AndreaBozzo/ceres-open-data-index huggingface dataset:
RECAP dataset: Subject, exposure, and health endpoint (blood, lipids, cardiac, and lung) data

This dataset contains deidentified subject level data from the study titled: Responses to Exposure to Low Levels of Concentrated Ambient Particles in Healthy Young Adults (RECAP). Subject, exposure, and health endpoint data are included in the dataset. Health endpoint data includes inflammatory, heart rate variability and cardiac repolarization, lung function, blood chemistry, and lipids measures. 

This dataset is associated with the following publication:
Wyatt, L., R. Devlin, A. Rappold, and M. Case. Low levels of fine particulate matter increase vascular damage and reduce pulmonary function in young healthy adults.   Particle and Fibre Toxicology. BioMed Central Ltd, London,  UK, 17(1): 58, (2020).

Tags: controlled-human-exposure, particulate-matter-air-pollution
Organization: U.S. Environmental Protection Agency
Data set for co-contaminant paper

The objective of this research was to evaluate the performance of five arsenic adsorptive media technology of full-scale drinking water treatment systems in the USEPA Arsenic Demonstration Program (ADP) that were found to simultaneously remove other co-occurring inorganic contaminants. The datasets presented here are the figures included in the referenced journal article. 

This dataset is associated with the following publication:
Sorg, T., A. Chen, L. Wang, and D. Lytle. Removing co-occurring contaminants of arsenic and vanadium with full-scale arsenic adsorptive media systems.   JOURNAL OF WATER SUPPLY: RESEARCH AND TECHNOLOGY - AQUA. IWA Publishing, London,  UK, ( ): 2021148, (2021).

Tags: arsenic, contaminants-in-water-systems, drinking-water
Organization: U.S. Environmental Protection Agency
High-Throughput Transcriptomics Platform for Screening Environmental Chemicals

We screened 44 chemicals in MCF7 cells in concentration response and generated HTTr data using the TempO-Seq hWTv1 assay. First, we provide an outline of the quality of the HTTr data based on a set of QC metrics we developed for this platform. Second, we evaluate the reproducibility and mechanistic accuracy of the HTTr platform using inter-plate analysis of reference samples and comparison of reference chemical treatment effects with CMAP signatures, respectively. Third, we summarize the concentration-dependent HTTr responses for all 44 chemicals to stratify them in terms of their overall effect on the transcriptome. Fourth, we present a new gene signature based concentration-response analysis that provides potency estimates for perturbation of cellular biology (ie, BPACs). 

This dataset is associated with the following publication:
Harrill, J., L. Everett, D. Haggard, T. Sheffield, J. Bundy, C. Willis, R. Thomas, I. Shah, and R. Judson. High-Throughput Transcriptomics Platform for Screening Environmental Chemicals.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,  181(1): 68-89, (2021).

Tags: computational-toxicology, high-throughput-screening, tempo-seq, transcriptomics
Organization: U.S. Environmental Protection Agency
Evaluation of SWAT reservoir, ponds, and wetlands tools in water and sediment simulation in the Rock River watershed

The dataset supported findings in the study:
"Evaluation of SWAT reservoir, ponds, and wetlands tools in water and sediment simulation in the Rock River watershed".
Results of this study demonstrate the impact of impoundments in SWAT modeling.The dataset includes sources of the SWAT input data. 

This dataset is associated with the following publication:
Jalowska, A., and Y. Yuan. Evaluation of SWAT Impoundment Modeling Methods in Water and Sediment Simulations.   JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION. American Water Resources Association, Middleburg, VA, USA, 55(1): 209-227, (2019).

Tags: arcswat, cmaq, epic, gulf-of-mexico, hawqs, hypoxia, impoundments, integrated-modeling, mississippi-river-basin, model-calibration, model-parameterization, nitrogen-deposition, nitrogen-loads, ponds, reservoirs, sediment-retention, streamflow, swat, wetlands, wrf
Organization: U.S. Environmental Protection Agency
H12019: NOS Hydrographic Survey , Tampa Bay, Florida, 2011-05-27

The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe navigation and to provide background data for engineers, scientific, and other commercial and industrial activities. Hydrographic survey data primarily consist of water depths, but may also include features (e.g. rocks, wrecks), navigation aids, shoreline identification, and bottom type information.
							NOAA is responsible for archiving and distributing the source data as described in this metadata record.

Tags: acoustic sounders, bathymetry, bathymetry/seafloor topography, continent, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth remote sensing instruments, earth science, entrance to tampa bay, florida, global positioning system/inertial measurement unit, gps, gps receivers, gps/imu, hydrographic surveys for selected locations within the united states (hydro_bathy_2006), in situ ocean-based platforms, in situ/laboratory instruments, marine sediments, mbes, msbs, multibeam mapping system, multibeam swath bathymetry system, national centers for environmental information, national geophysical data center, nesdis, noaa, north america, ocean, oceans, passive remote sensing, positioning/navigation, profilers/sounders, seafloor topography, sediment composition, ships, sonar, sound navigation and ranging, tampa bay, u.s. department of commerce, united states of america, water depth
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
H12097: NOS Hydrographic Survey , Georgia Safety Fairways, Georgia, 2010-06-13

The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe navigation and to provide background data for engineers, scientific, and other commercial and industrial activities. Hydrographic survey data primarily consist of water depths, but may also include features (e.g. rocks, wrecks), navigation aids, shoreline identification, and bottom type information.
							NOAA is responsible for archiving and distributing the source data as described in this metadata record.

Tags: acoustic sounders, atlantic ocean, bathymetry, bathymetry/seafloor topography, continent, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth remote sensing instruments, earth science, georgia, global positioning system/inertial measurement unit, gps, gps receivers, gps/imu, hydrographic surveys for selected locations within the united states (hydro_bathy_2006), in situ ocean-based platforms, in situ/laboratory instruments, marine sediments, mbes, msbs, multibeam mapping system, multibeam swath bathymetry system, national centers for environmental information, national geophysical data center, nesdis, noaa, north america, northern st. mary safety fairway, ocean, oceans, passive remote sensing, positioning/navigation, profilers/sounders, seafloor topography, sediment composition, ships, sonar, sound navigation and ranging, u.s. department of commerce, united states of america, water depth
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EM122 Water Column Sonar Data Collected During RR1719

Cruise RR1719 on RV Roger Revelle (EM122)

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, north pacific ocean, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
H12095: NOS Hydrographic Survey , Georgia Safety Fairways, Georgia, 2010-06-09

The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe navigation and to provide background data for engineers, scientific, and other commercial and industrial activities. Hydrographic survey data primarily consist of water depths, but may also include features (e.g. rocks, wrecks), navigation aids, shoreline identification, and bottom type information.
							NOAA is responsible for archiving and distributing the source data as described in this metadata record.

Tags: acoustic sounders, atlantic ocean, bathymetry, bathymetry/seafloor topography, continent, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth remote sensing instruments, earth science, georgia, global positioning system/inertial measurement unit, gps, gps receivers, gps/imu, hydrographic surveys for selected locations within the united states (hydro_bathy_2006), in situ ocean-based platforms, in situ/laboratory instruments, marine sediments, mbes, msbs, multibeam mapping system, multibeam swath bathymetry system, national centers for environmental information, national geophysical data center, nesdis, noaa, north america, northern brunswick safety fairway, ocean, oceans, passive remote sensing, positioning/navigation, profilers/sounders, seafloor topography, sediment composition, ships, sonar, sound navigation and ranging, u.s. department of commerce, united states of america, water depth
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
H12096: NOS Hydrographic Survey , Georgia Safety Fairways, Georgia, 2010-06-10

The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe navigation and to provide background data for engineers, scientific, and other commercial and industrial activities. Hydrographic survey data primarily consist of water depths, but may also include features (e.g. rocks, wrecks), navigation aids, shoreline identification, and bottom type information.
							NOAA is responsible for archiving and distributing the source data as described in this metadata record.

Tags: acoustic sounders, atlantic ocean, bathymetry, bathymetry/seafloor topography, continent, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth remote sensing instruments, earth science, georgia, global positioning system/inertial measurement unit, gps, gps receivers, gps/imu, hydrographic surveys for selected locations within the united states (hydro_bathy_2006), in situ ocean-based platforms, in situ/laboratory instruments, marine sediments, mbes, msbs, multibeam mapping system, multibeam swath bathymetry system, national centers for environmental information, national geophysical data center, nesdis, noaa, north america, ocean, oceans, passive remote sensing, positioning/navigation, profilers/sounders, seafloor topography, sediment composition, ships, sonar, sound navigation and ranging, southern brunswick safety fairway, u.s. department of commerce, united states of america, water depth
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Phi6 Manuscript_Antimicrobial Coatings_Complete Data

Effectiveness (efficacy) data for antimicrobial coatings against phi6 bacteriaphage. 

This dataset is associated with the following publication:
Calfee, M., S. Ryan, A. Abdel-Hady, M. Monge, D. Aslett, A. Touati, M. Stewart, S. Tomasino, S. Lawrence, K. Willis, and R. Pines. Antimicrobial Surface Coatings Antiviral Efficacy Against the Enveloped Bacteriophage ?6.   JOURNAL OF APPLIED MICROBIOLOGY. Blackwell Publishing, Malden, MA, USA,  12, (2021).

Tags: antimicrobials
Organization: U.S. Environmental Protection Agency
H12099: NOS Hydrographic Survey , Georgia Safety Fairways, Georgia, 2009-12-13

The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe navigation and to provide background data for engineers, scientific, and other commercial and industrial activities. Hydrographic survey data primarily consist of water depths, but may also include features (e.g. rocks, wrecks), navigation aids, shoreline identification, and bottom type information.
							NOAA is responsible for archiving and distributing the source data as described in this metadata record.

Tags: acoustic sounders, atlantic ocean, bathymetry, bathymetry/seafloor topography, continent, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth remote sensing instruments, earth science, georgia, global positioning system/inertial measurement unit, gps, gps receivers, gps/imu, hydrographic surveys for selected locations within the united states (hydro_bathy_2006), in situ ocean-based platforms, in situ/laboratory instruments, marine sediments, mbes, msbs, multibeam mapping system, multibeam swath bathymetry system, national centers for environmental information, national geophysical data center, nesdis, noaa, north america, ocean, oceans, passive remote sensing, positioning/navigation, profilers/sounders, seafloor topography, sediment composition, ships, sonar, sound navigation and ranging, southern saint marys safety fairway, u.s. department of commerce, united states of america, water depth
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
H12017: NOS Hydrographic Survey , Tampa Bay, Florida, 2011-01-04

The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe navigation and to provide background data for engineers, scientific, and other commercial and industrial activities. Hydrographic survey data primarily consist of water depths, but may also include features (e.g. rocks, wrecks), navigation aids, shoreline identification, and bottom type information.
							NOAA is responsible for archiving and distributing the source data as described in this metadata record.

Tags: acoustic sounders, bathymetry, bathymetry/seafloor topography, central tampa bay, continent, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth remote sensing instruments, earth science, florida, global positioning system/inertial measurement unit, gps, gps receivers, gps/imu, hydrographic surveys for selected locations within the united states (hydro_bathy_2006), in situ ocean-based platforms, in situ/laboratory instruments, marine sediments, mbes, msbs, multibeam mapping system, multibeam swath bathymetry system, national centers for environmental information, national geophysical data center, nesdis, noaa, north america, ocean, oceans, passive remote sensing, positioning/navigation, profilers/sounders, seafloor topography, sediment composition, ships, sonar, sound navigation and ranging, tampa bay, u.s. department of commerce, united states of america, water depth
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Reson7125 Water Column Sonar Data Collected During PTS01

The cruise investigated how complex fine-scale structure and processes in coastal waters dominated by pulsed-river plumes control the exposure, impacts, and ecosystem recovery from offshore spills like the Deepwater Horizon release of 2010. Data were collected along three transects in the northern Gulf of Mexico in water depths from 10 metres to 60 metres using the Reson 7125 multibeam sonar and a In Situ Ichtyoplankton Imaging System (ISIIS). Stations along the corridor completed CTD casts, trace metal testing, water chemistry, FlowCam analysis, radio-isotopes testing, and productivity experiments.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, gulf of mexico, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
H12018: NOS Hydrographic Survey , Tampa Bay, Florida, 2011-04-11

The National Oceanic and Atmospheric Administration (NOAA) has the statutory mandate to collect hydrographic data in support of nautical chart compilation for safe navigation and to provide background data for engineers, scientific, and other commercial and industrial activities. Hydrographic survey data primarily consist of water depths, but may also include features (e.g. rocks, wrecks), navigation aids, shoreline identification, and bottom type information.
							NOAA is responsible for archiving and distributing the source data as described in this metadata record.

Tags: acoustic sounders, bathymetry, bathymetry/seafloor topography, continent, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth remote sensing instruments, earth science, florida, global positioning system/inertial measurement unit, gps, gps receivers, gps/imu, hydrographic surveys for selected locations within the united states (hydro_bathy_2006), in situ ocean-based platforms, in situ/laboratory instruments, marine sediments, mbes, msbs, multibeam mapping system, multibeam swath bathymetry system, national centers for environmental information, national geophysical data center, nesdis, noaa, north america, ocean, oceans, passive remote sensing, port manatee to sunshine skyway bridge, positioning/navigation, profilers/sounders, seafloor topography, sediment composition, ships, sonar, sound navigation and ranging, tampa bay, u.s. department of commerce, united states of america, water depth
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Perinatal high-fat diet influences ozone-induced responses on pulmonary oxidant status and the molecular control of mitophagy in female rat offspring

The data belongs to Maastricht University. This dataset is not publicly accessible because: Data does not belong to EPA. It can be accessed through the following means: Please contact the corresponding author for data. Format: non-EPA data. 

This dataset is associated with the following publication:
Rouschop , S., S. Snow , U. Kodavanti, M. Drittij , L. Maas , A. Opperhuizen, F. van Schooten, A. Remels, and R. Godschalk. Perinatal High-Fat Diet Influences Ozone-Induced Responses on Pulmonary Oxidant Status and the Molecular Control of Mitophagy in Female Rat Offspring.   International Journal of Molecular Sciences. MDPI AG, Basel,  SWITZERLAND, 22(14): 7551, (2021).

Tags: high-fat-diet, mitochondria, obesity, oxidative-stress, ozone, perinatal, pulmonary-toxicity
Organization: U.S. Environmental Protection Agency
Soil microbial indicators of soil amendments

soil microbial populations and enzyme assays that show responses of the soil microbial community to soil amendments. This dataset is not publicly accessible because: Link to data is not available now. It can be accessed through the following means: USDA - ARS will have the link to the data at some point. Format: Likely to be an excel file and avialble as a public link in the future. 

This dataset is associated with the following publication:
Ducey, T.F., J.M. Novak, G.C. Sigua, J.A. Ippolito, H.C. Rushmiller, D.W. Watts, K.M. Trippe, K.A. Spokas, K.C. Stone, and M. Johnson. Microbial Response to Designer Biochar and Compost Treatments for Mining Impacted Soils.   Biochar Journal. Ithaka Institute for Carbon Intelligence, Arbaz,  SWITZERLAND, 3: 299-314, (2021).

Tags: biochar, plants, remediation, soil
Organization: U.S. Environmental Protection Agency
EM122 Water Column Sonar Data Collected During MGL1408

MGL1408 Atlantic Eastern North American Margin (ENAM) Community Seismic Experiment (MGL1408, EM122)

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, north atlantic ocean, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EK60 Water Column Sonar Data Collected During SE0413L2

Micronekton sampling gear Intercalibration Experiment Survey #1 (MIE-1) (SE0413L2, EK60). The goal of the cruise was to collect micronekton samples using three different type of midwater trawl: Cobb trawl, Isaacs Kidd Midwater Trawl (IKMT), and a Hokkaido University Frame Trawl (HUFT).  Trawls were conducted off the lee coast of the Island of Oahu, Hawaii, in approximately 1,000 m deep waters.  Acoustic backscatter was simultaneously monitored during trawls using an EK60 system operating at 38 and 120 kHz frequencies.  Trawls sampled the nighttime shallow scattering layer and daytime deep and shallow scattering layers.  It total, 18 Cobb, 19 IKMT, and 20 HUFT were completed.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, doc/noaa/nmfs, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, national marine fisheries service, nesdis, noaa, north pacific ocean, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Prioritization of chemicals for effects on steroidogenesis using an integrated statistical approach to high-throughput H295R data

HT-H295R data was downloaded using the ToxCast pipeline (tcpl) R package and is publicly available. Multi-concentration level 0 data from invitrodb (version 3.1) were downloaded and converted from g/ml into micromolar concentrations prior to calculation of mMds and data simulation (Supplemental Data 1). 

This dataset is associated with the following publication:
Haggard, D., W. Setzer, R. Judson, and K. Friedman. Development of a prioritization method for chemical-mediated effects on steroidogenesis using an integrated statistical analysis of high-throughput H295R data.   REGULATORY TOXICOLOGY AND PHARMACOLOGY. Elsevier Science Ltd, New York, NY, USA, 109: 104510, (2019).

Tags: chemical-prioritization, endocrine-disruption, high-throughput-screening, high-throughput-toxicology, steriodogenesis, toxcast
Organization: U.S. Environmental Protection Agency
CHEMICAL CHARACTERIZATION OF RECYCLED CONSUMER PRODUCTS USING SUSPECT SCREENING ANALYSIS

All data associated with Figures and Tables of manuscript "CHEMICAL CHARACTERIZATION OF RECYCLED CONSUMER PRODUCTS USING SUSPECT SCREENING ANALYSIS", Charles Lowe et al., Environmental Science and Technology, 2021.

Datasets are provided in a multisheet Excel file.  The first sheet in the file contains the Data Dictionary for all datasets. 

This dataset is associated with the following publication:
Lowe, C., K. Phillips, K. Favela, A. Yau, J. Wambaugh, J. Sobus, A. Williams, A. Jackson, and K. Isaacs. Chemical Characterization of Recycled Consumer Products Using Suspect Screening Analysis (Environmental Science and Technology).   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 55(16): 11375-11387, (2021).

Tags: consumer-exposure, consumer-products, expocast, human-exposure-modeling, non-targeted-analysis, recycling, suspect-screening
Organization: U.S. Environmental Protection Agency