AndreaBozzo/ceres-open-data-index huggingface dataset:
Arsenic Concentrations in Drinking Water from Community Water Systems and Associations with Bladder, Colorectal, and Kidney Cancers, Accounting for Population Served

This is a linked dataset between drinking water data and cancer data.

Drinking Water Data: County-level concentrations of arsenic from CWSs between 2000 and 2010 were collected from the Center for Disease Control and Prevention’s (CDC) National Environmental Public Health Tracking Network (NEPHTN) (Centers for Disease Control and Prevention, 2018a). Annual mean drinking water arsenic concentrations from 2000 to 2010 were available for a total of 87,662 samples from 75,453 CWS from 26 states, representing 1,425 counties. For samples identified as non-detects, the most frequently reported values were 0.5 ppb and 1 ppb, with a range of 0 ppb to 10 ppb. For non-detect samples reported as zero, the value was substituted with a constant of 0.25 ppb (Almberg et al., 2017; Bulka et al., 2016). Of the samples that were reported as non-detects, 10.87% were reported as zeros. 

Cancer Data: County-level cancer counts and incidence rates for bladder, colorectal, and kidney cancers were acquired from the National Cancer Institute (NCI) and CDC’s State Cancer Profiles for 2011 through 2015 for adults (age ≥ 50) to match the counties with exposure data (National Cancer Institute and Centers for Disease Control and Prevention, 2018a). We utilized the time period 2011-2015 to provide a lag following the exposure period of 2000-2010. The State Cancer Profiles provide age-adjusted county-level cancer incidence, prevalence, mortality rates and average annual counts for 20 different types of cancers and select demographics (National Cancer Institute and Centers for Disease Control and Prevention, 2018b). Counties where there were less than 16 reported cases in a specific county, sex, and/or race category were suppressed to ensure confidentiality and stability of rate estimates (National Cancer Institute and Centers for Disease Control and Prevention, 2018a). 

This dataset is associated with the following publication:
Krajewski, A., M. Jimenez, K. Rappazzo, D. Lobdell, and J. Jagai. Aggregated Cumulative County Arsenic in Drinking Water and Associations with Bladder, Colorectal, and Kidney Cancers, Accounting for Population Served.   Journal of Exposure Science and Environmental Epidemiology. Nature Publishing Group, London,  UK, 31(6): 979-989, (2021).

Tags: arsenic, cancer, disinfection-byproducts-dbps, water-contaminants
Organization: U.S. Environmental Protection Agency
Base Cation Weathering Dataset_Whitfield et al 2018_SHC 4.61.4

This dataset supports the publication Whitfield et al. (2018) (https://doi.org/10.1007/s11270-018-3691-7). The dataset is a compilation of the estimated base cation weathering rates (BCw) for 44 sites in Pennsylvania under a variety of assumptions to explore key sources of uncertainty in estimates of BCw. BCw is a key variable in the estimates of thresholds (termed "critical loads") of acidification of terrestrial and aquatic ecosystems from atmospheric deposition of NOx and SOx. 

This dataset is associated with the following publication:
Whitfield, C., J. Phelan, J. Buckley, C. Clark, S. Guthrie, and J. Lynch. Estimating Base Cation Weathering Rates in the USA: Challenges of Uncertain Soil Mineralogy and Specific Surface Area with Applications of the PROFILE Model.   WATER, AIR, & SOIL POLLUTION. Springer, New York, NY, USA, 229(61): 1-15, (2018).

Tags: acidification, air-quality, critical-loads, ecological-risk, naaqs, nitrogen-deposition, secondary-standard, sulfur-deposition
Organization: U.S. Environmental Protection Agency
Beasley_Impacts of a perinatal exposure to manganese coupled with maternal stress in rats:  Maternal somatic measures and the postnatal growth and development of rat offspring_data_V1

Data set for the neurodevelopmental and somatic impacts of a perinatal exposure to stress coupled with Mn exposure on dams and their offspring. 

This dataset is associated with the following publication:
Beasley, T., K. McDaniel, W. Oshiro, V. Moser, D. MacMillan, and D. Herr. Impacts of a perinatal exposure to manganese coupled with maternal stress in rats:  Maternal somatic measures and the postnatal growth and development of rat offspring.   NEUROTOXICOLOGY AND TERATOLOGY. Elsevier Science Ltd, New York, NY, USA, 90(107061): 1, (2022).

Tags: developmental-neurotoxicity, manganese, perinatal-stress
Organization: U.S. Environmental Protection Agency
Ex-R Study Urine Data

Emory University (analyzed the urine samples for pyrethroid metabolites). This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: Contact Researcher. Format: Pyrethroid metabolite concentration data for 50 adults over six-weeks. 

This dataset is associated with the following publication:
Morgan , M., J. Sobus , D.B. Barr, C. Croghan , F. Chen , R. Walker, L. Alston, E. Andersen, and M. Clifton. Temporal variability of pyrethroid metabolite levels in bedtime, morning, and 24-hr urine samples for 50 adults in North Carolina.   ENVIRONMENT INTERNATIONAL. Elsevier Science Ltd, New York, NY, USA, 144: 81-91, (2015).

Tags: adults, biomonitoring, homes, pyrethroids, urine, variability
Organization: U.S. Environmental Protection Agency
Identifying chemicals and mixtures of potential biological concern detected in passive samplers from Great Lakes tributaries using high-throughput data and biological pathways

Water-borne contaminants were monitored in 69 tributaries of the Laurentian Great Lakes in 2010 and 2014 using semipermeable membrane devices (SPMDs), and polar organic chemical integrative samplers (POCIS).  Analyses included 185 chemicals (143 detected) including PAHs, legacy and current-use pesticides, fire retardants, pharmaceuticals, fragrances, and others.  Hazard quotients were calculated by dividing detected concentrations by biological effect concentrations reported in the ECOTOX Knowledgebase (Toxicity quotients, TQs) or ToxCast database (Exposure Activity Ratios, EARs). 

This dataset is associated with the following publication:
Alvarez, D., S. Corsi, L. De Cicco, D. Villeneuve, and A. Baldwin. Identifying chemicals and mixtures of potential biological concern detected in passive samplers from Great Lakes tributaries using high-throughput data and biological pathways.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA,   

Tags: adverse-outcome-pathway, aquatic-ecosystems, ecotoxicology, endocrine-disruption, great-lakes-restoration-initiative, passive-sampling, screening-and-prioritization
Organization: U.S. Environmental Protection Agency
Summary dataset for biomarkers, PCB congeners, and microRNAs measured in serum and associations of these data for the Anniston Community Health Survey I (ACHS-I).

These data are summaries of pro-inflammatory cytokine and insulin resistance serum biomarkers; necrotic liver disease defined by serum keratin 18 (K18) biomarkers. Associations were determined between exposure biomarkers (thirty-five ortho-substituted PCB congeners) and disease biomarkers (miRs); and Ingenuity Pathway Analysis was performed. Note to protect individual molecular information, only summaries of the data are presented. 

This dataset is associated with the following publication:
Cave, M., C. Pinkston, S. Rai, B. Wahlang, M. Pavuk, K. Head, G. Carswell, G. Nelson, C. Klinge, D. Bell, L. Birnbaum, and B. Chorley. Circulating MicroRNAs, Polychlorinated Biphenyls, and Environmental Liver Disease in the Anniston Community Health Survey.   ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, USA, 130(1): 017003, (2022).

Tags: biomarkers-of-effect, fatty-liver-disease, human-exposure, micrornas, polychlorinated-biphenyls-pcbs, serum
Organization: U.S. Environmental Protection Agency
Copyright images from Digital Globe WorldView satellite

Copyright images from Digital Globe WorldView satellite. This dataset is not publicly accessible because: Copyright images from Digital Globe WorldView satellite. It can be accessed through the following means: Copyright images from Digital Globe WorldView satellite. Format: Copyright images from Digital Globe WorldView satellite. 

This dataset is associated with the following publication:
Aminul Islam, K., V. Hill, B. Schaeffer, R. Zimmerman, and J. Li. Semi-supervised Adversarial Domain Adaptation for Seagrass Detection Using Multispectral Images in Coastal Areas.   Data Science and Engineering. Springer Nature Group, New York, NY,  5: 111–125, (2020).

Tags: estuary, remote-sensing, satellite, seagrass, water-quality
Organization: U.S. Environmental Protection Agency
USGS Feral Swine Dataset

The dataset contains quantitative polymerase chain reaction data for microbial source tracking markers screened on water samples collected from streams and rivers within and bounding Congaree National Park from samples collected throughout the year from December 2017 through June 2019. The number of samples collected per event ranged from 4-16 over the span of 11 sample events. This dataset is not publicly accessible because: Data belongs to USGS. It can be accessed through the following means: Anna McKee, amckee@usgs.gov. Format: Data is contained in a csv file with accompanying metadate xml file. 

This dataset is associated with the following publication:
McKee, A.M., P.M. Bradley, D. Shelley, S. McCarthy, and M. Molina. Feral swine as sources of fecal contamination in recreational waters.   Scientific Reports. Nature Publishing Group, London,  UK, 11: 4212, (2021).

Tags: beach-action-value, e-coli, fib, microbial-source-tracking, national-park
Organization: U.S. Environmental Protection Agency
Biological Measurements for Dosed Model Organism

Serum PFAS concentrations, pup weights, liver histopathology measurements, lipid panels, fasting insulin measurements. This dataset is not publicly accessible because: Data is the property of NIH. It can be accessed through the following means: Contact Suzanne Fenton for data (suzane.fenton@nih.gov). Format: Data stored in excel database format. 

This dataset is associated with the following publication:
Cope, H.A., B.E. Blake, C. Love, J. McCord, S.A. Elmore, J.B. Harvey, V.A. Chappell, and S.E. Fenton. Latent, sex-specific metabolic health effects in CD-1 mouse offspring exposed to PFOA or HFPO-DA (GenX) during gestation.   Emerging Contaminants. Elsevier B.V., Amsterdam,  NETHERLANDS, 7: 219-235, (2021).

Tags: hfpo-da, metabolism, pfas, pfoa, sex-specific-effects
Organization: U.S. Environmental Protection Agency
Lake Erie HABs Grab research

The dataset contains the raw data used for the correlation analyses. 

This dataset is associated with the following publications:
Schaeffer, B., J. SantoDomingo, and B. Kreakie. SSWR 4.3 Tools for HABs Risk Characterization and Assessment​ FY20 Report. U.S. Environmental Protection Agency, Washington, DC, USA.
Chaffin, J., J. Bratton, E. Verhamme, H. Bair, A. Beecher, C. Binding, J. Birbeck, T. Bridgeman, X. Chang, J. Crossman, W. Currie, T. Davis, G. Dick, K. Drouillard, R. Errera, T. Frenken, H. MacIsaac, A. McClure, R.M. McKay, L. Reitz, J. SantoDomingo, K. Stanislaawczyk, R. Stumpf, Z. Swan, B. Synder, J. Westrick, P. Xue, C. Yancey, A. Zastepa, and X. Zhou. The Lake Erie HABs Grab: A binational collaboration to characterize the western basin cyanobacterial harmful algal blooms at an unprecedented high-resolution spatial scale.   Harmful Algae. Elsevier B.V., Amsterdam,  NETHERLANDS, 108: 102080, (2021).

Tags: cyanobacteria, cyanohabs, metagenomics
Organization: U.S. Environmental Protection Agency
Conley_2021_NBP2_Dev_tox_Dataset_2022-1-10.xlsx

Dataset contains summary data (mean +/- error) for all endpoints measured in published studies. 

This dataset is associated with the following publication:
Conley, J., C. Lambright, N. Evans, E. Medlock Kakaley, D. Jenkins-Hill, J. McCord, M. Strynar, L. Wehmas, S. Hester, D. Macmillan, and L. Gray. Developmental toxicity of Nafion byproduct 2 (NBP2) in the Sprague-Dawley rat with comparisons to hexafluoropropylene oxide-dimer acid (HFPO-DA or GenX) and perfluorooctane sulfonate (PFOS).   ENVIRONMENT INTERNATIONAL. Elsevier B.V., Amsterdam,  NETHERLANDS, 160(107056): 1, (2022).

Tags: adverse-outcome-pathways-aops, childrens-environmental-health, decreased-birth-weight, drinking-water-contaminants, health-effects, in-vivo, pfas, thyroid-disrupting-agent
Organization: U.S. Environmental Protection Agency
Data for Investigating Exposure to Agrochemical Mixtures in Amphibians

GC/MS data resulting from the metabolomic analysis of amphibian livers following exposure to common agrochemicals (fertilizer and pesticides) and their mixtures. 

This dataset is associated with the following publication:
Van Meter, R.J., D. Glinski, T. Purucker, and M. Henderson. Induced Hepatic Glutathione and Metabolomic Alterations Following Mixed Pesticide and Fertilizer Exposures in Juvenile Leopard Frogs (Lithobates sphenocephala).   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 41(1): 122-133, (2022).

Tags: agrochemicals, amphibians, metabolomics, pesticides
Organization: U.S. Environmental Protection Agency
Air Pollution and Health in the Jackson Heart Study: a Cohort of African Americans in Jackson, Mississippi

Data include individual-level health data, including results from cardiovascular tests and medical history. This is linked to air quality data at participants' residence. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: Data may be requested through the Jackson Heart Study. Format: Data include individual-level health data, including results from cardiovascular tests and medical history. This is linked to air quality data at participants' residence. Since these data contain PII, they cannot be released to ScienceHub. 

This dataset is associated with the following publications:
Weaver, A., A. Bidulescu, G. Wellenius, D. Hickson, M. Sims, A. Vaidyanathan, W. Wu, A. Correa, and Y. Wang. Associations between Air Pollution Indicators and Prevalent and Incident Diabetes among African American Participants in the Jackson Heart Study.   Environmental Epidemiology. Wolters Kluwer, Alphen aan den Rijn,  NETHERLANDS, 5(3): e140, (2021).
Weaver, A., Y. Wang, G. Wellenius, A. Bidulescu, M. Sims, A. Vaidyanathan, D. Hickson, D. Shimbo, M. Abdalla, K. Diaz, and S. Seals. Long-Term Air Pollution and Blood Pressure in an African American Cohort: The Jackson Heart Study.   American Journal of Preventive Medicine. Elsevier B.V., Amsterdam,  NETHERLANDS, 60(3): 397-405, (2021).

Tags: african-american, air-pollution, cardiovascular-disease, diabetes, hypertension
Organization: U.S. Environmental Protection Agency
Neighborhood sociodemographic effects on the associations between long-term PM2.5 exposure and cardiovascular outcomes and diabetes

The dataset contains information on medical history, residential information and demographic information on CATHGEN participants as well as modeled PM2.5 values at participants' residence. This dataset is not publicly accessible because: The data are human subjects data containing potential identifiable information (PII) and therefore access is restricted to the study investigators. Because base data are owned by other entities, these data need to be requested directly from Duke University. It can be accessed through the following means: These data can accessed upon request to the CATHGEN steering committee at Duke University. Format: Data are stored as SAS files on secure EPA drives. 

This dataset is associated with the following publication:
Weaver, A., L. McGuinn, L. Neas, J. Mirowsky, R. Devlin, R. Dhingra, C. Ward-Caviness, W. Cascio, W. Kraus, E. Hauser, Q. Di, J. Schwartz, and D. Diaz-Sanchez. Neighborhood sociodemographic effects on the associations between long-term PM2.5 exposure and cardiovascular outcomes and diabetes.   Journal of Exposure Science and Environmental Epidemiology. Nature Publishing Group, London,  UK, 3(1): e038, (2019).

Tags: air-pollution, cardiovascular-disease, environmental-justice, hypertension
Organization: U.S. Environmental Protection Agency
Examining PM2.5 concentrations and exposure using multiple models: Dataset

The data files correspond to the figures in the manuscript and can be read into the open-source R software using standard commands (e.g., data <- readRDS('filename.rds') ). Citation information for this dataset can be found in the EDG's Metadata Reference Information section and Data.gov's References section.

Tags: air-quality-modeling, ensemble-modeling, exposure-inequality, pm2-5
Organization: U.S. Environmental Protection Agency
burnpit dataset_gilmour

excell spreadsheet. 

This dataset is associated with the following publication:
Kim, Y.H., S. Warren, I. Kooter, W. Williams, I. George, S. Vance, M. Hays, M. Higuchi, S. Gavett, D. Demarini, I. Jaspers, and M. Gilmour. Chemistry, lung toxicity and mutagenicity of burn pit smoke-related particulate matter.   Particle and Fibre Toxicology. BioMed Central Ltd, London,  UK, 18(1): 45, (2021).

Tags: toxicity-burnpit-mice-combustion-air-pollution-mutagenicity
Organization: U.S. Environmental Protection Agency
Potential for electric vehicle adoption to mitigate extreme air quality events in China study dataset (please contact Dr. Jordan Schnell (jordan.schnell@noaa.gov) to obtain a copy of the data)

simulation results. This dataset is not publicly accessible because: I don't own the data. It can be accessed through the following means: Please contact Dr. Jordan Schnell (jordan.schnell@noaa.gov) to obtain a copy of the data. Format: N/A. 

This dataset is associated with the following publication:
Schnell, J., D. Peters, D. Wong, X. Lu, H. Gao, H. Zhang, P. Kinney, and D. Horton. Potential for Electric Vehicle Adoption to Mitigate Extreme Air Quality Events in China.   Earth’s Future. John Wiley & Sons, Inc., Hoboken, NJ, USA, 9(2): e2020EF001788, (2021).

Tags: air-pollution, electric-vehicles, ozone, pm25
Organization: U.S. Environmental Protection Agency
Bisphenol A and triclosan levels in individual food items

Bisphenol A and triclosan levels in individual food items consumed by 50 adults over six-weeks. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: Downloading a copy of this future manuscript from the Internet as the original data values are provided. Format: Exposure of 50 adults to bisphenol A and triclosan in individual food items over six-weeks. 

This dataset is associated with the following publication:
Morgan, M., and M. Clifton. Dietary Exposures and Intake Doses to Bisphenol A and Triclosan in 188 Duplicate-Single Solid Food Items Consumed by US Adults.   International Journal of Environmental Research and Public Health. Molecular Diversity Preservation International, Basel,  SWITZERLAND, 18(8): 4387, (2021).

Tags: adults, bisphenol-a, consumer-products, diet, exposure, triclosan
Organization: U.S. Environmental Protection Agency
Puerto Rico 2018 Tapwater Pilot Study Endocrine Bioassay Screening

Tapwater samples from residential and commercial sites were sampled in Puerto Rico in August 2018 in a pilot study. All samples were screened using estrogen, androgen and glucocorticoid in vitro bioassay screening tools to test for biological activity. 

This dataset is associated with the following publication:
Bradley, P., I. Padilla, K. Romanok, K. Smalling, M. Focazio, S. Breitmeyer, M. Cardon, J. Conley, N. Evans, C. Givens, J. Gray, L. Gray, P. Hartig, C. Higgins, M. Hladik, L. Iwanowicz, R. Lane, K. Loftin, R.B. McCleskey, C. McDonough, E. Medlock Kakaley, S. Meppelink, and C. Weis. Pilot-scale expanded assessment of inorganic and organic tapwater exposures and predicted effects in Puerto Rico, USA.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 788(147721): 1, (2021).

Tags: disinfection-byproducts, in-vitro-bioassays, inorganics, organics, tapwater
Organization: U.S. Environmental Protection Agency
Shell Day Data

“Shell Day” was a single-day regional water monitoring event coordinating simultaneous coastal carbonate chemistry observations by 59 community science programs and 7 research institutions in the northeastern United States, in which 410 total alkalinity (TA) samples from 86 stations were collected. Samples were collected at low, mid, and high tide by community science volunteers and brought to partnering research laboratories for sample processing. Minimum requirements for participation in Shell Day were the capacity to measure water temperature and salinity – some organizations used thermometers and refractometers, and others used multiparameter datasondes or handheld units. An analysis and interpretation of the temperature, salinity, and total alkalinity data can be found at Rheuban et al 2020 Environ. Res. Lett. in press https://doi.org/10.1088/1748-9326/abcb39. Included in this dataset are measurements of water temperature, salinity, total alkalinity, pH, dissolved oxygen concentration, dissolved oxygen saturation, total depth, secchi disk depth, chlorophyll, turbidity, as well as air temperature and barometric pressure, and qualitative assessments of wind, weather, and cloud cover. 

This dataset is associated with the following publication:
Rheuban, J.E., P. Gassett, D.C. Mccorkle, C. Hunt, M. Liebman, C. Bastidas, K. O’Brien-Clayton, A. Pimenta, E. Silva, P. Vlahos, R. Woosley , J. Ries, C. Liberti, J. Grear, J. Salisbury, D. Brady, K. Guay, M. LaVigne, A. Strong, E. Stancioff, and E. Turner. Synoptic Assessment of Coastal Total Alkalinity through Community Science.   Environmental Research Letters. IOP Publishing LIMITED, Bristol,  UK, 16: 024009, (2021).

Tags: chlorophyll, coastal-acidification, dissolved-oxygen-concentration, dissolved-oxygen-saturation, ocean-acidification, ph, salinity, secchi-disk-depth, total-alkalinity, total-depth, turbidity, water-quality, water-temperature
Organization: U.S. Environmental Protection Agency