AndreaBozzo/ceres-open-data-index huggingface dataset:
Genetic Data Associated with Avian Keratin Disorder and Poecivirus in Black-capped Chickadees, Alaska, 2001-2017

This dataset contains results of genetic screening for Poecivirus from samples of black-capped chickadees (BCCH; Poecile atricapillus) with and without clinical signs of avian keratin disorder (AKD). Data include information on detection/non-detection of the virus in tissue collected with buccal swabs, cloacal swabs, blood samples, and fecal samples from up to 124 individuals between 2015 and 2017 from various locations in southcentral Alaska. For an additional 17 symptomatic (and one asymptomatic) individual(s) collected between 2001 and 2015 in the same region, data include measurements of viral load in beak tissue measured by qRT-PCR as well as the amount of actively replicating virus detected by 7 negative-strand and 2 positive-strand oligonucleotide probes, all relative to amounts of host RNA. Ancillary data on beak measurements, clinical signs of AKD (beak overgrowth or hyperkeratosis at the cellular level), locations, and dates of collection are also included for each individual.

Tags: alaska, anchorage, animal-diseases, animals-vertebrates, avian-keratin-disorder, biological-science-disciplines, biology, biota, birds, black-capped-chickadee, chugiak, disease, disease-detection, eagle-river, environment, field-methods, genetics, health-and-disease, matanuska-valley, natural-science-disciplines, pathologic-processes, perching-birds, picornavirus, plant-and-animal-testing, poecivirus, susitna-valley, usgs-asc188, viral-diseases, virus, viruses, wasilla
Organization: Department of the Interior
Wind rose plots for the volcano: 221230  Gedamsa

This zip folder contains ASCII text files of vectors at the specified volcano at 
12-hour intervals, 
from January 1, 1990 through December 28, 2009.  
The wind vectors are divided into five files, names by their elevation range above 
sea level in the atmosphere: 00-05km.txt; 05-11km.txt; 11-16km.txt; 16-24km.txt; 
and 24-30km.txt. 
The zip folder also contains a subfolder "figures", with Wind rose plots of wind 
direction and speed over 
this time period.  The plots are by season, and by elevation, given a total of 20 
plots (4 seasons, 5 
elevation ranges).  A summary plot is also included which gives the year-round 
wind pattern at the volcano, 
at 0-5 km elevation.  Plots are in both jpg and pdf format.

Tags: meteorology, usgs-58d0103fe4b0236b68f52893, volcanic-ash, volcanic-eruption-forecasting, wind
Organization: Department of the Interior
Wind rose plots for the volcano: 311270  Vsevidof

This zip folder contains ASCII text files of vectors at the specified volcano at 
12-hour intervals, 
from January 1, 1990 through December 28, 2009.  
The wind vectors are divided into five files, names by their elevation range above 
sea level in the atmosphere: 00-05km.txt; 05-11km.txt; 11-16km.txt; 16-24km.txt; 
and 24-30km.txt. 
The zip folder also contains a subfolder "figures", with Wind rose plots of wind 
direction and speed over 
this time period.  The plots are by season, and by elevation, given a total of 20 
plots (4 seasons, 5 
elevation ranges).  A summary plot is also included which gives the year-round 
wind pattern at the volcano, 
at 0-5 km elevation.  Plots are in both jpg and pdf format.

Tags: meteorology, usgs-58d01555e4b0236b68f52f4d, volcanic-ash, volcanic-eruption-forecasting, wind
Organization: Department of the Interior
Intertidal Soft-Sediment Bivalves from Prince William Sound, Kachemak Bay, Katmai National Park and Preserve, and Kenai Fjords National Park

These data are part of the Gulf Watch Alaska (GWA) long-term monitoring program and describe bivalve count and size sampling and observations conducted at intertidal soft-sediment sampling sites in the northern Gulf of Alaska. This dataset consists of five comma separated files (.csv): 1) bivalve taxonomy table, 2) bivalve sampling site table, 3) bivalve count table, 4) bivalve size table, and 5) list of Gulf Watch Alaska principal investigators and collaborators.

Tags: alaska-peninsula, animals-invertebrates, aquatic-biology, aquatic-ecosystems, benthic-ecosystems, benthic-habitat, biota, bivalve, coastal-ecosystems, coastal-habitat, ecology, environment, field-inventory-and-monitoring, field-sampling, gulf-of-alaska, kachemak-bay, katmai-national-park-and-preserve, kenai-fjords-national-park, macroinvertebrates, marine-ecosystems, marine-environment-monitoring, marine-environments, mollusks, size-distribution, spatial-distribution, usgs-asc198, wildlife
Organization: Department of the Interior
Real-time kinematic global navigation satellite system (GNSS) and total station (TS) survey points at Muddy River, near Moapa, Nevada

This point shapefile contains positional data for 2,205 locations at the Muddy River, near Moapa, Nevada, April 1 to August 9, 2019. Positional data  were collected using either a single-base real-time kinematic (RTK) global navigation satellite system (GNSS) or a total station. The survey data primarily were used to define 105 cross-sections, with a secondary use as vertical precision verification for lidar data.

Tags: freshwater-ecosystems, inlandwaters, mathematical-modeling, moapa, moapa-valley, muddy-river, nevada, river-reaches, streamflow, surface-water-non-marine, usgs-61ba4033d34e9e224ac12ee3
Organization: Department of the Interior
Loss on ignition of soil in the area impacted by the 2017 Thomas Fire in California, USA

This Data Release summarizes measurements of hydraulic and physical properties of soils and ash at sites in the area impacted by the 2017 Thomas Fire, USA. Physical properties include dry bulk density, loss on ignition, and saturated soil water content. Hydraulic properties include field-saturated hydraulic conductivity, sorptivity, Green-Ampt wetting front potential, and soil water retention. These measurements provide a foundation to reduce uncertainty of parameters in hydrologic models used to predict water-related hazards, water quality, and water quantity. Note that all methods of data acquisition and processing, column headings, and data annotations are explained in the metadata files.

Tags: california, hydraulic-properties, santa-barbara-county, soil-properties, thomas-fire, usgs-5cc9e140e4b09b8c0b77fbde, ventura-county, wildfire
Organization: Department of the Interior
Wind rose plots for the volcano: 213020  Nemrut Dagi

This zip folder contains ASCII text files of vectors at the specified volcano at 
12-hour intervals, 
from January 1, 1990 through December 28, 2009.  
The wind vectors are divided into five files, names by their elevation range above 
sea level in the atmosphere: 00-05km.txt; 05-11km.txt; 11-16km.txt; 16-24km.txt; 
and 24-30km.txt. 
The zip folder also contains a subfolder "figures", with Wind rose plots of wind 
direction and speed over 
this time period.  The plots are by season, and by elevation, given a total of 20 
plots (4 seasons, 5 
elevation ranges).  A summary plot is also included which gives the year-round 
wind pattern at the volcano, 
at 0-5 km elevation.  Plots are in both jpg and pdf format.

Tags: meteorology, usgs-58d00fd1e4b0236b68f5280b, volcanic-ash, volcanic-eruption-forecasting, wind
Organization: Department of the Interior
Unprocessed aerial imagery from 28 September 2016 coastal survey of Southern California.

This is a set of 2671 oblique aerial photogrammetric images and their derivatives, collected from ptConception to Ventura with a fixed-lens digital camera from a crewed light aircraft, for processing using structure-from-motion photogrammetry and machine learning to study coastal geomorphic processes at high temporal and spatial resolution. JPG files in each folder follow the following naming convention: {CAM###}_{YYYYMMDDHHMMSS_ss}.jpg, where {CAM###} is the last 3 digits of the camera serial number, preceded by the letters "cam", and where {YYYYMMDDHHMMSS_ss} is the image acquisition time in {YearMonthDayHourMinuteSecond_hundredths} expressed in 24-hour time, as recorded by the camera's internal clock and written to the SubSecondDateTime field in the image EXIF data (for example CAM001_202009182311_50 would be the timestamp for an image with a SubSecondDateTime EXIF time/date stamp of September 18th, 2020 at 11:11.50 pm.

Tags: aerial-and-satellite-photography, aerial-photography, agents-of-coastal-change, anthropogenic-agents-of-coastal-change, cmhrp, coastal-and-marine-hazards-and-resources-program, coastal-development, coastal-ecosystems, coastal-erosion, coastal-landslides, coastal-processes, datasets, distributions, earth-sciences, ecology, environment, geography, geologic-processes, geology, geoscientificinformation, geospatial-datasets, habitat, image-analysis, image-collections, imagerybasemapsearthcover, infrastructure, pacific-coastal-and-marine-science-center, pcmsc, physical-habitats-and-geomorphology, remote-sensing, slope-processes, structures, u-s-geological-survey, united-states, united-states-and-territories, usgs, usgs-387d8dad-c087-46a1-aa45-c8ebda4b8e7e, visible-light-imaging
Organization: Department of the Interior
Magnetotelluric data from Missouri, Arkansas, Tennessee, Illinois, and Kentucky, 2016-2019, station rfr101

This dataset consists of 127 wideband and 21 long-period magnetotelluric (MT) stations collected from 2016-2019 across parts of Missouri, Arkansas, Tennessee, Illinois, and Kentucky. The U.S. Geological Survey (USGS) acquired these data as part of regional investigations into the geologic and tectonic framework of the area and to support mineral resource and geologic hazard investigations. These data have been used to generate a 3D regional conductivity model of the area. Files included in this publication include measured electric- and magnetic-field time series as well as estimated impedance and vertical-magnetic field transfer functions. The data included here are for MT station rfr101 in the Reelfoot Rift survey region. A shapefile with station information for all stations in this dataset is available at https://doi.org/10.5066/P9F7HFH7.

Tags: apparent-resistivity, arkansas, conductivity, electromagnetic-surveying, exploration, geologic-structure, geology-geophysics-and-geochemistry-science-center, geophysics, geoscientificinformation, gggsc, illinois, impedance, kentucky, magnetic-field-earth, magnetotelluric-surveying, magnetotellurics, mineral-resources, mineral-resources-program, mississippi-embayment, missouri, mrp, mt, ozark-plateau, phanerozoic, phase, precambrian, quaternary, reelfoot-rift, saint-francois-mountains, tectonics, tennessee, time-series, tipper, usgs-5f8a366f82ce3241878947d4
Organization: Department of the Interior
Water-Quality and Borehole Geophysical Data Associated with Uranium Background Concentrations at the Homestake Superfund Site near Milan, New Mexico:  2016 (ver. 1.2)

The datasets contained herein were collected as part of a cooperative U.S. Geological Survey (USGS) and U.S. Environmental Protection Agency (EPA) project entitled "Field Investigations to Help Support the Assessment of Background Concentrations for Uranium at the Homestake Mining Company, Superfund Site near Milan, New Mexico, July 2016."  Groundwater samples were collected from pre-selected wells and analyzed for metals (including uranium), alkalinity, ammonia, common ions, nitrogen, gross alpha/beta, radium isotopes, Radon-22, uranium isotopes, stable isotopes, sulfur isotopes, nitrogen isotopes, helium-4, dissolved gases, tritium/helium-3, carbon-14 and chlorofluorocarbons. Groundwater samples were collected using micropurge, volumetric, and passive samplers. Seven different laboratories analyzed the samples; separate datasets containing the results from each laboratory are provided in this data release. Microsoft excel .xlsx, xml, and tab-delimited text files are included for most dataset. A subset of the files are in .csv format.

Tags: carbon-isotope-analysis, cibola-county, isotopes, milan, new-mexico, radchem, radiometric-dating, radium, uranium, usgs-59b98caae4b091459a54da83
Organization: Department of the Interior
Serological Data on Influenza A from Birds and Mammals on the Arctic Coastal Plain of Northern Alaska, 2011-2017

These data (in two spreadsheets) are the results of screening for influenza A viruses (IAV) in blood from wild animals that utilize the Arctic region of Alaska. 758 blood samples from nine wildlife species (3 mammal, 6 waterbird) were collected in Arctic Alaska, 2011-2017. Two different tests were used and the results are presented in separate spreadsheets. All blood samples were screened for IAV antibodies using a blocking enzyme-linked immunosorbent assay (bELISA). A subsample of 63 blood samples were screened by hemagglutination inhibition (HI) assays to identify hemagglutinin (HA) subtype-specific antibodies for comparison among taxa.

Tags: ackerman-lake, animals-vertebrates, aquatic-birds, arctic-fox, bears, beaufort-sea, biosphere, biota, birds, black-brant, canidae, caribou, carnivores, chandalar-lake, chipp-river, colville-river-delta, deer-moose, diagnosis, dogs-foxes-wolves, ducks-geese-swans, ecological-dynamics, environment, enzyme-linked-immunosorbent-assay, even-toed-ungulates, greater-white-fronted-goose, health, health-and-disease, hemagglutination-inhibition-tests, iav, immunologic-techniques, indian-creek, influenza, influenza-a-virus, lesser-snow-goose, lonely-air-station, loons, mammals, north-slope, pacific-loon, pathology, polar-bear, red-throated-loon, respiratory-tract-infections, robert-creek, species-population-interactions, state-of-alaska, tobin-creek, tobin-pass, ungulates, usgs-asc199, utqiagvik, viral-diseases, viruses, waterfowl, wildlife-disease, yellow-billed-loon
Organization: Department of the Interior
Coastwide Reference Monitoring System (CRMS) 2016 Site 0315 land-water classification data

Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in Louisiana rely on monitoring efforts to determine the efficacy of these efforts. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum. As part of CRMS, land and water classifications are created from Digital Orthophoto Quarter Quadrangles (DOQQs) approximately every three years at all CRMS sites. A DOQQ is a raster image in which displacement in the image caused by sensor orientation and terrain relief has been removed and combines the image characteristics of a photo with geometric qualities of a map. The DOQQs generated for this project consist of 2016 Color Infrared (CIR) Digital Imagery. These images were classified into land and water categories using a threshold of the near infrared (NIR) band, followed by supervised and unsupervised classification.  Initial classification results are then reviewed by multiple image analysts to identify and manually recode errors. The final land-water classifications are intended to serve as both geographic and quantitative assessments of landscape composition on the date of acquisition. Three previous assessments have been conducted (2005, 2008, and 2012). Once the program creates enough data points for statistical analyses, these data will be used for land area change rate calculation.

Tags: alteration-of-wetland-habitats, cartography, coastal, coastal-louisiana, crms, doqq, emergent-wetland, forested-wetland, geographic-information-system, imagerybasemapsearthcover, land-water, louisiana, mapping, marsh, protection, restoration, scrub-shrub-wetland, state-of-louisiana, usgs-5b5f527be4b006a11f66ea4f, wetland, wetland-ecosystems, wetland-restoration
Organization: Department of the Interior
Alaska Tephra Data, 2018

This USGS Data Release presents major-oxide glass geochemical results from tephras erupted form Alaska volcanoes. This data set is in support of volcano hazard studies by the Alaska Volcano Observatory (AVO) where tephra (volcanic ash) deposits are used to assess eruption frequency, magnitude, and character of eruption. These data are part of a larger effort to identify and characterize tephra deposits from Alaskan volcanoes and the data set will continue to grow (versioned) as new data are generated.

Tags: alaska, aleutian-islands, beach-deposits, deposition, driftwood-bay, earth-science, erosion-sedimentation, fox-islands, geochemistry, geoscientificinformation, land-surface, nikolski, sedanka-island, sediment-chemistry, stardust-bay, tephra-deposits, tsunamis, umnak-island, usgs-asc190, volcanology
Organization: Department of the Interior
Wind rose plots for the volcano: 300050  Ksudach

This zip folder contains ASCII text files of vectors at the specified volcano at 
12-hour intervals, 
from January 1, 1990 through December 28, 2009.  
The wind vectors are divided into five files, names by their elevation range above 
sea level in the atmosphere: 00-05km.txt; 05-11km.txt; 11-16km.txt; 16-24km.txt; 
and 24-30km.txt. 
The zip folder also contains a subfolder "figures", with Wind rose plots of wind 
direction and speed over 
this time period.  The plots are by season, and by elevation, given a total of 20 
plots (4 seasons, 5 
elevation ranges).  A summary plot is also included which gives the year-round 
wind pattern at the volcano, 
at 0-5 km elevation.  Plots are in both jpg and pdf format.

Tags: meteorology, usgs-58d0145be4b0236b68f52e16, volcanic-ash, volcanic-eruption-forecasting, wind
Organization: Department of the Interior
Radiocarbon, Cesium-137, Grain Size, and X-ray Fluorescence Data for Tsunami Geology Investigation, Driftwood Bay, Umnak Island, Alaska (2018)

This dataset consists of nine tables that include radiocarbon dates, Cesium-137 activity, grain size measurements, and scanning X-ray fluorescence element intensity counts.

Tags: alaska, aleutian-islands, beach-deposits, carbon-14-analysis, coastal-processes, deposition, driftwood-bay, earth-science, earthquakes, fox-islands, geomorphic-landforms-processes, geoscientificinformation, hazards, land-surface, megathrust, nikolski, subduction, tectonic-processes, tephra-deposits, topography, tsunamis, umnak-island, usgs-asc191
Organization: Department of the Interior
Coastwide Reference Monitoring System (CRMS) 2005, 2008, 2012, 2016 and 2018 Site 0409 land-water matrix

Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in Louisiana rely on monitoring to determine the efficacy of these projects. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum. As part of CRMS, land and water classifications are created from Digital Orthophoto Quarter Quadrangles (DOQQs) approximately every three years at all CRMS sites. This dataset consists of a matrix of five land-water products (2005, 2008, 2012, YYYY and 2018).  The resulting matrix has 32 possible classes defined by the combination of land and water categories on those five dates.

Tags: alteration-of-wetland-habitats, cartography, coastal, coastal-louisiana, crms, doqq, emergent-wetland, forested-wetland, geographic-information-system, imagerybasemapsearthcover, land-water, louisiana, mapping, marsh, protection, restoration, scrub-shrub-wetland, state-of-louisiana, usgs-611f1330d34e40dd9c01d1bb, wetland, wetland-ecosystems, wetland-restoration
Organization: Department of the Interior
United States Register of Introduced and Invasive Species (US-RIIS) (ver. 2.0, November 2022)

Introduced (non-native) species that become established may eventually become invasive, so tracking all introduced species provides a baseline for effective modeling of species trends and interactions, geospatially and temporally. The United States Register of Introduced and Invasive Species (US-RIIS) (ver. 2.0, 2022, https://doi.org/10.5066/P9KFFTOD), as of 2022-10-23, is comprised of three lists, for the localities of Alaska (AK, with 545 records), Hawaii (HI, with 5,628 records), and the conterminous (or lower 48) United States (L48, with 8,527 records). Each includes introduced (non-native), established (reproducing) taxa that: are, or may become, invasive (harmful) in the locality; are not known to be harmful there; and/or have been used for biological control in the locality. To be included in the US-RIIS, a taxon must be non-native everywhere in the locality and established (reproducing) anywhere in the locality. Native pest species are not included. Each record has information on taxonomy, a vernacular name, establishment means (introduced unintentionally, or assisted colonization), degree of establishment (established, invasive, or widespread invasive), hybrid status, pathway of introduction (where available), habitat (where available), dates of introduction (where available), associated taxa (where applicable), native and introduced distributions (where available), and citations for the authoritative source(s) from which this information is drawn.

Tags: alaska, biosurveillance, conterminous-united-states, hawaii, introduced-species, invasive-species, inventory, non-native-species, nonindigenous-species, species, species-checklist, usgs-62d59ae5d34e87fffb2dda99
Organization: Department of the Interior
Kilauea 2018 lower East Rift Zone eruption - fissures 07 and 21 lava flow

The 2018 lower East Rift Zone eruption of Kilauea Volcano began in the late afternoon of 3 May, with fissure 1 opening and erupting lava onto Mohala Street in the Leilani Estates subdivision, part of the lower Puna District of the Island of Hawai'i. For the first week of the eruption, relatively viscous lava flowed only within a kilometer (0.6 miles) of the fissures within Leilani Estates, before activity shifted downrift (east-northeast) and out of the subdivision during mid-May. Around 18 May, activity along the lower East Rift Zone intensified, and fluid lava erupting at higher effusion rates from the downrift fissures reached the ocean within two days. Near the end of May, this more vigorous activity shifted back uprift into Leilani Estates, where fissure 8 reactivated with lava fountains feeding several 'a'a flows. The southernmost flow lobe developed into a well-defined lava channel and reached the ocean at Kapoho Bay - 11 kilometers (7 miles) away - on 3 June. Fissure 8 continued supplying this lava channel for more than two months, constructing an approximately 3.5-square-kilometer (1.4-square-mile) lava delta along the coastline. Over 4 and 5 August, activity at fissure 8 waned and flow in the lava channel came to a halt, only to be followed by weak activity within the vent in late August and early September. By then, the eruption had covered 35.5 square kilometers (13.7 square miles) of the lower Puna District with lava. In this report, the authors have sought to chronicle this sequence of events using geospatial data in the form of an Esri file geodatabase, Esri shapefiles, and Google Earth KMZs.

Tags: andesite, basalt, basaltic-andesite, east-rift-zone, fissures-07-and-21-flow, fissures-07-and-21-lava-flow, fissures-7-and-21-flow, fissures-7-and-21-lava-flow, fissures07and21flow, geology, green-lake, hawaii, holocene, individual-flow, individual-lava-flow, individualflows, island-of-hawaii, kapoho-bay, kapoho-oe-n-quadrangle, kapoho-quadrangle, kilauea, lava, lava-flow, leilani-estates, lower-east-rift-zone, map, pahoa-north-quadrangle, pahoa-south-quadrangle, puna-district, quaternary, shield-volcano, state-of-hawaii, tholeiitic-basalt, united-states-of-america, usgs-5ebb4f3f82ce25b5136182f9, vacationland-hawaii, volcano, waiopae
Organization: Department of the Interior