Data from: Understanding genetic architecture overcomes tradeoffs between seed quality and insect resistance

<p dir="ltr"><b>Phenotypes_raw_sunflower_pericarp.xlsx</b><b> </b></p><p dir="ltr">Six tabs containing phenotypic data for sunflower pericarp, oil content, and banded sunflower moth damage measured in recombinant inbred lines (RIL) and sunflower association mapping (SAM) population. The first 3 tabs contain phenotypes for RIL population and the last 3 tabs contain phenotypes from the SAM population. </p><p dir="ltr">RIL_strength_thickness: ‘geno’ contains the names of the RIL, ‘year’ is the year evaluated, ‘rep’ is the repetition, ‘plant’ is the plant sampled, ‘pericarp_strength’ and ‘pericarp_thickness’ are the traits measured. </p><p dir="ltr">RIL_oil: ‘geno’ contains the names of the RIL, ‘year’ is the year evaluated, ‘rep’ is the repetition, and ‘oil’ is the measured oil content. </p><p dir="ltr">RIL_BSM: ‘geno’ contains the names of the RIL, ‘year’ is the year evaluated, ‘seed’ the number of seed imaged, ‘empty’ the number of seeds with no achene, ‘moth_damage’ the number of seed with moth damage, and ‘percent_moth_damaged’ is the percentage of non-empty seed with moth damage. </p><p dir="ltr">SAM_thickness_2016: ‘SAM’ contains the name of the SAM line. The other column names denote the head and achene number from which pericarp thickness below was measured in 2016. For example, ‘head1_achene1’ means the first head and first achene from the first head, and ‘head1_achene2’ is the second achene sampled from the first head.  </p><p dir="ltr">SAM_thickness_2015: ‘SAM’ contains the name of the SAM line. The other column names denote the head and achene number from which pericarp thickness below was measured in 2015. For example, ‘head1_achene1’ means the first head and first achene from the first head, and ‘head1_achene2’ is the second achene sampled from the first head.  </p><p dir="ltr">SAM_oil: ‘SAM’ contains the name of the SAM line, ‘year’ is the year evaluated, ‘plant’ is the plant sampled and ‘oil’ is the measured oil content. </p><p dir="ltr"><b>HA467xPI170415 Starting Genotypes</b><b> </b></p><p dir="ltr">SNP prior to filtering for the RIL population developed from HA467 × PI170415. Row names are SNP names and contain chromosome number and physical position. Column names contain the RIL names. Last two columns contain parental genotypes. Homozygotes are coded as 0|0 and 1|1 and heterozygous calls as 1|0 or 0|1.  </p><p dir="ltr"><b>Oil_linkageMap.xls & Pericarp_linkageMap.xls</b><b> </b></p><p dir="ltr">Input for IciMapping for oil content and pericarp traits measured in the RIL population. The purpose of including these files is to list the SNP used in the linkage map. This information can be found in Chromosome and Genotype tabs. An explanation of the other tabs can be found in IciMapping manual: https://isbreedingen.caas.cn/software/qtllcimapping/294607.htm <br><br><br>*This work used resources of the Center for Computationally Assisted Science and Technology (CCAST) at North Dakota State University, which were made possible in part by NSF MRI Award No. 2019077.</p>

Tags: insect-resistance, oil-content, pericarp-strength, qtl-mapping, quantitative-trait-loci, sunflower
Organization: Department of Agriculture