AndreaBozzo/ceres-open-data-index huggingface dataset:
Water temperature trends

Water temperature trends. This dataset is not publicly accessible because: Data is the property of HydroShare. It can be accessed through the following means: https://www.hydroshare.org/. Format: CUASHI HydroShare. 

This dataset is associated with the following publication:
Kelleher, C., H. Golden, and S. Archfield. Monthly River Temperature Trends Across the US Confound Annual Changes.   Environmental Research Letters. IOP Publishing LIMITED, Bristol,  UK, 16(10): 104006, (2021).

Tags: climate-variations, mann-kendall, river-temperature, stream-temperature, trends, water-quality
Organization: U.S. Environmental Protection Agency
AHHS 2 Swiffer vs floor SciHUB 1-20-21

The tab name in the EXCEL file explains the results found on that sheet.  The first tab is the raw data for the EC analyses of the EC samples.  The second tab is the raw data showing the EC and vacuum dust analyses.  The third tab shows the data for Table 1.  The fourth tab shows the data for Table 2 and the last tab shows the data for Figure 1. 

This dataset is associated with the following publication:
Vesper, S., L. Wymer, D. Cox, G. Dewalt, E. Pinzer, W. Friedman, and P.J. Ashley. Comparison of ERMI results for dust collected from homes by an electrostatic cloth and by the standard vacuum method.   JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL HYGIENE. Taylor & Francis, Inc., Philadelphia, PA, USA, 18(9): 423-429, (2021).

Tags: dust, electrostatic-cloth, ermi, mold
Organization: U.S. Environmental Protection Agency
Genome-wide DNA methylation and controlled diesel exposure

This dataset contains genome-wide DNA methylation data from the Illumina EPIC array as well as information on the exposure given (clean air, diesel, or ozone) at each time point. Demographic and anthropomorphic information on the participants in the study is also included within the dataset. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: This data can be accessed by contacting the data owners. Access to the data requires an approved Institutional Review Board application from an appropriate institution. Format: This dataset include blood biomarker measurements (DNA methylation; Ilumina EPIC Methylation array) along with demographic and anthropomorphic information on participants. In addition there is data on which controlled exposure was received (clean air or diesel or ozone) and at which time points. 

This dataset is associated with the following publications:
Cardenas, A., R. Fadadu, L. Van Der Laan, C. Ward-Caviness, L. Granger, D. Diaz-Sanchez, M. Bind, and R. Devlin. Controlled Human Exposures to Diesel Exhaust: A Human Epigenome-Wide Experiment of Target Bronchial Epithelial Cells.   Environmental Epigenetics. Oxford University Press, Cary, NC, USA, 7(1): dvab003, (2021).
Bind, M., D. Rubin, A. Cardenas, R. Dhingra, C. Ward-Caviness, Z. Liu, J. Mirowsky, J. Schwartz, B. Coull, D. Diazsanchez, and R. Devlin. HETEROGENEOUS OZONE EFFECTS ON DNA METHYLOME OF BRONCHIAL CELLS: OBSERVED IN A CROSSOVER STUDY.   Scientific Reports. Nature Publishing Group, London,  UK, 10(1): 15739, (2020).

Tags: diesel, dna-methylation, human-metabolome, ozone, pulmonary
Organization: U.S. Environmental Protection Agency
TIGER/Line Shapefile, 2019, Series Information for the Current Consolidated City State-based Shapefile

The TIGER/Line shapefiles and related database files (.dbf) are an extract of selected
                geographic and cartographic information from the U.S. Census Bureau's 
                Master Address File / Topologically Integrated Geographic Encoding and Referencing (MAF/TIGER)
                Database (MTDB). The MTDB represents a seamless national file with no overlaps or gaps between parts,
                however, each TIGER/Line shapefile is designed to stand alone as an independent data set, or they
                can be combined to cover the entire nation.
                
                A consolidated city is a unit of local government for which the functions of an incorporated place
                and its county or minor civil division (MCD) have merged. This action results in both the primary
                incorporated place and the county or MCD continuing to exist as legal entities, even though the
                county or MCD performs few or no governmental functions and has few or no elected officials. Where
                this occurs, and where one or more other incorporated places in the county or MCD continue to
                function as separate governments, even though they have been included in the consolidated government,
                the primary incorporated place is referred to as a consolidated city. The Census Bureau classifies
                the separately incorporated places within the consolidated city as place entities and creates a
                separate place (balance) record for the portion of the consolidated city not within any other place.
                
                The boundaries of the consolidated cities are those as of January 1, 2019, as reported through the
                Census Bureau's Boundary and Annexation Survey (BAS).

Tags: consolidated city, polygon, state or equivalent entity, u.s, united states
Organization: U.S. Census Bureau, Department of Commerce
Link to supplemental material including all the data needed to replicate the analysis.

This is a link to the supplemental material from the manuscript that includes all of the data and R code needed to replicate the analysis. 

This dataset is associated with the following publication:
Coffman, E., R. Burnett, and J. Sacks. Quantitative Characterization of Uncertainty in the Concentration Response Relationship between Long-Term PM2.5 Exposure and
Mortality at Low Concentrations.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 54(16): 10191-10200, (2020).

Tags: concentration-response, mortality, particulate-matter, uncertainty
Organization: U.S. Environmental Protection Agency
EK60 Water Column Sonar Data Collected During FK006C

Shakedown/ROV Dives (FK006C, EK60)

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, gulf of mexico, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EM710 Water Column Sonar Data Collected During SKQ201504T

Transit (SKQ201504T, EM710)

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, gulf of alaska, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
PFESABP2v01

Data for individual animals used to create the information demonstrated in Table 1 of the manuscript, including PFESA BP2 serum and liver concentrations and serum clinical chemistry values. 

This dataset is associated with the following publication:
Jenkins-Hill, D., M. Strynar, A. Lindstrom, A. Farthing, H. Huang, J. Schmid, J. Lang, and N. Chernoff. Toxicity of Balb-c mice exposed to recently identified 1,1,2,2-tetrafluoro-2-[1,1,1,2,3,3-hexafluoro-3-(1,1,2,2-tetrafluoroethoxy)propan-2-yl]oxyethane-1-sulfonic acid (PFESA-BP2).   TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 441(152529): 1, (2020).

Tags: in-vivo, pfas
Organization: U.S. Environmental Protection Agency
IN VITRO AND IN VIVO ANDROGEN RECEPTOR DATA SET FROM TOX SCI PAPER GRAY ET AL 2020

Data sets include
1.	 Excel file with Hershberger assay protocols and data and summaries of in vivo antiandrogen studies
2.	Figures of in vitro AR assay results from contract work and in house studies
3.	Excel file with in house in vitro AR antagonism data. 

This dataset is associated with the following publication:
Gray, L., J. Furr, C. Lambright, N. Evans, P. Hartig, M. Cardon, V. Wilson, A. Hotchkiss, and J. Conley. Quantification of uncertainties in extrapolating from in vitro androgen receptor (AR) antagonism to in vivo Hershberger Assay endpoints and adverse reproductive development in male rats.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,  176(2): 297-311, (2020).

Tags: androgen-receptor, antiandrogens, hershberger-assay, in-utero-effects-on-male-reproductive-development, in-vitro-in-vivo-extrapolation, quantitative-aop-for-androgen-receptor-antagonistsr
Organization: U.S. Environmental Protection Agency
CONUS_extent

The dataset provided here contains the added pixel quality assurance (QA) flags that help ensure validity of satellite-derived water quality estimates in freshwater lakes and reservoirs. This work builds upon a study by Urquhart et al. [1] where inland lake and waterbody satellite data was processed and flagged for California, Ohio, and Florida. Added pixel QA flags include land-adjacent pixels, unresolvable waterbody pixels, and snow/ice pixels. Any water pixel adjacent to land is flagged to caution potential for mixed land-water pixels and land adjacency effects. A weekly QA flag mask is provided for snow/ice presence over lakes. The unresolvable QA flag mask contains inland waterbodies smaller than 27 hectares and/or with less than three 300m resolvable satellite pixels.

An updated version of the Shuttle Radar Topography Mission (SRTM) Waterbody Data (SWBD) is provided to fix a land-waterbody mask error identified in Rhode Island and Massachusetts. The Research Environments MEaSUREs SRTM, used in the NASA data pre-processing, includes the Water Body Data Shapefiles (~30m) product. Version 3.0 of the SRTM contains the vectorized coastline masks used by National Geospatial-Intelligence Agency (NGA) in the editing, called the SRTM Waterbody Data, in shapefile and rasterized formats [4]. Version 4.0 of the SRTM presented here fixes the land-waterbody mask error identified in Rhode Island and Massachusetts. Version 4.0 of the SRTM has been adopted into the NASA pre-processing of the MERIS and OLCI satellite datafiles described above. 

This dataset is associated with the following publication:
Urquhart, E., and B. Schaeffer. Envisat MERIS and Sentinel-3 OLCI satellite lake biophysical water quality flag dataset for the contiguous United States.   Data in Brief. Elsevier B.V., Amsterdam,  NETHERLANDS, 28: 104826, (2020).

Tags: cyanobacteria, ecology, harmful-algal-bloom, lakes, remote-sensing, satellite, water-quality
Organization: U.S. Environmental Protection Agency
EM302 Water Column Sonar Data Collected During SKQ201913T

Sikuliaq Cruise SKQ201913T (EM302)

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, north pacific ocean, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EM710 Water Column Sonar Data Collected During FK007

Imaging the K-T Impact Structure-Campeche Escarpment (FK007, EM710)

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, gulf of mexico, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EM302 Water Column Sonar Data Collected During FA170009

Fugro Americas Transit (FA170009). EM302 Data collected during Fugro Americas Transit, data types .all bathy and backscatter and .wcd watercolumn. Data for Seabed 2030 project

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, north atlantic ocean, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Characterization of Novel Human Immortalized Thyroid Follicular Epithelial Cell Lines

Biomarker Image Cytometry. The cell-level frequency of NK2 Homeobox 1 (NKX2-1), Keratin 7 (KRT7), and Thyroglobulin (TG) protein staining were quantitatively evaluated by high-content imaging across huThyrEC cell line variants (1-4) in two medium formulations (huThyrEC and h7H) for verification of thyroid follicular epithelial cell enrichment. Data are the % positive expression frequency (mean ± SD) of two replicates. 

This dataset is associated with the following publication:
Hopperstad, K., T. Truschel, T. Wahlicht, W. Stewart, A. Eicher, T. May, and C. Deisenroth. Characterization of Novel Human Immortalized Thyroid Follicular Epithelial Cell Lines.   Applied In Vitro Toxicology. Mary Ann Liebert, Inc., Larchmont, NY, USA, 7(2): 39-49, (2021).

Tags: endocrine-toxicology, in-vitro-toxicology, organotypic-culture-model, thyroid, tipping-points, vembryo, virtual-embryo, virtual-tissues
Organization: U.S. Environmental Protection Agency
Dataset for ORD-033372: Biological Thresholds Derived from Common Measures in Rat Studies are Predictive of Liver Tumorigenic Chemicals

Microarray experiments used in the study. 

This dataset is associated with the following publication:
Corton, J., K. Korunes, J. Abedini, H. El-Masri, J. Brown, K. Friedman, Y. Liu, C. Martini, S. He, and J. Rooney. Thresholds Derived from Common Measures in Rat Studies are Predictive of Liver Tumorigenic Chemicals.   TOXICOLOGIC PATHOLOGY. Society of Toxicology, RESTON, VA,  48(7): 857-874, (2020).

Tags: 2-year-bioassay, biomarker, liver-cancer, toxicogenomics, transcript-profiling
Organization: U.S. Environmental Protection Agency
Little Lusk Creek and Sycamore Branch

Aquatic invertebrate taxonomic composition (abundance) and flow intermittency data from Little Lusk Creek and Sycamore Branch. 

This dataset is associated with the following publication:
Crabot, J., C.P. Mondy, P. Usseglio-Polatera, K. Fritz, P.J. Wood, M.J. Greenwood, M.T. Bogan, E.I. Meyer, and T. Datry. A global perspective on the functional responses of stream communities to flow intermittence.   ECOGRAPHY. Blackwell Publishing, Malden, MA, USA, 44(10): 1511-1523, (2021).

Tags: biodiversity-loss, fragmentation, global-change, life-history-traits, temporary-rivers
Organization: U.S. Environmental Protection Agency
Full data appendix

General cognitive ability, often referred to as ‘general intelligence’, comprises a variety of correlated abilities. Childhood general cognitive ability is a well-studied area of research and can be used to predict social outcomes and perceived success. Early life stage (e.g., prenatal, postnatal, toddler) exposures to stressors (i.e., chemical and non-chemical stressors from the total (built, natural, social) environment) can impact the development of childhood cognitive ability. Building from our systematic scoping review (Ruiz et al., 2016), we conducted a meta-analysis to evaluate more than 100 stressors related to cognitive development. Our meta-analysis identified 23 stressors with a significant increase in their likelihood to influence childhood cognitive ability by 10% or more, and 80 stressors were observed to have a statistically significant effect on cognitive ability. Stressors most impactful to cognition during the prenatal period were related to maternal health and the mother’s ability to access information relevant to a healthy pregnancy (e.g., diet, lifestyle). Stressors most impactful to cognition during the early childhood period were dietary nutrients (infancy), quality of social interaction (toddler), and exposure to toxic substances (throughout early childhood). In conducting this analysis, we examined the relative impact of real-world exposures on cognitive development to attempt to understand the inter-relationships between exposures to both chemical and non-chemical stressors and early developmental life stages. Our findings suggest that the stressors observed to be the most influential to childhood cognitive ability are not permanent and can be broadly categorized as activities/behaviors which can be modified to improve childhood cognition. This meta-analysis supports the idea that there are complex relationships between a child’s total environment and early cognitive development. 

This dataset is associated with the following publication:
Nilsen, F., J. Ruiz, and N. Tulve. A Meta-Analysis of Stressors from the Total Environment Associated with Children’s General Cognitive Ability.   International Journal of Environmental Research and Public Health. Molecular Diversity Preservation International, Basel,  SWITZERLAND, 17(15): 5451, (2020).

Tags: chemical, children, cognition, development, environmental-health, non-chemical, risk-factors
Organization: U.S. Environmental Protection Agency
EK60 Water Column Sonar Data Collected During NH1001

2010 Winter CalCOFI. The California Cooperative Oceanic Fisheries Investigations (CalCOFI) are a unique partnership of the California Department of Fish and Wildlife, NOAA Fisheries Service and Scripps Institution of Oceanography. The organization was formed in 1949 to study the ecological aspects of the sardine population collapse off California. Today our focus has shifted to the study of the marine environment off the coast of California, the management of its living resources, and monitoring the indicators of El Nino and climate change. CalCOFI conducts quarterly cruises off southern and central California, collecting a suite of hydrographic and biological data on station and underway.  Data collected at depths down to 500 m include: temperature, salinity, oxygen, phosphate, silicate, nitrate and nitrite, chlorophyll, transmissometer, PAR, C14 primary productivity, phytoplankton biodiversity, zooplankton biomass, and zooplankton biodiversity.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, doc/noaa/nmfs, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, national marine fisheries service, nesdis, noaa, north pacific ocean, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
volatile organic compounds measurements

volatile organic compound concentrations. 

This dataset is associated with the following publication:
Breen, M., V. Isakov, S. Prince, K. McGuinness, P. Egeghy, B. Stephens, S. Arunachalam, D. Stout, R. Walker, L.M. Alston, A. Rooney, K. Taylor, and T. Buckley. Integrating Personal Air Sensor and GPS to Determine Microenvironment-Specific Exposures to Volatile Organic Compounds.   Sensors. MDPI AG, Basel,  SWITZERLAND, 21(16): 5659, (2021).

Tags: air-quality
Organization: U.S. Environmental Protection Agency
Figure data for article "Acidity and the multiphase chemistry of atmospheric aqueous particles and clouds"

Noting here that data used to make figures in "Acidity and the multiphase chemistry of atmospheric aqueous
particles and clouds" article can be found within the paper and associated supplement. This dataset is not publicly accessible because: Figure data are already embedded in the paper tables/supplement by authors external to the EPA. It can be accessed through the following means: The figure data are found within the paper tables and supplemental information (SI) and thus can be accessed by downloading the paper and SI. One may also contact co-authors, V. Faye McNeill (vfm2103@columbia.edu) and/or Hartmut Herrmann (herrmann@tropos.de) for additional information. Format: Data used for the figures are provided in the paper tables and supplement at the following link: https://doi.org/10.5194/acp-2021-58. 

This dataset is associated with the following publication:
Tilgner, A., T. Schaefer, B. Alexander, M. Barth, J. Collett, K. Fahey, A. Nenes, H. Pye, H. Herrmann, and V.F. McNeill. Acidity and the multiphase chemistry of atmospheric aqueous particles and clouds.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 21(17): 13483–13536, (2021).

Tags: acidity, aqueous-aerosol, clouds, multiphase-chemistry
Organization: U.S. Environmental Protection Agency
Acton Lake Methane_Waldo et al_2020

This dataset summarizes methane emission rates and relationships with biophysical variables. 

This dataset is associated with the following publication:
Waldo, S., J. Beaulieu, W. Barnett, A. Balz, M. Vanni, T. Williamson, and J. Walker. Temporal trends in methane emissions from a small eutrophic reservoir: the key role of a spring burst.   Biogeosciences. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 18(19): 5291-5311, (2021).

Tags: aquatic-biogeochemistry, eddy-covariance, greenhouse-gas-emissions, methane
Organization: U.S. Environmental Protection Agency
EM710 Water Column Sonar Data Collected During W00476

W00476 Hydrographic Survey (EM710)

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, north pacific ocean, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce