AndreaBozzo/ceres-open-data-index huggingface dataset:
NCCOS spatial modeling of threatened Caribbean corals: presence-only modeling for threatened Orbicella species from the nearshore to the mesophotic from 2007-01-01 to 2018-12-31 (NCEI Accession 0241110)

This dataset is a compilation of modeled spatial distributions of Threatened corals, Orbicella annularis (lobed star coral) and Orbicella faveolata (mountainous star coral)/Orbicella franksi (boulder star coral). in the shallow and upper mesophotic waters (0 â 60 meters depth) on the eastern Puerto Rico shelf (encompassing St. Thomas and St. John, U.S. Virgin Islands and the partial waters around Culebra and Vieques, Puerto Rico). Models for O. faveolata/O. franksi were combined into one model. All three Orbicella spp. area listed as Threatened under the U.S. Endangered Species Act. The raster datasets contain predicted probability of occurrence and prediction uncertainty for O. annularis and O. faveolata/O. franksi at four different model extents:
â¢ 0 â 60 meter depth model: Orbicella spp. models encompassing the entire modeling region, both shallow and mesophotic depths from 0 to 60 meters (capped at 60 meters for Orbicella spp. known depth range in this region)
â¢ 0 â 60 meter depth south shore only model: Orbicella spp. models of the south shore only removal of the mesophotic depths of the north shore, north of St. Thomas and St. John, USVI
â¢ Shallow only model (0 â 30 meter depth): Orbicella spp. models of the shallow waters only, removal of the mesophotic depths
â¢ Mesophotic only model (30 â 60 meter depth: Models of O. faveolata/O. franksi at mesophotic depths only remove of the shallow depths

Models were conducted using a presence/background sample model, which involves the use of presence-only data. Maximum entropy modeling was used specifically, initiated through the Java software program, MaxEnt.

Tags: caribbean sea, culebra, data analyses, derived data product, developing a benthic habitat map for the insular shelf south of st. thomas and st. john, ecological and biogeographic assessments, environmental modeling, geospatial, geospatial data, marine spatial ecology, mnkxuj, model, model data, models/analyses, national coral reef monitoring program implementation: biological and socioeconomic monitoring, noaa ship nancy foster, oceanography, orbicella annularis, orbicella faveolata, orbicella franksi, probability of occurrence, puerto rico, seafloor characterization of the u.s. caribbean, spatial predictive modeling of threatened esa corals in the u.s. atlantic and caribbean, st. john, st. thomas, u.s. states and territories, u.s. virgin islands, uncertainty, us coral reef monitoring data summary 2018, vieques, waterbodies
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Carbon dioxide (CO2) gas analyzer and other instruments from MARION DUFRESNE in the Arabian Sea, Bali Sea and others from 1991-01-05 to 1993-08-08 (NCEI Accession 0157100)

This dataset includes Surface underway, chemical, meteorological and physical data collected from MARION DUFRESNE in the Arabian Sea, Bali Sea, Gulf of Aden, Gulf of Suez, Indian Ocean, Laccadive Sea, Red Sea, Savu Sea and Southern Oceans (> 60 degrees South) from 1991-01-05 to 1993-08-08. These data include BAROMETRIC PRESSURE, Partial pressure (or fugacity) of carbon dioxide - water, SALINITY and SEA SURFACE TEMPERATURE. The instruments used to collect these data include Carbon dioxide (CO2) gas analyzer.

These data were collected by Alain Poisson of Universite Pierre et Marie Curie; Laboratoire de Biogeochimie et Chimie Marines (LBCM) as part of the Minerve 07-28 dataset. CDIAC associated the following cruise ID(s) with this dataset: Minerve 07-28

Tags: atm_pre, fco2_wat, indian ocean, minerve 07-28, ocean carbon and acidification data system (ocads) project, oceanography, sss, sst, surface underway
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Soundings, bottom temperature, and other data from CS E. WILSHAW in the Coral Sea from 1974-09-01 to 1974-10-01 (NCEI Accession 7500258)

This dataset consists of the data from the 24 oceanographic stations occupied during the Cairns - Port Moresby Survey, a survey of a cable route between Australia and Papua New Guinea from September and October 1974. The survey was conducted by Cable and Wireless Ltd.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Water temperature profiles and other data from XBTs from ALIS, ANGO and other platforms in the Atlantic and Indian Oceans from 1985-02-24 to 1988-01-20 (NCEI Accession 8800178)

This dataset contains Expendable BathyThermograph (XBT) temperature profile data obtained from 278 XBTs in the Atlantic Ocean and 460 XBTs in the Indian Ocean.

Data has been processed by NODC to the NODC standard Bathythermograph (XBT) (C116) format.

The C116/C118 format contains temperature-depth profile data obtained using expendable bathythermograph (XBT) instruments. Cruise information, position, date and time were reported for each observation. The data record was comprised of pairs of temperature-depth values. Unlike the MBT Data File, in which temperature values were recorded at uniform 5 m intervals, the XBT data files contained temperature values at non-uniform depths. These depths were recorded at the minimum number of points ("inflection points") required to accurately define the temperature curve. Standard XBTs can obtain profiles to depths of either 450 or 760 m. With special instruments, measurements can be obtained to 1830 m. Prior to July 1994, XBT data were routinely processed to one of these standard types. XBT data are now processed and loaded directly in to the NODC Ocean Profile Data Base (OPDB). Historic data from these two data types were loaded into the OPDB.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Wave direction and other data from Motion Package Buoy station 24 in the North Atlantic from 1980-09-25 to 1980-12-01 (NCEI Accession 8200175)

This dataset includes wave/current observations data from FIXED PLATFORM OF CANADA in the North Atlantic Ocean from 1980-09-25 to 1980-12-01.

Data has been processed by NODC to the NODC standard Wave/Current Observations (F181) format.

The F181 format is designed to support studies made by automated ocean sensoring devices. The format consists of ten record types. Record types A and B describe the basic environmental information to understand the data. Record types C, D, E, F, G, H, I, and J are used to report current meter, water level, pressure gauge, wave height, and wave direction, spectra, fourier coefficients, and current meter respectively.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
WIND DIRECTION, pH and other data from OGON, AISBERG and other platforms from 1973-02-15 to 1977-05-07 (NCEI Accession 7800585)

Water depth and other data from the AISBERG and other platforms from 15 February 1973 to 07 May 1977. Data were collected by Pacific Research Institute of Fisheries and Oceanography and other institutions as part of the International Decade of Ocean Exploration / International Ocean Studies / First Dynamic Response and Kinematics Experiment in the Drake Passage (IDOE/ISOS/FDRAKE) and other projects.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bathythermograph (XBT aircraft) data from AIRCRAFT in the Philippine Sea from 1971-11-08 to 1971-11-30 (NCEI Accession 7300706)

This dataset includes bathythermograph (XBT aircraft) data from AIRCRAFT in the Philippine Sea from 1971-11-08 to 1971-11-30.

Data has been processed by NODC to the NODC standard Bathythermograph (XBT Aircraft) (C118) format.

The C116/C118 format contains temperature-depth profile data obtained using expendable bathythermograph (XBT) instruments. Cruise information, position, date and time were reported for each observation. The data record was comprised of pairs of temperature-depth values. Unlike the MBT Data File, in which temperature values were recorded at uniform 5 m intervals, the XBT data files contained temperature values at non-uniform depths. These depths were recorded at the minimum number of points ("inflection points") required to accurately define the temperature curve. Standard XBTs can obtain profiles to depths of either 450 or 760 m. With special instruments, measurements can be obtained to 1830 m. Prior to July 1994, XBT data were routinely processed to one of these standard types. XBT data are now processed and loaded directly in to the NODC Ocean Profile Data Base (OPDB). Historic data from these two data types were loaded into the OPDB.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bathythermograph (MBT) data from J. R. PERRY in the North Atlantic Ocean from 1962-11-04 to 1962-11-24 (NCEI Accession 6200694)

This dataset includes bathythermograph (MBT) data from J. R. PERRY in the North Atlantic Ocean from 1962-11-04 to 1962-11-24.

Data has been processed by NODC to the NODC standard Bathythermograph (MBT) (C128) format.

The C128 format is used for temperature-depth profile data obtained using the mechanical bathythermograph (MBT) instrument. The maximum depth of MBT observations is approximately 285 m. Therefore, MBT data are useful only in studying the thermal structure of the upper layers of the ocean. Cruise information, date, position, and time are reported for each observation. The data record comprises pairs of temperature-depth values. Temperature data in this file are recorded at uniform 5 m depth intervals.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Coral reef ecosystem valuation surveys in Puerto Rico conducted from 2016-10-15 to 2017-06-21 (NCEI Accession 0173405)

This dataset contains the data that were collected as part of a six volume report series on the socioeconomics of visitor use of Puerto Ricoâs coral reef ecosystems. Two main surveys were conducted for reef-using visitors to Puerto Rico: the Airport Survey and the CUSTOMER On-site Survey.

The first component of the Airport Survey consisted of an on-site survey at the airport on flights leaving Puerto Rico.  Information was obtained on place of permanent residence, time of arrival and departure for each participant's current trip to Puerto Rico, number of nights in Puerto Rico on trip, number in the party 16 years and older, and number in party under 16 years of age. Demographic information (e.g., age, gender, race/ethnicity, household income and ownership of second home in Puerto Rico) was also part of this survey. In addition, the survey included questions about recreation activity by type of activity, mode of access (shore, private boat, rental boat or for hire boat), region of activity (five regions), and number in the party that did the activity). Number of trips to Puerto Rico and number of day spent in Puerto Rico over the last 12 month was also asked. The Airport survey was done in the winter and summer seasons).

The airport survey also had a mailback component. This consisted of two surveys handed to reef-using visitors after completing the On-site Airport survey; an expenditures and satisfaction mailback.  Detailed expenditures were obtained and the number in the party the expenditures covered. The satisfaction mailback obtained ratings on 25 natural resource attributes, facilities and services on both importance and satisfaction with each item.  Special issue questions were also included here.

The CUSTOMER On-site survey was done at hotels, marinas, dive shops, charter/guide boat access points, parks and beaches where reef-using visitors could be found.  This survey obtained activity participation and use as in the Airport On-site survey, but added the dimension of intensity of use measured in person-days and number of dives for snorkeling and SCUBA diving.  Again this was done by region and season.  this survey also included the willingness to pay questions for the non-market economic values of reef attribute conditions. The survey also included demographic information much like the Airport Survey.

Tags: atlantic ocean, biosphere, caribbean sea /north atlantic ocean, corals, country/territory, earth science, geographic information, ocean basin, oceanography, puerto rico, puerto rico (18n066w0000), questionnaire, reef monitoring and assessment, socio-economic survey, socioeconomic, united states of america, zoology
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Cetacean visual observations, samples and environmental parameters collected onboard the NOAA Ship Gordon Gunter (GU) in the Gulf of America (formerly U.S. Gulf of Mexico) from 2009-06-13 to 2009-08-12 (survey GU0903) (NCEI Accession 0304467)

The Southeast Fisheries Science Center (SEFSC) conducted a shipboard survey in the Gulf of America (formerly U.S. waters of the Gulf of Mexico) from approximately the 200m isobath out to the U.S. Exclusive Economic Zone (EEZ) from Key West, FL to the U.S.-Mexico border. The survey was conducted between June 10, 2009 and August 13, 2009 onboard the NOAA Ship Gordon Gunter. A visual line-transect and passive acoustic survey was conducted to estimate the abundance and spatial distribution of marine mammals in U.S. oceanic waters. A second objective of the survey was to conduct a pilot study to characterize sperm whale prey using fisheries acoustics equipment and a mid-water trawl.

This dataset includes marine mammal visual observation data and effort points with surveying conditions that can be used in abundance and density modeling per visual line-transect survey protocols. This dataset also includes opportunistic marine mammal photographs and non-marine mammal sightings such as sea turtles. Trawl catch data and associated photographs are also provided. Environmental data collected via Conductivity, Temperature, Depth (CTD) sensor and expendable bathythermographs (XBT) are also included.

Tags: 7mln7a, atmospheric/ocean indicators, baleen whales, big eye binoculars, biological sampling, biopsy, camera, cetacean, ctd, distance sampling, doc/noaa/nmfs/sefsc, dolphins, endangered species, gulf of america, indicator species, line transect sampling, marnine mammal, midwater trawls, oceanography, photograph, population abundance, ships, sighting, species abundance, species distribution models, species/population interactions, toothed whales, united states of america, visual observation, xbt
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Surface underway measurements of partial pressure of carbon dioxide (pCO2), sea surface temperature, sea surface salinity and barometric pressure during R/V Laurence M. Gould Expeditions in the South Pacific Ocean, South Atlantic Ocean, Southern Ocean, Drake Passage from 2017-12-31 to 2018-12-19 (NCEI Accession 0187070)

This dataset includes surface underway data collected from R/V Laurence M. Gould in the South Pacific Ocean, South Atlantic Ocean, Southern Ocean, Drake Passage from 2017-12-31 to 2018-12-19. These data include barometric pressure, partial pressure of carbon dioxide (pCO2) - water, sea surface salinity, sea surface temperature and barometric pressure. The instruments used to collect these data include Carbon dioxide (CO2) gas analyzer and shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement.

Tags: 33lg20171231, 33lg20180216, 33lg20180325, 33lg20180413, 33lg20180510, 33lg20181003, 33lg20181022, 33lg20181108, 33lg20181206, drake passage, eq_pre, eq_tmp, gould_2018, lmg1801, lmg1802, lmg1803, lmg1804, lmg1805, lmg1808, lmg1809, lmg1810, lmg1811, lmg_2018, ocean carbon and acidification data system (ocads) project, oceanography, pco2_wat_eq, pco2_wat_sst, soop, south atlantic ocean, south pacific ocean, southern ocean, sss, sst, surface underway, vos
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA RESTORE Science Program: ecosystem modeling to improve fisheries management in the Gulf of Mexico: model inputs and outputs for the US Gulf-wide model, 1980-01-01 to 2016-12-31 (NCEI Accession 0243116)

This dataset is a collection of files containing the necessary inputs to, and relevant outputs from, the U.S. Gulf-wide ecosystem model, developed using the Ecopath with Ecosim (EwE) modeling software package. The spatial extent of the model is 25Â°-30.5Â° N and -81Â° to -97.3Â° W and hindcast simulations were run in Ecosim from 1980 (the Ecopath snapshot year) to 2016 at a monthly timestep. Input parameters for Ecopath include biomass, consumption, mortality, diet, landings, and discards for 78 functional groups included in the model. Each input or output parameter type is included as its own csv file with informative names.

Tags: 0lwcp8, data analyses, ecosystem modeling to improve fisheries management in the gulf of mexico, environmental modeling, gulf of mexico, model, models/analyses, nccos sponsored research, oceanography, restore project, restore science program, waterbodies
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Dissolved inorganic carbon (DIC), total alkalinity, water temperature, salinity, nutrients and other variables collected from discrete samples and profile observations during the R/V Celtic Voyager research cruise (EXPOCODE 45CV20190109) in the North Atlantic Ocean, Irish Sea and St. Georges Channel from 2019-01-10 to 2019-01-19 (NCEI Accession 0281869)

This dataset includes discrete profile measurements of dissolved inorganic carbon, total alkalinity, water temperature, salinity, nutrients and other variables collected from discrete samples and profile observations during the R/V Celtic Voyager research cruise (EXPOCODE 45CV20190109) in the North Atlantic Ocean, Irish Sea and St. Georges Channel from 2019-01-10 to 2019-01-19. Hydrographic measurements along this section were made under the direction of the GO-SHIP.

Tags: 45cv20190109, alkali, ctdsal, ctdtmp, discrete measurement, irish sea and st. georges channel, nitrit, no2no3, north atlantic ocean, ocean carbon and acidification data system (ocads) project, oceanography, phspht, profile, r/v celtic voyager, salnty, silcat, tcarbn
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Physical, chemical, geological, and biological data collected by U.S. Geological Survey from moorings in the North Atlantic Ocean, North Pacific Ocean, and Mediterranean Sea from 1975-05-08 to 2015-07-14 (NCEI Accession 0156446)

Time series datasets collected by the USGS Coastal and Marine Geology Program from 1975 to the present. The data were collected to address specific research questions and were primarily collected over durations less than a year, using stationary platforms, with sensors near the sea floor. Some of the measurements span the vertical extent of the water column, but others are limited to the area less than 5 meters above the sea floor. These data have been used to study of ocean dynamics and to validate coastal ocean models.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Water temperature, salinity, and other data from CTD taken from the research vessel Xue Long, cruise Chinare29, collected in the Prydz Bay, Antarctica from 2013-01-31 to 2013-03-03 (NCEI Accession 0173470)

Primary ocean station data (pressure, temperature, salinity) collected in the Prydz Bay region during the 29th Chinese National Antarctic Research Expedition Chinare29 cruise taken from the Chinese icebreaker R/V Xue Long during 31 January â 3 March, 2013. These austral summer observations were taken across the shelf to the continental slope, to depths up to 3500m, and along the ice-shelf. Data file format is plain text.

Tags: 5e91xe, antarctica, oceanography, u.s./chinese collaborative study: investigation of bottom water formation in prydz bay
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Dissolved inorganic carbon, alkalinity, temperature, salinity and SEA SURFACE TEMPERATURE collected from discrete sample and profile observations using CTD, bottle and other instruments from L'ASTROLABE in the Indian Ocean, South Pacific Ocean and others from 2002-10-16 to 2012-03-06 (NCEI Accession 0157351)

This dataset includes chemical, discrete sample, physical and profile data collected from L'ASTROLABE in the Indian Ocean, South Pacific Ocean, Southern Oceans (> 60 degrees South) and Tasman Sea from 2002-10-16 to 2012-03-06. These data include DISSOLVED INORGANIC CARBON (DIC), SALINITY, SEA SURFACE TEMPERATURE, TOTAL ALKALINITY (TA) and WATER TEMPERATURE. The instruments used to collect these data include CTD and bottle.

These data were collected by Catherine Goyet of University of Perpignan Via Domita (UPVD) as part of the VOS_MINERVE_2002_2012 dataset. CDIAC associated the following cruise ID(s) with this dataset: MINERVE

Tags: 353l20021016, alkali, dic, discrete measurement, minerve, ocean carbon and acidification data system (ocads) project, oceanography, profile, southern ocean, sss, sst, ta, tcarbn
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Experimental evaluation of nutrient and disease treatment effects on Acropora cervicornis (NCEI Accession 0299892)

Acropora cervicornis fragments of each genotype were evenly and haphazardly assigned to two nutrient treatments: ambient nutrients (Ambient) or elevated ammonium (NH4).  Each nutrient treatment was replicated in four independent tanks (n = 3 fragments per genotype per tank). For ~1.5 months (47 d), Ambient tanks were maintained under nutrient levels consistent with the values in Virginia Key, FL, while elevated NH4 tanks were dosed with NH4Cl [3 mM] every 15 minutes using peristaltic pumps. The initial NH4 dose volume was 10 mL of the stock solution, targeting a ~10 Î¼M increase in NH4 concentration. These values were calculated to account for the dilution of the nutrients resulting from adding new ambient seawater to the tanks (200 mL/min in a total tank volume of 180 L). After detecting higher than normal NH4 concentrations in the incoming seawater from Biscayne Bay, the NH4 dose volume was lowered to 5 mL of the stock solution, targeting ~5 Î¼M NH4 increase above ambient values. The fragments were also assigned to disease vs. placebo treatments, the disease treatments involving exposure to homogenates of corals showing signs of white band disease following the protocol found in Rosales & Palacio-Castro (2024).

Water samples (~40 mL) were collected to monitor NH4 levels in the treatments and immediately refrigerated at 4C. The elevated NH4 tanks were sampled daily, but the Ambient tanks were sampled less frequently (~2-3 days and no samples were collected during weeks 1 and 3 of the experiment). Nutrient concentrations were measured at NOAA-AOML using an AA3 nutrient analyzer (Seal Analytical, Southampton, UK). The instrument was calibrated before each run using standard solutions and procedures. Initially, only NH4 was monitored, but after high NH4 concentrations in the source seawater were detected, additional measurements of PO4 were included.

Tags: 1b909d, 31250, atlantic ocean, biology, biosphere, chemistry, coral diseases, coral mortality, corals, country/territory, dissolved solids, earth science, esa listed species, experimental evaluation of nutrient effects on coral mesocosms, florida, florida reef tract (26n080w0007), gulf of mexico, nh4, nitrate, nitrite, nitrogen, north atlantic ocean, numeric data sets, nutrient analyzer, nutrients, ocean basin, ocean chemistry, oceanography, oceans, phosphate, silicate, south florida, survivorship, united states of america, white-band disease, zoology
Organization: National Oceanic and Atmospheric Administration, Department of Commerce