AndreaBozzo/ceres-open-data-index huggingface dataset:
Louisiana breeding bird survey data

The data are maintained by the USGS (https://www.pwrc.usgs.gov/bbs/RawData/) and provide information on the trends and status of North American bird populations reported as population abundance indices.  This research effort analyzed Louisiana breeding bird survey data (total species and total population) for 1990 and 2014. This dataset is not publicly accessible because: It is secondary data maintained by USGS. It can be accessed through the following means: https://www.pwrc.usgs.gov/bbs/RawData/. Format: Electronic text files. 

This dataset is associated with the following publication:
Eason, T., W. Chuang, S. Sundstrom, and H. Cabezas. An information theory-based approach to assessing spatial patterns in complex systems.   Entropy. MDPI AG, Basel,  SWITZERLAND, 21(2): 182, (2019).

Tags: breeding-bird-survey, community-structure, complex-systems, environmental-change, governance, law-and-policy, leading-indicators, louisiana, north-america, resilience, usgs
Organization: U.S. Environmental Protection Agency
Dataset for non-targeted urinary biomarkers

This dataset contains a summary of compounds found in human urine samples. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: The original dataset contains identification information for the sample subjects and all of their descriptors including age, gender, race, and medical screening information.   The analyzed data cannot be made publicly available. Format: This dataset contains a summary of compounds found in human urine samples. 

This dataset is associated with the following publication:
O’Lenick, C., J. Pleil, M. Stiegel, J. Sobus, and A. Wallace. Detection and analysis of endogenous polar volatile organic compounds (PVOCs) in urine for human exposome research.   BIOMARKERS. Taylor & Francis, Inc., Philadelphia, PA, USA, 24(3): 240-248, (2019).

Tags: adverse-outcome-pathways, biomarkers, gas-chromatography, human-exposome, mass-spectroscopy, non-targeted-analysis, urinary-metabolites
Organization: U.S. Environmental Protection Agency
Dataset for Targeted GC-MS Analysis of Firefighters' Exhaled Breath

This dataset includes a table of the VOC concentrations detected in firefighter breath samples. QQ-plots for benzene, toluene, and ethylbenzene levels in breath samples as well as box-and-whisker plots of pre-, post-, and 1 h post-exposure breath levels of VOCs for firefighters participating in attack, search, and outside ventilation positions are provided. Graphs detailing the responses of individuals to pre-, post-, and 1 h post-exposure concentrations of benzene, toluene, and ethylbenzene are shown. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: The original dataset contains identification information for the firefighters who participated in the controlled structure burns. The analyzed tables and graphs can be made publicly available. Format: The original dataset contains identification information for the firefighters who participated in the controlled structure burns. The analyzed tables and graphs can be made publicly available. 

This dataset is associated with the following publication:
Wallace, A., J. Pleil, K. Oliver, D. Whitaker, S. Mentese, K. Fent, and G. Horn. Targeted GC-MS analysis of firefighters’ exhaled breath: Exploring biomarker response at the individual level.   JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL HYGIENE. Taylor & Francis, Inc., Philadelphia, PA, USA, 16(5): 355-366, (2019).

Tags: biomarkers, firefighters, gas-chromatography-mass-spectrometry-gc-ms, occupational-exposure, thermal-desorption-td, volatile-organic-compounds-vocs
Organization: U.S. Environmental Protection Agency
Chemistry of restored urban streams in Washington DC

Field and lab data associated with an assessment of regenerative stormwater conveyance systems as a type of stream restoration intended to reduce nutrients in urban streams.  Includes data on nitrogen, phosphorus, carbon, metals, dissolved oxygen, pH, and fluorescence data. 

This dataset is associated with the following publication:
Duan, S., P. Mayer, S. Kaushal, B. Wessel, and T. Johnson. Regenerative Stormwater Conveyance (RSC) for reducing nutrients in urban stormwater runoff depends upon carbon quantity and quality.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 652: 134-146, (2019).

Tags: dissolved-oxygen, nitrogen, organic-matter, phosphorus, regenerative-stormwater-conveyance
Organization: U.S. Environmental Protection Agency
Science Hub Dataset for MS2 Paper

Recovery and decontamination data from bench- and operational-scale testing designed to evaluate virucidal chemical efficacy. 

This dataset is associated with the following publication:
Wyrzykowska-Ceradini, B., W. Calfee, A. Touati, J. Wood, L. Mickelsen, L. Miller, M. Colby, C. Slone, N. Griffin-Gatchalian, S. Gayatri Pongur, and D. Aslett. The Use of Bacteriophage MS2 for Development and Application of a Virucide Decontamination Test Method for Porous and Heavily Soiled Surfaces.   JOURNAL OF APPLIED MICROBIOLOGY. Blackwell Publishing, Malden, MA, USA,  1-31, (2019).

Tags: agricultural-surfaces, bacteriophage-ms2, citric-acid, fmdv-surrogate, ph-amended-bleach, surface-decontamination, synthetic-agricultural-grime
Organization: U.S. Environmental Protection Agency
The Role of Fuel Type and Combustion Phase on the Toxicity of Biomass Smoke Following Inhalation Exposure in Mice

This dataset includes physico-chemical characteristics of biomass smoke of three different fuels (oak, peat, and eucalyptus) generated from a tube furnace system at two different combustion phases (smoldering and flaming) and also provides comparisons of lung toxicity outcomes after inhalation and aspiration exposures to the biomass smoke. 

This dataset is associated with the following publication:
Kim, Y.H., C. King, Q. Krantz, M.M. Hargrove, I. George, J. McGee, L. Copeland, M. Hays, M. Landis, M. Higuchi, S. Gavett, and M. Gilmour. The role of fuel type and combustion phase on the toxicity of biomass smoke following inhalation exposure in mice.   Archives of Toxicology. Springer, New York, NY, USA, 93(6): 1501-1513, (2019).

Tags: biomass-combustion, biomass-smoke, inhalation-dosimetry-model, inhalation-exposure, inhalation-exposures, instillation-exposure, lung-toxicity, particulate-matter, wildland-fire
Organization: U.S. Environmental Protection Agency
Honda_Wambaugh_Using the concordance of in vitro and in vivo data to evaluate extrapolation assumptions

All relevant data are within the manuscript, its Supporting Information files, and the httk R software package v1.9.2. 

This dataset is associated with the following publication:
Honda, G., R. Pearce, L. Pham, R. Setzer, B. Wetmore, N. Sipes, J. Gilbert, B. Franz, R. Thomas, and J. Wambaugh. Using the Concordance of In Vitro and In Vivo Data to Evaluate Extrapolation Assumptions.   PLoS ONE. Public Library of Science, San Francisco, CA, USA, 14(5): 1-33, (2019).

Tags: environmental-chemicals, expocast, exposure, in-vitro-to-in-vivo-extrapolation-ivive, ivive
Organization: U.S. Environmental Protection Agency
Chemical Exposure Pathway Prediction for Screening and Priority-Setting

We created a consensus, meta-model using the Systematic Empirical Evaluation of Models framework in which the predictors of exposure were combined by pathway and weighted according to predictive ability for chemical intake rates inferred from human biomonitoring data for 114 chemicals. 

This dataset is associated with the following publication:
Ring, C., J. Arnot, D. Bennett, P. Egeghy, P. Fantke, L. Huang, K. Isaacs, O. Jolliet, K. Phillips, P. Price, H. Shin, J. Westgate, R. Setzer, and J. Wambaugh. Consensus Modeling of Median Chemical Intake for the U.S. Population Based on Predictions of Exposure Pathways.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 53(2): 719-732, (2019).

Tags: expocast, exposure, nhanes, seem
Organization: U.S. Environmental Protection Agency
Willingness to Pay for Vehicle Attributes 2010618

For multiple studies of vehicle demand, the parameters reported in the studies were used to calculate willingness to pay for a range of vehicle attributes, including performance and fuel economy. Citation information for this dataset can be found in the EDG's Metadata Reference Information section and Data.gov's References section.

Tags: fuel-efficiency, vehicle-attribute, vehicle-choice, willingness-to-pay
Organization: U.S. Environmental Protection Agency
Fluoride removal data

The dataset includes raw data of adsorption isotherms of fluoride adsorption; adsorption kinetics of fluoride onto ferrihydrite, hydroxyapatite, and brucite; breakthrough curves; and fitting of experimental data to the Thomas equation. 

This dataset is associated with the following publication:
Wallace, A.R., C. Su, and W. Sun. Adsorptive Removal of Fluoride from Water Using Nanomaterials of Ferrihydrite, Apatite, and Brucite: Batch and Column Studies.   ENVIRONMENTAL ENGINEERING SCIENCE. Mary Ann Liebert, Inc., Larchmont, NY, USA, 36(5): 634-642, (2019).

Tags: adsorption-isotherm, adsorption-kinetics, desorption, fluoride-adsorption, fluoride-removal, hydrooxide-nanomaterials
Organization: U.S. Environmental Protection Agency
X-Ray absorption spectra

This file contains three separate spreadsheets that each contain the data used in Figures 1, 2 and 3 respectively. The data shows the oxidation state of Ce nanoparticles in or on barley roots. 

This dataset is associated with the following publication:
Rico, C.M., M.G. Johnson, and M.A. Marcus. Cerium oxide nanoparticles transformation at the root-soil interface of barley (Hordeum vulgare L.).   Environmental Science: Nano. RSC Publishing, Cambridge,  UK, 5: 1807-1812, (2018).

Tags: ammonium-nitrate, engineered-nanomaterials-enms, intergenerational-effects, isotope, isotopic-discrimination, nanoceria, nanomaterial-transformation, nitrogen, reduction, synchrotron-micro-x-ray-flourescence
Organization: U.S. Environmental Protection Agency
Content analysis of quality of vehicle technologies and operational characteristics in automobile reviews

Auto reviews for model-year 2014 and 2015 vehicles were critically read to determine whether vehicle technologies and operational characteristics were evaluated as positive, negative, or neutral. Citation information for this dataset can be found in the EDG's Metadata Reference Information section and Data.gov's References section.

Tags: content-analysis, fuel-economy-standards, light-duty-vehicles, vehicle-fuel-saving-technology, vehicle-greenhouse-gas-standards, vehicle-operational-characteristics
Organization: U.S. Environmental Protection Agency
Spatial Variation of Bioturbation and Physical Mixing in Louisiana Continental Shelf Hypoxic Zone

Sediment chemistry and  data used to interpret sediment profiling camera images. 

This dataset is associated with the following publication:
Devereux, R., J. Lehrter, G. Cicchetti, D. Beddick, D. Yates, B. Jarvis, J. Aukamp, and M. Hoglund. Spatially Variable Physical Energy and Bioturbation Drive the Biogeochemical Seascape in the Louisiana Continental Shelf Hypoxic Zone.   BIOGEOCHEMISTRY. Springer, New York, NY, USA, 143(2): 151-169, (2019).

Tags: benthic-infauna, bioturbation, chemistry-infauna, gulf-of-mexico, hypoxia, sediments
Organization: U.S. Environmental Protection Agency
Consumer Choice model data to compare MY 2008 vehicle attributes with those for MYs 2010 and 2016

CVCM_Input_testRun02.0P 04302014.xls starts with MY 2008 vehicles and adds changes associated with MY 2010 vehicles. CVCM_Input_TestRun_2016v3_11212018.xls also starts with MY 2008 vehicles and adds changes associated with MY 2016 vehicles. Citation information for this dataset can be found in the EDG's Metadata Reference Information section and Data.gov's References section.

Tags: consumer-vehicle-choice-modeling, discrete-choice-modeling, validation, vehicle-demand
Organization: U.S. Environmental Protection Agency
Influence of bromine and iodine chemistry on annual, seasonal, diurnal, and background ozone

COMBINE_CONC_B_2006_annual_O3_AVG.tar contains annual average model predicted ozone without bromine/iodine chemistry

COMBINE_CONC_C_2006_annual_O3_AVG.tar contains annual average model predicted ozone with bromine/iodine chemistry

COMBINE_CONC_D_2006_annual_O3_AVG.tar contains annual average model predicted ozone with bromine chemistry

COMBINE_CONC_E_2006_annual_O3_AVG.tar contains annual average model predicted ozone with iodine  chemistry

COMBINE_CONC_B_2006_annual_O3_NoAnth_NA_AVG.tar contains annual average model predicted ozone without bromine/iodine chemistry and without anthropogenic emission over North America 

COMBINE_CONC_C_2006_annual_O3_NoAnth_NA_AVG.tar contains annual average model predicted ozone with bromine/iodine chemistry and without anthropogenic emission over North America. 

This dataset is associated with the following publication:
Sarwar, G., B. Gantt, K. Foley, K. Fahey, T. Spero, D. Kang, R. Mathur, H. Foroutan, J. Xing, T. Sherwen, and A. Saiz-Lopez. Influence of bromine and iodine chemistry on annual, seasonal, diurnal, and background ozone: CMAQ simulations over the Northern Hemisphere.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 213: 395-404, (2019).

Tags: atmospheric-chemistry, bromine, cmaq, iodine, ozone
Organization: U.S. Environmental Protection Agency
Supporting information including chromatography, mass spectrometry peak areas, and additional supplemental material for product.

The dataset contains supporting information, chromatographic details and some of the background information used to generate figures and plots for the product. Particular details include the area of peaks measured by mass spectrometry, the number of compounds identified of given masses (i.e isomers), and structural information about possible transformation products. The full supporting information for the manuscript is also included. 

This dataset is associated with the following publication:
Duan, X., T. Sanan, A. Delacruz, X. He, M. Kong, and D. Dionysiou. Susceptibility of the Algal Toxin Microcystin-LR to UV/Chlorine Process: Comparison with Chlorination.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 52(15): 8252-8262, (2018).

Tags: advanced-oxidation-processes-aops, disinfection-byproducts-dbps, microcystin-lr, uv-chlorine, uv-leds
Organization: U.S. Environmental Protection Agency
Mill Creek DNA biodiversity 2016 for SH

OTU sequence reads by sample, along with assigned taxonomy. 

This dataset is associated with the following publication:
Bagley, M., E. Pilgrim, M. Knapp, C. Yoder, J. Santodomingo, and A. Banerji. High-throughput environmental DNA analysis informs a biological assessment of an urban stream.   ECOLOGICAL INDICATORS. Elsevier Science Ltd, New York, NY, USA, 104: 378-389, (2019).

Tags: aquatic-life-use, bioassessment, biological-impairment, edna
Organization: U.S. Environmental Protection Agency
Glucocorticoid Ligand Mixtures Bioassay 3

Raw data for each glucocorticoid ligand mixtures experiment. 

This dataset is associated with the following publication:
MedlockKakaley, E., M. Cardon, E. Gray, P. Hartig, and V. Wilson. Generalized concentration addition model predicts glucocorticoid activity bioassay responses to environmentally detected receptor-ligand mixtures.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,   252-263, (2019).

Tags: chemical-mixtures, effects-based-screening, generalized-concentration-addition-model, glucocorticoid-receptor, partial-agonist
Organization: U.S. Environmental Protection Agency
Latitudinal patterns shelf fauna SCIHUB

The dataset includes benthic infaunal abundance data derived from the EPA National Coastal Assessment and Southern California Coastal Water Research Program Bight ’03 studies west coast shelf assessment studies in 2003, that were combined to form a composite data matrix of 255 stations by 1470 taxa.  NCA successfully sampled 146 stations from Cape Flattery, WA, to Pt. Conception, CA in the period June 1 - 26, 2003 (NOAA Cruise AR-03-01-NC), with data from one additional NCA station off Santa Catalina Island provided to the study by SCCWRP. Fifty stations each within Washington and Oregon and 47 stations from California were successfully sampled. An additional 110 stations, located within the Channel Islands National Marine Sanctuary (27) and throughout the Southern California Bight (83, Pt. Conception, CA to the Mexican border), were successfully sampled for some or all of the NCA parameters within the target depth range by participants in the Bight ’03 survey (Ranasinghe et al. 2007). Benthic macrofaunal samples were obtained from these 257 stations, but two stations (OR03-0010, CA03-4339) failed quality assurance checks, and the final total included benthic samples from 255 stations. 

This dataset is associated with the following publication:
Henkel, S., and W. Nelson. Assessment of spatial patterns in benthic macrofauna of the U.S. west coast continental shelf.   Journal of Biogeography. Blackwell Publishing, Malden, MA, USA, 45(12): 2701-2717, (2018).

Tags: benthic-assemblage, benthic-infauna, biogeographic-province, latitudinal-gradients, national-coastal-assessment, nca, nonindigenous, sediment-contaminants, species-richness, toc
Organization: U.S. Environmental Protection Agency
Glucocorticoid Ligand Mixtures Bioassay 2

Raw data for glucocorticoid receptor ligand exposure experiments. 

This dataset is associated with the following publication:
MedlockKakaley, E., M. Cardon, E. Gray, P. Hartig, and V. Wilson. Generalized concentration addition model predicts glucocorticoid activity bioassay responses to environmentally detected receptor-ligand mixtures.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,   252-263, (2019).

Tags: chemical-mixtures, effects-based-screening, generalized-concentration-addition-model, glucocorticoid-receptor, partial-agonist
Organization: U.S. Environmental Protection Agency
Glucocorticoid Ligand Mixtures Bioassay 1

Raw data for glucocorticoid receptor ligand exposure experiments. 

This dataset is associated with the following publication:
MedlockKakaley, E., M. Cardon, E. Gray, P. Hartig, and V. Wilson. Generalized concentration addition model predicts glucocorticoid activity bioassay responses to environmentally detected receptor-ligand mixtures.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,   252-263, (2019).

Tags: chemical-mixtures, effects-based-screening, generalized-concentration-addition-model, glucocorticoid-receptor, partial-agonist
Organization: U.S. Environmental Protection Agency
Genome Sequence Data Set01

The fasta files (Genome_Set01.zip) contain the reference-assisted de novo assemblies (as contigs) of four Campylobacter spp. isolates. The table contains rows as isolates (yellow) and columns as attributes (green) for each individual genome. 

This dataset is associated with the following publication:
Gomez-Alvarez, V., N. Ashbolt, J. Griffith, J. Santo Domingo, and J. Lu. Whole-Genome Sequencing of Four Campylobacter strains Isolated from Gull Excreta collected from Hobie Beach (Oxnard, CA, USA).   Microbiology Resource Announcements. American Society for Microbiology, Washington, DC, USA, 8(32): e00560-19, (2019).

Tags: antibiotic-resistance-genes, assembly, california-gull, campylobacter, draft-genome, isolates, larus-californicus
Organization: U.S. Environmental Protection Agency
Draft Escherichia bacteriophage genome sequences from raw wastewater

Somatic coliphages are alternative indicators of fecal pollution and are attractive surrogate for viral pathogens. Here we report the draft genome sequences of three replicate plaques from a novel myoviridae bacteriophage isolated from raw wastewater. Genomes were similar to felix01virus phage and are predicted to contain up to 159 protein coding genes. 

This dataset is associated with the following publication:
Keely, S., M. Herrmann, A. Korajkic, N. Brinkman, B. McMinn, S. Fout, and E. Villegas. Genome Sequences of Escherichia Bacteriophages Isolated from Raw Wastewater.   Microbiology Resource Announcements. American Society for Microbiology, Washington, DC, USA, 8(26): e00135-19, (2019).

Tags: illumina-sequencing, indicator, somatic-coliphage, wastewater
Organization: U.S. Environmental Protection Agency
Data for Composition and Structural Information of Nitroaromatic Compounds in Organic Aerosols from Laboratory Biomass Burning

Dataset containing the composition and structural description of nitroaromatic compounds from biomass burning emissions. 

This dataset is associated with the following publication:
Xie, M., X. Chen, M. Hays, and A. Holder. Composition and light absorption of N-containing aromatic compounds in organic aerosols from laboratory biomass burning.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 19(5): 2899-2915, (2018).

Tags: aerosol-optical-properties, black-carbon, brown-carbon, combustion-emissions, fine-particulate-matter, secondary-organic-aerosol
Organization: U.S. Environmental Protection Agency
Biodesalination of Brackish Water Using Halophytic Algae

The raw data from experiments on the pilot-scale photobio-reactor that represent growth of Euglena deses and Chlorella vulgaris and salt uptake. 

This dataset is associated with the following publication:
Sahle-Demessie, E., A.A. Hassan, and A.E. Badawy. Bio-desalination of brackish and seawater using halophytic algae.   DESALINATION. Elsevier Science Ltd, New York, NY, USA, 465: 104-113, (2019).

Tags: and-chlorella-vulgaris, desalination, halophyte-algae, scenedesmus-sp
Organization: U.S. Environmental Protection Agency
Environmental fate of multiwalled carbon nanotubes and graphene oxide across different aquatic ecosystems

Excel files and text files with lab results and model time series output data. 

This dataset is associated with the following publication:
Avant, B., D. Bouchard, H. Hsieh, Y. Han, J. Spear, R. Zepp, C. Knightes, X. Chang, and B. Acrey. Environmental fate of multiwalled carbon nanotubes and graphene oxide across different aquatic ecosystems.   NanoImpact. Elsevier B.V., Amsterdam,  NETHERLANDS, 13: 1-12, (2019).

Tags: fate-and-transport, graphene-oxide, multiwalled-carbon-nanotubes, nanomaterials, wasp
Organization: U.S. Environmental Protection Agency
Nanoparticle Results Dataset

The dataset contains journal article table and figure results. 

This dataset is associated with the following publication:
Salih, H., A. El Badawy, T. Tolaymat, and C. Patterson. Removal of Stabilized Silver Nanoparticles from Surface Water by Conventional Treatment Processes.   Advances in Nanoparticles. Scientific Research Publishing, Inc., Irvine, CA, USA, 8(2): 21-35, (2019).

Tags: drinking-water, nanoparticles, silver, water-treatment
Organization: U.S. Environmental Protection Agency