AndreaBozzo/ceres-open-data-index huggingface dataset:
AFSC/RACE/SAP/Long: Effects of ocean acidification on respiration, feeding, and growth of juvenile red and blue king crabs (Paralithodes camtschaticus and P. platypus)

Juvenile red and blue king crabs (Paralithodes camtschaticus and P. platypus) were exposed to three pH levels: ambient (pH 8.1), pH 7.8, and pH 7.5 for three weeks.  Oxygen consumption and feeding ration were determined immediately after exposure to treatment water and after three weeks exposure.  Growth can be calculated from the wet mass observations.

Tags: alaska, alaska fisheries science center, bering sea, bristol bay, diet, doc/noaa/nmfs/afsc, growth, gulf of alaska, juvenile, kodiak, national marine fisheries service, noaa, ocean acidification, shellfish assessment program, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/ABL: Stock composition, timing, and spawning distribution of Yukon River Chinook salmon

Radio telemetry was used to determine the distribution, locate spawning sites, and evaluate the tagging response of wild Chinook salmon Oncorhynchus tshawytscha returning to a large, free-flowing river basin.  A total of 2,860 fish were radio tagged in the lower Yukon River and tracked upriver.  Fish traveled to spawning areas throughout the basin, ranging from several hundred to over 3,000 km from the tagging site.  We found similar distribution patterns across years, suggesting that the major components of the return were identified.  Most spawning fish were clustered in a number of principal tributaries, although small numbers of fish were located in other spatially-isolated areas.  The cumulative contribution of these minor stocks was appreciable, making up 28-31% of the tagged sample.  There was suggestive evidence of mainstem spawning in upper reaches of the basin.  Large-scale elevation and physiographic data were useful in categorizing spawning areas, with most fish returning to relatively entrenched upland rivers.  Fish were largely absent in lowland reaches characterized by meandering, low gradient, alluvial channels often associated with main river floodplains.  The fish generally responded well to the capture, handling, and tagging procedures with most (2,790, 97.6%) resuming upriver movements, although the fish initially displayed a negative tagging response, with slower migration rates observed immediately after release.  The duration of this response was relatively short (several days) and less severe as the fish moved upriver.  The swimming speeds of radio-tagged fish after the initial delay were comparable to estimates for untagged fish, further suggesting that the capture, handling, and tagging methods used were relatively benign.  Identifying the primary components of the run (including both major and minor stocks) and determining site-specific utilization patterns can fundamentally enhance salmon management in large river basins, and facilitate research and conservation efforts.

Tags: alaska, alaska fisheries science center, auke bay laboratories, chinook salmon, doc/noaa/nmfs/afsc, national marine fisheries service, noaa, u.s. department of commerce, yukon river
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/ABL: Chum salmon length and weight monitoring at Fish Creek (Hyder, AK), Chilkat River (Haines, AK), Olsen Creek (Cordova, AK), and Quilcene River (Quilcene, WA)

Changes in size and age at maturity of chum salmon (Oncorhynchus keta) were monitored for two locations in North America. Chum salmon spawners returning to Fish Creek, southeastern Alaska, were sampled yearly from 1972 through 1996. Spawners retuning to the Quilcene National Fish Hatchery in Hood Canal, Washington, were sampled yearly from 1973 through 1996. Size at maturity of both populations declined significantly from about 1980 to the mid-1990s. Age at maturity increased during this time. These changes were associated with a major ocean climate regime shift in the North Pacific Ocean that occurred in 1976-77. Population abundance of chum salmon increased greatly after the regime shift, especially in Asia. Similar changes in size and age at maturity occurred in Asian chum salmon; because the range of North American and Asian chum salmon overlaps on the high seas, these changes are discussed in relation to possible density-dependent population factors. Since the mid-1990s, size at maturity and population abundance have increased, possibly indicating another climate change in the North Pacific Ocean.

Tags: age, alaska, alaska fisheries science center, auke bay laboratories, chilkat river, chum salmon, cordova, doc/noaa/nmfs/afsc, growth, haines, hyder, national marine fisheries service, noaa, olsen creek, oncorhynchus keta, quilcene, quilcene river, scale, size, u.s. department of commerce, washington
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/ABL: Chum salmon allozyme baseline

Allozymes from 46 loci were analyzed from chum salmon (Oncorhynchus keta) collected at 61 locations in southeast Alaska and northern British Columbia.  Of the 42 variable loci, 21 had a common allele frequency <0.95.  We observed significant heterogeneity within and among six regional groups: central southeast Alaska, Prince of Wales Island area, southern southeast Alaska b?? northern British Columbia, north-central British Columbia, and two groups in the Queen Charlotte Islands.  Genetic variation among regions was significantly greater than within regions.  The three island groups were distinct from each other and from the mainland populations.  Allele frequencies were stable over time in 14 of 15 locations sampled for more than 1 yr.  The geographic basis for heterogeneity among regions is confounded in part by spawning-time differences.  The Prince of Wales and Queen Charlotte populations spawn in the fall; the mainland populations spawn mainly in the summer, although some overlap exists.  Overall, most genetic diversity (97%) occurred within sampling locations; the remaining diversity was distributed almost equally within and among regions.  Our genetic data may provide fishery managers a means to estimate stock composition in the mixed-stock fisheries near this boundary between the United States and Canada.

Tags: alaska, alaska fisheries science center, auke bay laboratories, doc/noaa/nmfs/afsc, national marine fisheries service, noaa, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Integrated Federal Employees' Compensation System (iFECS)

The integrated Federal Employees' Compensation System (iFECS) is a mission-critical steady state system that supports the Office of Workers' Compensation Programs' (OWCP) Division of Federal Employees' Compensation (DFEC). System capabilities include: processing injury claims, paying workers' compensation benefits, and supporting other financial and administrative activities for DFEC.

Tags: dol-ecomp, ifecs
Organization: Department of Homeland Security
AFSC/ABL: Yukon Delta Juvenile Chinook Salmon - River, 2014-2015

This dataset contains 2-boat tow, push net and scoop net catches from the Yukon River Delta for 2014

Tags: alaska fisheries science center, auke bay laboratories, chinook salmon, doc/noaa/nmfs/afsc, national marine fisheries service, noaa, u.s. department of commerce, yukon river
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/ABL: Seafloor Habitat Assessment

Since 1988, scientists at the Auke Bay Laboratories have been using the /Delta/ submarine for a wide range of research projects. Over 500 dives have been completed. The video collected during these projects provides valuable direct observations of seafloor habitat and biological attributes. This project is assembling a database that will include dive locations and basic biological and substrate information from each of the dives. To date, biological and substrate data have been processed for about 40% of the dives.

Tags: ak, alaska, alaska fisheries science center, aleutian islands, auke bay laboratories, doc/noaa/nmfs/afsc, effects of fishing, fish census, fish distribution, goa, gulf of alaska, habitat survey, longline catchability, national marine fisheries service, noaa, submarine dive, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/RACE/SAP/Daly: Juvenile red and blue king crab prey preference experiment conducted in the Kodiak Lab in 2014

This dataset is part of a laboratory experiment, which evaluated how varying ratios of prey species (year-0 blue and red king crabs) and habitat type (shell and cobble) affect prey preference of year-1 red king crabs. The data includes experimental duration, tank number, predator species, prey species, substrate type, initial and final prey densities, number of prey eaten, crypsis indices, and survival.

Tags: alaska, alaska fisheries science center, competition, doc/noaa/nmfs/afsc, foraging, juvenile, life history, mortality, national marine fisheries service, noaa, predator, prey, pribilof islands, shellfish assessment program, survival, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/ABL: The Gulf of Alaska Survey, 2010 to 2017

The scientific objective of the Gulf of Alaska Survey (GOA Survey) is to assess Young of the Year (YOY) groundfish, salmon, plankton, and oceanographic conditions across the coastal, shelf, slope, and offshore waters of the GOA and to provide information on species distribution, ecosystem structure, and marine productivity in response to changes in season, region, and climate. Specific objectives are to 1) observe epi-pelagic fish communities by sampling with a rope trawl towed at the surface; 2) collect electronic oceanographic data including CTD (Conductivity-temperature-depth) vertical profiles of temperature, salinity, light transmission, chlorophyll a fluorescence, and photosynthetic available radiation (PAR); and 3) collect biological oceanographic samples (zooplankton and water) by oblique bongo tows and water sampling.

Tags: alaska, alaska fisheries science center, auke bay laboratories, doc/noaa/nmfs/afsc, ecosystem monitoring, fisheries, forage fish, ground fish, gulf of alaska, national marine fisheries service, noaa, oceanography, salmon, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/ABL: 2006 Chum Salmon Bycatch Sample Analysis  Bering Sea

A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2006 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was undertaken to determine the overall stock composition of the sample set. Samples were genotyped for eleven microsatellite markers and results were estimated using the current chum salmon microsatellite baseline. In 2006, genetic samples were collected opportunistically as part of a special project, but sample biases have the potential to affect stock composition analysis results.  Consequently, stock composition estimates apply to the sample set and may not represent the entire chum salmon bycatch.  Based on the analysis of 1,367 chum salmon bycatch samples collected throughout the 2006 Bering Sea trawl fishery, North Asian (31%), East Asian (29%), and Pacific Northwest (25%) stocks dominated the sample set with smaller contributions from Western Alaska (8%) and Upper/Middle Yukon River (6%) stocks.  The estimates for the 2006 chum salmon bycatch sample set were similar to the 2005 and 2009 chum salmon bycatch estimates, suggesting consistency of the regional stock contributions across years. Analysis of temporal groupings within the groundfish B season revealed changes in stock composition during the course of the season with decreasing contribution of Upper/Middle Yukon stocks over time, but leaves unanswered whether these changes are due to temporal or spatial differences in the sample set.

Tags: alaska, alaska fisheries science center, auke bay laboratories, bering sea, bycatch, chum salmon, doc/noaa/nmfs/afsc, genetic stock identification, national marine fisheries service, noaa, oncorhynchus keta, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Coordinated Needs Management System/New, Validated, and Updated Engineering Miles

FEMA’s Coordinated Needs Management Strategy (CNMS) uses a geospatial database to identify and track flood hazard study lifecycle and mapping needs within the flood hazard mapping program. CNMS supports community officials and FEMA personnel in analyzing and depicting the validity of flood studies to enhance the understanding of flood hazard risk and make informed decisions on community planning and flood mitigation.

Tags: threats-and-hazards
Organization: Department of Homeland Security
AFSC/RACE/MACE: Results of 2010 Acoustic-trawl survey of the Shumagin Islands, Sanak Trough, Kenai Peninsula bays and Prince-william sound dy1001

Scientists from the Midwater Assessment and Conservation Engineering (MACE) Program of the Alaska Fisheries Science Center's (AFSC) Resource Assessment and Conservation Engineering (RACE) Division routinely conduct acoustic-trawl (AT) stock assessment surveys in the Gulf of Alaska (GOA) during late winter and early spring to estimate the distribution and abundance of walleye pollock (Theragra chalcogramma).  Historically, most of these efforts have been focused on the Shelikof Strait area, which has been surveyed annually since 1980, except in 1982 and 1999.  The Shumagin Islands area has also been surveyed annually since 2005 with prior surveys in 1994-1996 and 2001-2003.  Additionally, the GOA continental shelf break east of Chirikof Island to Barnabas Trough has been surveyed annually since 2002.  In 2010, survey activities were expanded to include Morzhovoi Bay, Pavlof Bay, the bays along the southern coast of the Kenai Peninsula, and Prince William Sound.  This report presents the distribution and abundance of walleye pollock for all AT surveys conducted in the GOA during February and March 2010 along with acoustic system calibration and physical oceanographic results.

Tags: afsc/race/mace: pollock acoustic/trawl survey spawning annual shumagins, alaska fisheries science center, doc/noaa/nmfs/afsc, national marine fisheries service, noaa, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/ABL: Auke Bay Climatology 1959-2013

Data set includes available climatological and related physical environmental records for Auke Bay, Auke Creek and Auke Lake beginning in 1959.  Daily high and low air temperatures,  precipitation, snow fall, snow on the ground,  cloud cover, sea surface temperature, surface salinity, Secchi disc depth and water color are taken at the Auke Bay Laboratory.  Daily stream temperatures are taken at the Auke Creek Weir. Three meter depth Auke Lake Temperatures are recorded and the Auke Creek Hatchery in take pipe in the lake.

Tags: ak, alaska fisheries science center, auke bay, auke bay laboratories, daily records of air temperature, doc/noaa/nmfs/afsc, juneau, lake temperature, national marine fisheries service, noaa, precipitation, snowfall, stream temperature, surface, surface salinity, u.s. department of commerce, water color, water transparency
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AFSC/ABL: Southeast Alaska Estuaries Data

The dataset contains trawl and seine catches from Southeast Alaskan estuaries sampled from 1995 to 2008.  The data also include physical variables (temp, salinity, turbidity), and shorezone shoreline classifications.

Tags: alaska, alaska fisheries science center, auke bay laboratories, doc/noaa/nmfs/afsc, estuaries, fish, invertebrates, national marine fisheries service, noaa, shorezone, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Library LinkOut

LinkOut is a service that allows you to link directly from PubMed and other NCBI databases to a wide range of information and services beyond the NCBI systems. LinkOut aims to facilitate access to relevant online resources in order to extend, clarify, and supplement information found in NCBI databases.

Third parties can link directly from PubMed and other Entrez database records to relevant Web-accessible resources beyond the Entrez system. Includes full-text publications, biological databases, consumer health information and research tools.

Tags: library-services, literature, tools-utilities
Organization: U.S. Department of Health & Human Services
Emergency Notification System (ENS) Group Types

There are 2 possible group types within Emergency Notification System (ENS):rnrnStatic Group - is a table within the database in which contacts are selected from the list and added to the group (table) manuallyrnrnDynamic Group - is created when contacts are included by identifying specific criteria with which to define the group.  Members are not added manually but become part of the group based on common attributes.  These could inlude position, Region, team membership, etc.

Tags: communications
Organization: Department of Homeland Security
ENS Scenario Templates

Scenario Templates are pre-defined configurations of scenario activation parameters.  These may include:rn* Type of deliveryrn* Durationrn* Devices to be contacted and in what orderrn* Number of attemptsrn* Groups to be contacted (groups contain indivual contacts)rn* Priority of noficationrn* Call flowrn* Messages to be deliveredrn* Automatic generation of reportsrn* Scheduled activation

Tags: communications
Organization: Department of Homeland Security
Parcel Lines

<span style='font-family:&quot;Avenir Next W01&quot;, &quot;Avenir Next W00&quot;, &quot;Avenir Next&quot;, Avenir, &quot;Helvetica Neue&quot;, sans-serif; font-size:16px;'>This parcel data has been compiled from deeds, maps, assessor records, and other public records on file in the City of Hartford.  The intent of this data layer is to depict a graphical representation of real property information relative to the planimetric features for the City of Hartford and is subject to change as a more accurate survey may disclose.  </span>

Tags: development, hartford-ct, housing, parcels
Organization: City of Hartford
NRZ Boundaries

<span style='font-family:&quot;Avenir Next W01&quot;, &quot;Avenir Next W00&quot;, &quot;Avenir Next&quot;, Avenir, &quot;Helvetica Neue&quot;, sans-serif; font-size:16px;'>This layer contains the boundaries of the Neighborhood Revitalization Zones.</span>

Tags: development, hartford-ct, housing, nrz
Organization: City of Hartford
Neighborhood Districts

<span style='font-family:&quot;Avenir Next W01&quot;, &quot;Avenir Next W00&quot;, &quot;Avenir Next&quot;, Avenir, &quot;Helvetica Neue&quot;, sans-serif; font-size:16px;'>This data layer contains the boundaries for the City of Hartford neighborhoods.</span>

Tags: development, hartford-ct, housing, neighborhood
Organization: City of Hartford
SPDI Variation Service

This genetic variation services interconvert and transform short genetic variants between HGVS expressions,  VCF format, and the new SPDI (Sequence Position Deletion Insertion) format, based on alignment datasets used by ClinVar and dbSNP.  NOTE: This service is still in beta testing mode

Tags: api, data-specifications, genetics, genomics, molecular-biology, tools-utilities
Organization: U.S. Department of Health & Human Services
PubChem

PubChem contains the chemical structures of small organic molecules and information on their biological activities. PubChem includes substance information, compound structures, and bioactivity data in three primary databases, PCSubstance, PCCompound, and PCBioAssay, respectively. PubChem is integrated with Entrez, NCBI's primary search engine, and also provides compound neighboring, sub/superstructure, similarity structure, bioactivity data, and other searching features. Technical documentation at 	http://pubchem.ncbi.nlm.nih.gov/help.html#faq

Tags: api, chemistry-physical, community-health, dataset, organic-chemicals
Organization: U.S. Department of Health & Human Services
Health Services Research Projects in Progress (HSRProj)

Health Services Research Projects in Progress (HSRProj) was a database of health services research and public health projects in progress, related to research in quality, cost, and access to health care. It included behavioral health research and public health research, with over 38,000 projects and information back to the 1990s.

This resource was retired on September 14, 2021 and is no longer updated.

Tags: health-services-research, public-health
Organization: U.S. Department of Health & Human Services
AFSC/ABL: Longline Survey Special Projects

Two-day experiments have been conducted as a separate leg on the Alaska Fisheries Science Centers longline survey since 1998. Experiments are conducted usually in the vicinity of Yakutat, Alaska in late July of each year. The majority of projects are longline gear related and include hook spacing experiments, hand versus auto bait gear comparisons, and bait type comparisons. Rockfish genetics and sperm whale depredation studies have also been conducted. Data collected during the two-day experiments include 100% hook census of catch, lengths of major species caught, and data collection procedures relevant to each individual study. The data are housed in a Microsoft Access database and maintained by the Marine Ecology and Stock Assessment group at the Auke Bay Laboratories.

Tags: alaska fisheries science center, auke bay laboratories, bait experiment, doc/noaa/nmfs/afsc, gear experiment, hook spacing, longline survey, national marine fisheries service, noaa, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
MedlinePlus

MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, the world’s largest medical library, it brings you information about diseases, conditions, and wellness issues in language you can understand. MedlinePlus offers reliable, up-to-date health information, anytime, anywhere, for free.

Tags: api, consumer-health, dataset, multilanguage, public-health
Organization: U.S. Department of Health & Human Services
CRCP-South Atlantic Bight Monitoring

The numbers of seven grouper and tilefish species were counted annually to evaluate the use of closed areas as a management tool to increase reef fish populations.

Tags: 2004-2010, atlantic ocean, conductivity, coral reef conservation program joint projects, ctd, ctd data, deep reef habitat and fishes, depth, doc/noaa/nmfs/sefsc, finss, florida, georgia, invasive species, lionfish, national marine fisheries service, noaa, noaa delaware ii, noaa ship delaware ii, north atlantic ocean, north carolina, ocean, pisces v, snowy wreck, south atlantic bight., south carolina, southeast fisheries science center, species, temperature, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Multibeam Mapping of Pulley Ridge, Gulf of Mexico, Key West, Florida

XYZ ASCII format high-resolution bathymetry data generated from the 2003, 2007, and 2009 combined multibeam sonar survey of Pulley Ridge, Gulf of Mexico, Key West, Florida.

Tags: atlantic ocean, bathymetry, bathymetry/seafloor topography, country/territory, doc/noaa/nmfs/sefsc, earth science, florida, florida reef tract, geographic information, gulf of mexico, key west, key west (25n080w0016), lower florida keys, monroe county, multibeam mapping, national marine fisheries service, noaa, north atlantic ocean, ocean, ocean basin, oceans, pulley ridge, pulley ridge hapc fish and coral survey_spring, r/v suncoaster, r/v weatherbird ii, southeast fisheries science center, u.s. department of commerce, united states of america
Organization: National Oceanic and Atmospheric Administration, Department of Commerce