractory OM in reworked sediments. δ15N values confirmed the importance of N2 fixation to Timor Sea productivity, and point to recycling of fixed nitrogen within food chains in Western Australia.

<b>Citation:</b> Radke Lynda, Nicholas Tony, Thompson Peter A., Li Jin, Raes Eric, Carey Matthew, Atkinson Ian, Huang Zhi, Trafford Janice, Nichol Scott (2017) Baseline biogeochemical data from Australia’s continental margin links seabed sediments to water column characteristics. <i>Marine and Freshwater Research</i> <b>68</b>, 1593-1617. 
https://doi.org/10.1071/MF16219

Tags: EARTH SCIENCES, Published_External, Trichodesmium, diazotroph, marine, geochemistry, seabed, sediments, organic carbon, particulate, totol nitrogen
Organization: Australian Ocean Data Network
Kinetics of hydrocarbon generation from the marine Ordovician Goldwyer Formation, Canning Basin, Western Australia

Pyrolysis and bulk kinetic studies were used to investigate the hydrocarbon generation potential and source rock facies variability of the marine organic-rich rocks from the Middle Ordovician (Darriwilian) Goldwyer Formation in the Canning Basin, Western Australia. Rock Eval pyrolysis results for the analysed immature to mid-mature calcareous mudstones imply that the upper Goldwyer Sequence I samples contain oil-prone Type I kerogen, while the lower Goldwyer Sequence III samples comprise on average Type II/III oil- and gas-prone kerogen. This is supported by the pyrolysis gas chromatography (Py-GC) results that show the presence of homogenous organofacies in the Goldwyer Sequence I that comprise aliphatic molecular signatures, possibly attributed to the selective preservation of the lipid fraction derived from <i>Gloeocapsomorpha prisca</i> (<i>G. prisca</i>). The heterogeneous organofacies of the Goldwyer Sequence III contains aromatic moieties that are present in similar abundance as the aliphatic compounds. The calcareous claystones of the Goldwyer Sequence I have the capacity to generate paraffinic oil with low wax contents, whereas those of the Goldwyer Sequence III have generative potential for paraffinic-naphthenic-aromatic (P-N-A) low wax oils and gas and condensate.

The temperature for hydrocarbon generation for the Type I kerogen, assuming a constant geological heating rate of 3oC/Ma, is estimated to occur over a narrow interval between 145oC and 170oC for the Goldwyer Sequence I samples. Generation from the Type II/III kerogen occurs from 100°C to 160°C in the Goldwyer Sequence III samples which are significantly thermally less stable than observed for the Goldwyer Sequence I samples. The kinetics results for both sequences were used in standard thermal and burial history plots to evaluate their transformation ratio and hydrocarbon generative potential. This provided a basin-specific kinetic input for burial history modelling and a better constraint for kerogen transformation and hydrocarbon generation on the Broome Platform.

<b>Citation:</b> Lukman M. Johnson, Reza Rezaee, Gregory C. Smith, Nicolaj Mahlstedt, Dianne S. Edwards, Ali Kadkhodaie, Hongyan Yu,; Kinetics of hydrocarbon generation from the marine Ordovician Goldwyer Formation, Canning Basin, Western Australia,<i> International Journal of Coal Geology</i>, Volume 232, <b>2020</b>, 103623, ISSN 0166-5162, https://doi.org/10.1016/j.coal.2020.103623.

Tags: Canning Basin, Compositional kinetics, EARTH SCIENCES, Published_External, petroleum systems modelling input
Organization: Australian Ocean Data Network
2019-20 Honours project - Identifying atmospheric processes favouring the formation of physical features in the Mount Brown South ice core

Ice cores from Mount Brown South (MBS), East Antarctica, were drilled to help understand the past atmospheric circulation variability in the southern Indian Ocean and southwest Pacific Ocean. There are visible bubble-free layers occurring frequently multiple times a year, and the origin of these features is still unknown. This project aims to determine whether the bubble-free layers in the MBS ice core can be related to atmospheric processes. 
ERA-5 data, including surface (skin) temperature, 2 metre air temperature, wind at 10 metre height, the mean surface downward short-wave radiation flux and snowfall, is used to assess the target climate variables from 1979 to 2017 at the ice core sites.

Organization: Australian Ocean Data Network
A conceptual surrogacy framework to evaluate the habitat potential of submarine canyons

The seascape of the vast Australian continental margin is characterised by numerous submarine canyons that represent an equally vast array of geomorphic and oceanographic heterogeneity. Theoretically, this heterogeneity translates into habitats that may vary equally widely in their ecological characteristics. Here we describe the methodology to develop a framework to broadly derive estimates of potential habitat condition (¿suitability¿ sensu lato) for pelagic and epibenthic megafauna (including demersal fishes), and benthic infauna in all of Australia¿s known submarine canyons.  We find that the high geomorphic and oceanographic diversity of submarine canyons creates a multitude of potential habitat types. In general, it appears that canyons may be particularly high-quality for benthic species. Canyons that incise the shelf tend to score higher in habitat potential than those confined to the slope. Canyons with particularly high habitat potential are located mainly off the Great Barrier Reef, the NSW coast, the eastern margin of Tasmania and Bass Strait, and on the southern margin. Many of these canyons have complex bottom topography, are likely to be productive, and have less intense sediment disturbance regimes. The framework presented here can be relevant ¿ once refined and comprehensively validated with ecological data - in a management and conservation context to identify canyons (or groups of canyons) that are likely to represent high-value habitat along a vast continental margin where marine planning decisions may require spatial prioritization decisions.

<b>Citation:</b> Zhi Huang, Thomas A. Schlacher, Scott Nichol, Alan Williams, Franziska Althaus, Rudy Kloser, A conceptual surrogacy framework to evaluate the habitat potential of submarine canyons, <i>Progress in Oceanography</i>, Volume 169, 2018, Pages 199-213, ISSN 0079-6611,
https://doi.org/10.1016/j.pocean.2017.11.007

Tags: EARTH SCIENCES, Published_External, continental margin, fauna environmental association, habitat diversity, niches, predictions, spatial planning
Organization: Australian Ocean Data Network
Yongala Light From 30 Oct 2010

'Australian National Moorings Network' (ANMN) is a facility of the Australian 'Integrated Marine Observing System' (IMOS) project. This data set was collected by the ANMN sub-facility 'National Reference Systems' (NRS).

Tags: surface_downwelling_photosynthetic_radiative_flux_in_air
Organization: Australian Ocean Data Network
Geochemical characteristics of early Carboniferous petroleum systems in Western Australia

A geochemical study was conducted to establish oil-oil correlations and evaluate potential source rocks within the latest Devonian–earliest Carboniferous succession of the onshore Canning Basin, Western Australia. Aromatic hydrocarbons, together with the routinely used saturated biomarker ratios and stable carbon isotopes, demonstrate that the recently discovered Ungani oilfield located on the southern margin of the Fitzroy Trough are similar, but not identical, to the early Carboniferous Larapintine 4 (L4) oil family present to the north of the Fitzroy Trough on the Lennard Shelf. The L4 oil family has been correlated to a lower Carboniferous (Tournaisian) source rock core sample from the Laurel Formation at Blackstone-1 although its bulk geochemical properties signify that it could generate substantially more gas than liquid hydrocarbons.


The Ungani oils can be distinguished from the L4 oils by their higher concentrations of paleorenieratane and isorenieratane, coupled with more depleted &delta;13C values for n-alkanes, pristane and phytane compared with other components. Hopane isomerisation ratios show distinct grouping of the two oil families that reflect both source and maturity variations. The oil from Wattle-1 ST1 on the Lennard Shelf also has an unusual composition, exhibiting some molecular and isotopic features similar to both the L4 and Ungani oils. Source rocks for the Ungani and Wattle-1 ST1 oils are unknown since their geochemical signature does not match that of the Tournaisian Laurel Formation or the Middle−Upper (Givetian–Frasnian) Devonian Gogo Formation which sourced the Devonian-reservoired Larapintine 3 oils at Blina and Janpam North-1. It is postulated that such potential oil-prone source rocks could occur within the Famennian–Tournaisian succession.

<b>Citation:</b> Gemma Spaak, Dianne S. Edwards, Clinton B. Foster, Andrew Murray, Neil Sherwood, Kliti Grice, Geochemical characteristics of early Carboniferous petroleum systems in Western Australia,<i> Marine and Petroleum Geology</i>, Volume 113, 2020, 104073, ISSN 0264-8172.
https://doi.org/10.1016/j.marpetgeo.2019.104073

Tags: Biomarkers, Canning Basin, Carboniferous, Devonian, EARTH SCIENCES, Published_External, Ungani oilfield, alkylbenzenes, aromatic carotenoids, oil-sourced correlation, photic zone euxinla, stable carbon isotopes
Organization: Australian Ocean Data Network