AndreaBozzo/ceres-open-data-index huggingface dataset:
Compilations of measured and calculated physicochemical property values for PCBs, PBDEs, PCDDs and PAHs

The dataset consists of compilations of measured and calculated physicochemical property values for PCBs, PBDEs, PCDDs and PAHs.  The properties included in this dataset are the octanol-water partition coefficient, melting point, vapor pressure and water solubility.  The measured property values were obtained from a critical review of the scientific literature.  The calculated values were obtained using the following applications: ACD/Percepta, ChemAxon Plugin Calculators, EPI Suite, NICEATM, Online Chemical Modeling Environment (OCHEM), OPERA, SPARC, and Toxicity Estimation Software Tool (T.E.S.T.). 

This dataset is associated with the following publication:
Stevens, C., J. Patel, M. Koopmans, J. Olmstead, S. Hilal, N. Pope, E. Weber, and K. Wolfe. Demonstration of a consensus approach for the calculation of physicochemical properties required for environmental fate assessments.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 194: 94-106, (2018).

Tags: cheminformatics, kow, melting-point, pahs, pbdes, pcbs, pcdds, physicochemical-property, predictive-models, qsar, vapor-pressure, water-solubility
Organization: U.S. Environmental Protection Agency
Data_files_Reyes_EHP_phthalates

The file contains three files in comma separated values (.csv) format. 
“Reyes_EHP_Phthalates_US_metabolites.csv” contains information about the National Health and Nutrition Examination Survey (NHANES) metabolite code names along with Tolerable Daily Intake (TDI), molecular weight of the parent phthalate, molecular weight of the metabolite, and names and abbreviations of the corresponding metabolites and phthalates. 

“Reyes_EHP_Phthalates_US_MCR.csv” contains the following information:
•	Data on the surveyed individuals from the original NHANES data files that includes
•	Identifying information for individual;
•	Demographic information used in defining the creatinine levels and in investigating sub populations based on age, gender, ethnicity;
•	Concentration of phthalate metabolites and creatinine in urine.
•	Calculated values for each individual;
•	Daily intake of each of the six phthalate;
•	Hazard Quotients associated with each phthalate’s daily intake;
•	Values of Hazard Index and the Maximum Cumulative Ratio.       

“Reyes_EHP_Phthalates_US_MCR_definitions.csv” and the definitions and units of the fields in “Reyes_EHP_Phthalates_US_MCR.csv”. 

This dataset is associated with the following publication:
Reyes, J., and P. Price. An analysis of cumulative risks based on biomonitoring data for six phthalates using the Maximum Cumulative Ratio.   ENVIRONMENT INTERNATIONAL. Elsevier B.V., Amsterdam,  NETHERLANDS, 112: 77-84, (2018).

Tags: biomonitoring, calculated-doses, cumulative-risk-assessment, hazard-indices, hazard-quotients, maximum-cumulative-ratios, phthalates, urine-concentrations
Organization: U.S. Environmental Protection Agency
Zhao et al. (2017) Chem. Geol. v. 474 p.1

The dataset provides information on chromium concentrations extracted from rock samples collected at the Garfield SF site in New Jersey (USA). The data are discussed in Zhao et al. (2017). Chemical Geology, v. 474, p. 1-8. 

This dataset is associated with the following publication:
Zhao, J., T. Al, S. Chapman, B. Parker, K. Mishkin, D. Cutt, and R. Wilkin. Determination of Cr(III) solids formed by reduction of Cr(VI) in a contaminated fractured bedrock aquifer: evidence for natural attenuation of Cr(VI).   CHEMICAL GEOLOGY. Elsevier Science Ltd, New York, NY, USA, 474: 1-8, (2017).

Tags: arsenic, chromium, groundwater, iron-sulfides, nickel, uranium
Organization: U.S. Environmental Protection Agency
Aerosol direct effects on ozone - China case study

Model output from the 2-way coupled WRF-CMAQ modeling system applied to China. This dataset is not publicly accessible because: EPA scientists helped with the model set-up and data analysis. The data was created by collaborators at Tsinghua University and is housed there. Since its not EPA generated data, the dataset is not included in ScienceHub. It can be accessed through the following means: The data can be accessed by contacting the corresponding author Prof. Shuxiao Wang (email: shxwang@tsinghua.edu.cn; phone: +86-10-62771466; fax: +86-10-62773650). Format: The data analyzed in this study were created by collaborators at Tsinghua University, China. The data can be accessed by contacting the corresponding author Prof. Shuxiao Wang (email: shxwang@tsinghua.edu.cn; phone: +86-10-62771466; fax: +86-10-62773650). 

This dataset is associated with the following publication:
Xing, J., J. Wang, R. Mathur, S. Wang, G. Sarwar, J. Pleim, C. Hogrefe, Y. Zhang, J. Jiang, D. Wong, and J. Hao. Impacts of aerosol direct effects on tropospheric ozone through changes in atmospheric dynamics and photolysis rates.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 17: 9869-9883, (2017).

Tags: aerosol-direct-radiative-effects, air-pollution, cmaq
Organization: U.S. Environmental Protection Agency
Emissions from Prescribed Burning of Agricultural Fields in the Pacific Northwest

PM2.5, volatile organic compounds (VOCs), polycyclic aromatic hydrocarbons (PAHs), and polychlorinated dibenzodioxins/dibenzofurans (PCDDs/PCDFs), and continuous measurements of black carbon (BC), particle mass by size, CO, CO2, CH4, and aerosol characteristics. 

This dataset is associated with the following publication:
Holder, A., B. Gullett, S. Urbanski, R. Elleman, S. O'Neil, D. Tabor, B. Mitchell, and K. Baker. Emissions from Prescribed Burning of Agricultural Fields in the Pacific Northwest.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 166: 22-33, (2017).

Tags: agricultural-burning, bluegrass, emission-factors, organics, particulate-matter, wheat
Organization: U.S. Environmental Protection Agency
Ecohydrological Index, Native Fish, and Climate Trends and Relationships in the Kansas River Basin_dataset

The dataset is an excel file that contain data for the figures in the manuscript. 

This dataset is associated with the following publication:
Sinnathamby, S., K. Douglas-Mankin, M. Muche, S. Hutchison, and A. Anandhi. Ecohydrological index, native fish, and climate trends and relationships in the Kansas River basin.   ECOHYDROLOGY. Wiley Interscience, Malden, MA, USA, 11(1): e1909, (2018).

Tags: common-shiner, ecohydrology, hydrologic-change-impacts, hydrologic-indices, plains-minnow, trend-analysis
Organization: U.S. Environmental Protection Agency
Carbonate chemistry, water quality, coral measurements

Carbonate chemistry parameters (pH, total alkalinity, and pCO2), water quality parameters (Temperature, salinity, Ca, Mg, PO4, NH3 and NO3)  as well as all coral measurements (buoyant weight, tissue surface area, surface area density, calcification rate, tissue growth rate, and percent change in surface area density) taken over the three month exposure. 

This dataset is associated with the following publication:
Enzor, L., C. Hankins, D. Vivian, W. Fisher, and M. Barron. Calcification continues in Caribbean reef-building corals at high pCO2 levels in a recirculating ocean acidification exposure system.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY. Elsevier Science Ltd, New York, NY, USA, 499: 9-16, (2018).

Tags: calcification, caribbean-coral, elevated-pco2, ocean-acidification, recirculating-system
Organization: U.S. Environmental Protection Agency
Snohomish Estuary nutrient enhanced coastal acidification pH time series and grab samples

High-resolution (15-minute frequency) monitoring of pH, dissolved oxygen, salinity, temperature, depth, and chlorophyll was conducted from July 15-October 1, 2015 in a shallow, subtidal seagrass bed in Puget Sound, WA, USA.  Grab samples for instrument validation and carbonate chemistry analysis were periodically taken next to the in-situ instrumentation. 

This dataset is associated with the following publication:
Pacella, S., C. Brown, G. Waldbusser, R. Labiosa, and B. Hales. Seagrass habitat metabolism increases short-term extremes and long-term offset of CO2 under future ocean acidification.   PNAS  (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES). National Academy of Sciences, WASHINGTON, DC, USA, 115(15): 3870-3875, (2018).

Tags: carbonate-chemistry, coastal-acidification, ocean-acidification, seagrasses
Organization: U.S. Environmental Protection Agency
Metal concentrations from permeable pavement parking lot in Edison, NJ

The U.S. Environmental Protection Agency constructed a 4000-m2 parking lot in Edison, New Jersey in 2009. The parking lot is surfaced with three permeable pavements [permeable interlocking concrete pavers (PICP), pervious concrete (PC), and porous asphalt (PA)]. Samples of each permeable pavement infiltrate, surface runoff from traditional asphalt (CC), and rainwater (RW) were analyzed in duplicate for 22 metals (including Al, As, Ba, Be, Ca, Cd, Cu, Fe, K, Li, Mg, Mn, Na, Ni, Pb, Sb, Si, Sn, Sr, V, and Zn) in both total and dissolved phases for 6 years (Jan. 2010 - Oct. 2015). 

This dataset is associated with the following publication:
Liu, J., and M. Borst. Performances of Metal Concentrations from Three Permeable Pavement Infiltrates.   WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 136: 41-53, (2018).

Tags: censored-data, metal-concentration, permeable-pavement, stormwater
Organization: U.S. Environmental Protection Agency
Southeast Atmosphere Studies: learning from model-observation syntheses

Observed and modeled data shown in figure 2b-c. 

This dataset is associated with the following publication:
Mao, J., A. Carlton, R. Cohen, W. Brune, S. Brown, G. Wolfe, J. Jimenez, H. Pye, N.L. Ng, L. Xu, V.F. McNeill, K. Tsigaridis, B. McDonald, C. Warneke, A. Guenther, M. Alvarado, J. de Gouw, L. Mickley, E. Liebensperger, R. Mathur, C. Nolte, R. Portmann, N. Unger, M. Tosca, and L. Horowitz. Southeast Atmosphere Studies: learning from model-observation syntheses.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 18: 2615-2651, (2018).

Tags: aerosol, cmaq, ozone, sas, soa, soas, southeastern-usa
Organization: U.S. Environmental Protection Agency
The reduction of summer sulfate and switch from summer to winter PM2.5 concentration maxima in the U.S.

These four files each contain 24-hour PM2.5 concentrations collected between 2000-2015. 

This dataset is associated with the following publication:
Chan, E., B. Gantt, and S. McDow. The reduction of summer sulfate and switch from summertime to wintertime PM2.5 concentration maxima in the United States.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 175: 25-32, (2017).

Tags: air-quality, fine-particulate-matter, nitrate, organic-carbon, pm2-5, sulfate
Organization: U.S. Environmental Protection Agency
Mutagenicity of Simulated Atmospheres

The data are the number of colonies per Petri plate for all the experiments.  The colonies are mutants and are also called revertants (rev)--because the Salmonella mutagenicity assay is a "reverse mutation" assay.  The data show the number of colonies (rev) per Petri plate for each experiment for each hour of exposure (1, 2, 4, 8, or 16 hours). 

This dataset is associated with the following publication:
Zavala-Mendez, J., J. Krug, S. Warren, T. Krantz, C. King, J. Mckee, S. Gavett, M. Lewandowski, W. Lonneman, T. Kleindienst, M. Meier, M. Higuchi, M.I. Gilmour, and D. DeMarini. Evaluation of an Air Quality Health Index for Predicting the Mutagenicity of Simulated Atmospheres.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 52(5): 3045–3053, (2018).

Tags: air-pollution, mutagenicity, mutation-spectra, ozone, pm, salmonella, smog
Organization: U.S. Environmental Protection Agency
sample data Red River_2011-2013

OK Fish Kill data from Red River 2011-2013. 

This dataset is associated with the following publication:
Jones-Lepp, T., V. Taguchi, W. Sovocool, D. Betowski, P. DeArmond, B. Schumacher, W. Winnik, R. McMillin, and C. Armstrong. Novel contaminants identified in fish kills in the Red River watershed, 2011–2013.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 37(2): 336-344, (2017).

Tags: fish-kills, mass-spectrometry, non-target-analysis
Organization: U.S. Environmental Protection Agency
Seahorse Manuscript Data Set

Metadata for figures presented in manuscript reporting bioenergetic effects of exposure to environmentally relevant organic compound in human airway epithelial cells. 

This dataset is associated with the following publication:
Lavrich, K., E. Corteselli, P. Wages, P. Bromberg, S. Simmons, E. Gibbs-Flournoy, and J. Samet. Investigating Mitochondrial Dysfunction in Human Lung Cells Exposed to Redox-Active PM Components.   TOXICOLOGY AND APPLIED PHARMACOLOGY. Academic Press Incorporated, Orlando, FL, USA, 342: 99-107, (2018).

Tags: airway-epithelial-cells, extracelular-flux-analyses, mitochondria, quinones
Organization: U.S. Environmental Protection Agency
Estimating environmental co-benefits of U.S. low-carbon pathways using the GCAM-USA integrated assessment model

There are many technological pathways that can lead to reduced carbon dioxide (CO2) emissions.  However, these pathways can have substantially different impacts on other environmental endpoints, such as air quality and energy-related water demand. This study uses an integrated assessment model with state-level resolution of the U.S. energy system to compare environmental impacts of alternative low-carbon pathways. One set of pathways emphasizes nuclear energy and carbon capture and storage (NUC/CCS), while another set emphasizes renewable energy (RE). These are compared with pathways in which all technologies are available. Air pollutant emissions, mortality costs attributable to particulate matter less than 2.5 microns in diameter (PM2.5), and energy-related water demands are evaluated for 50% and 80% CO2 reduction targets in the U.S. in 2050. The RE low-carbon pathways require less water withdrawal and consumption than the NUC/CCS pathways because of the large cooling demands of nuclear power and CCS. However, the NUC/CCS low-carbon pathways produce greater health benefits, mainly because the NUC/CCS assumptions result in less primary PM2.5 emissions from residential wood combustion. Environmental co-benefits differ among states because of factors such as existing technology stock, resource availability, and environmental and energy policies. An important finding is that biomass in the building sector can offset some of the health co-benefits of the low-carbon pathways even though it plays only a minor role in reducing CO2 emissions. 
This dataset consists of source code, input data, and processed outputs for Ou et al. (2018), published in Applied Energy. 

This dataset is associated with the following publication:
Ou, Y., W. Shi, S.J. Smith, C.M. Ledna, J.J. West, C. Nolte, and D. Loughlin. Estimating environmental co-benefits of U.S. low-carbon pathways using an integrated assessment model with state-level resolution.   Applied Energy. Elsevier B.V., Amsterdam,  NETHERLANDS, 216: 482-493, (2018).

Tags: air-quality, emissions, gcam-usa, integrated-assessment-modeling
Organization: U.S. Environmental Protection Agency
QCL N2O data final MayAugust2016

The dataset consists of daily measurements of N2O, N2O isotopic abundance and site preference, and CO2 flux. Data are presented as a daily averages of 10 second data, obtained over a 46 day period. 

This dataset is associated with the following publication:
Yuan, Y., H. Chen, W. Yuan, D. Williams, J. Walker, and w. Shi. Is biochar-manure co-compost a better solution for soil health improvement and N2O emissions mitigation?.   BIOGEOCHEMISTRY. Springer, New York, NY, USA, 113: 14-25, (2017).

Tags: biochar, isotopomer, nitrous-oxide, quantum-cascade-laser
Organization: U.S. Environmental Protection Agency
Estimating Intermittent Individual Spawning Behavior via Disaggregating Group Data

In order to understand fish biology and reproduction it is important to know the fecundity patterns of individual fish, as frequently established by recording the output of mixed-sex groups of fish in a laboratory setting. However, for understanding individual reproductive health and modeling purposes it is important to estimate individual fecundity from group fecundity. A multi-stage method was developed that disaggregates group level data into estimates for individual-level clutch size and spawning interval distributions. The disaggregation technique was verified by combining data from fathead minnow pairs, and checking that the disaggregation method reproduced the original clutch sizes and spawning intervals. 

This dataset is associated with the following publication:
Nishimura, J., R. Smith, K. Jensen, G. Ankley, and K. Watanabe. Estimating intermittent individual spawning behavior via disaggregating group data.   BULLETIN OF MATHEMATICAL BIOLOGY. Elsevier Science Ltd, New York, NY, USA, 80(3): 687-700, (2018).

Tags: deconvolution, disaggregation, endocrine-disruption, fathead-minnow, fish, inverse-problems, maximum-likelihood, mode-of-action-moa, reproduction
Organization: U.S. Environmental Protection Agency
Regional Marginal Abatement Cost Curves for NOx

Data underlying the figures included in the manuscript "Marginal abatement cost curve for NOx incorporating controls, renewable electricity, energy efficiency and fuel switching". Data include national and regional Marginal Abatement Cost Curves. 

This dataset is associated with the following publication:
Loughlin, D., A. Macpherson, K. Kaufman, and B. Keaveny. Marginal abatement cost curve for NOx incorporating controls, renewable electricity,  energy efficiency and fuel switching.   JOURNAL OF THE AIR & WASTE MANAGEMENT ASSOCIATION. Air & Waste Management Association, Pittsburgh, PA, USA, 67(10): 1115-1125, (2017).

Tags: air-quality, climate-change, coal, electricity-generation, emission-projections, energy-efficiency, energy-systems-modeling, fuel-switching, macc, markal, natural-gas, nested-sensitivity-analysis, nox, renewable-electricity, scenario-analysis
Organization: U.S. Environmental Protection Agency
Radford McAlester flight paths

Heights and position of UAS from starting point. 

This dataset is associated with the following publication:
Aurell, J., B. Mitchell, V. Chirayath, J. Jonsson, D. Tabor, and B. Gullett. Field determination of multipollutant, open area combustion source emission factors with a hexacopter unmanned aerial vehicle.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 166(11): 433-440, (2017).

Tags: combustion, emissions, hexacopter, plume, sampler, sensor, unmanned-aerials-system
Organization: U.S. Environmental Protection Agency
Buse_Francisella and free-living amoebae data sets

Co-infection data in the form of colony forming units and amoeba cell counts. 

This dataset is associated with the following publication:
Buse , H., F. Schaefer, and G. Rice. Enhanced survival but not amplification of Francisella spp. in the presence of free-living amoebae.   Acta Microbiologica et Immunologica Hungarica. Akademiai Kiado, Budapest,  HUNGARY, 64(1): 17-36, (2016).

Tags: acanthamoeba, amoeba, co-cultures, endosymbiont, environmental-persistence, francisella, host, legionella, parasite, vermamoeba
Organization: U.S. Environmental Protection Agency
MARGA_Chen et al_2016

These data describe the chromatography characteristics of the MARGA instrument software as compared to an alternative, independent technique for chromatogram processing, including an assessment of accuracy, precision and method detection limit. 

This dataset is associated with the following publication:
Chen, X., J. Walker, and C. Geron. Chromatography related performance of the Monitor for Aerosols and Gases in Ambient Air (MARGA): laboratory and field based evaluation.   Atmospheric Measurement Techniques. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 10(3893): 3908, (2017).

Tags: bidirectional-flux, deposition, inorganic-pm, marga, micrometeorology, nitrogen, online-ion-chromatography, sulfur
Organization: U.S. Environmental Protection Agency
Table 1:  Biofuels simulation scenarios

A spreadsheet containing information used to generate Table 1.  Agricultural Market sector results presented in the spreadsheet were generated elsewhere (non-EPA) and have been published previously.  Their generation is not part of this Science Hub project.  Documentation and Metadata supporting these data are provided in the Table 1 file and in the link provided in the supporting documents section. 

This dataset is associated with the following publication:
Cooter, E., R. Dodder, J. Bash, A. Elobeid, L. Ran, V. Benson, and D. Yuan. Exploring a United States Maize Cellulose Biofuel Scenario Using an Integrated Energy and Agricultural Markets Solution Approach.   Annals of Agricultural & Crop Sciences. Austin Publishing Group, Jersey City, NJ, USA, 2(2): 1031, (2017).

Tags: air-quality, cmaq, epic, hypoxia, integrated-multimedia-systems-modeling, land-quality, markal, mississippi-river-basin, national, northern-gulf-of-mexico, scenarios, water-quality
Organization: U.S. Environmental Protection Agency
Figure 5, Biofuel refinery facility locations

This workbook contains the locations and types of current and anticipated biofuel feedstock processing facilities assumed under the simulated scenarios. 

This dataset is associated with the following publication:
Cooter, E., R. Dodder, J. Bash, A. Elobeid, L. Ran, V. Benson, and D. Yuan. Exploring a United States Maize Cellulose Biofuel Scenario Using an Integrated Energy and Agricultural Markets Solution Approach.   Annals of Agricultural & Crop Sciences. Austin Publishing Group, Jersey City, NJ, USA, 2(2): 1031, (2017).

Tags: air-quality, cmaq, epic, hypoxia, integrated-multimedia-systems-modeling, land-quality, markal, mississippi-river-basin, national, northern-gulf-of-mexico, scenarios, water-quality
Organization: U.S. Environmental Protection Agency
Data from modeling

Simulation output from CMAQ runs for Uinta Basin. 

This dataset is associated with the following publication:
Matichuk, R., G. Tonnesen, D. Luecken, R. Gilliam, S. Napelenok, K. Baker, D. Schwede, B. Murphy, D. Helmig, S. Lyman, and S. Roselle. Evaluation of the Community Multiscale Air Quality Model for Simulating Winter Ozone Formation in the Uinta Basin..   JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES. American Geophysical Union, Washington, DC, USA, 122(24): 13545-13572, (2017).

Tags: cmaq, ozone, ubwos, winter
Organization: U.S. Environmental Protection Agency
The development and implementation of a method using blue mussels (Mytilus spp.) as biosentinels of Cryptosporidium spp. and Toxoplasma gondii contamination in marine aquatic environments

Data set includes occurrence and genotypes of T. gondii and Cryptosporidium species found in central California coastlines. 

This dataset is associated with the following publication:
Staggs , S., S. Keely , M. Ware , N. Schable, M. See , D. Gregorio, X. Zou, C. Su, J.P. Dubey, and E. Villegas. The development and implementation of a method using blue mussels (Mytilus spp.) as biosentinels of Cryptosporidium spp. and Toxoplasma gondii contamination in marine aquatic environments.   Parasitology Research. Springer, New York, NY, USA, 114(12): 4655-4667, (2015).

Tags: bivalve, cryptosporidium, methods-development, mussel, surface-water, toxoplasma-gondii, water-quality
Organization: U.S. Environmental Protection Agency