AndreaBozzo/ceres-open-data-index huggingface dataset:
NEEAR Water Study-Chemicals

data includes human health survey data, linked records of chemical measures and measures of water quality. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: Upon request to Tim Wade (wade.tim@epa.gov). Format: Data are stored in SAS datasets with documented codebooks. 

This dataset is associated with the following publication:
Napier, M., C. Poole, J. Stewart, D. Weber, S. Glassmeyer, D. Kolpin, E. Furlong, A. Dufour, and T. Wade. Exposure to human-associated chemical markers of fecal contamination and self-reported illness among swimmers at recreational beaches.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 52(13): 7513-7523, (2018).

Tags: beach-water-quality, diarrhea, swimming
Organization: U.S. Environmental Protection Agency
NEEAR Water Study-human markers

Data set consists of survey data containing PII, water quality sample test results for fecal indicator bacteria and additional supporting information. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: Upon request to Tim Wade (wade.tim@epa.gov). Format: Data are stored in SAS datasets with codebooks in MS Word  documenting variables. 

This dataset is associated with the following publication:
Napier, M., R. Haugland, C. Poole, A. Dufour, J. Stewart, D. Weber, M. Varma, J. Lavender, and T. Wade. Exposure to human-associated fecal indicators and self-reported illness among swimmers at recreational beaches: A cohort study.   ENVIRONMENTAL HEALTH. Academic Press Incorporated, Orlando, FL, USA, 16(1): 103, (2017).

Tags: beach-water-quality, diarrhea, swimming
Organization: U.S. Environmental Protection Agency
Meta data

the data that was used to populate the tables and figures in the document. 

This dataset is associated with the following publication:
Huang, X., and T. Tolaymat. Gas Quantity and Composition from the Hydrolysis of Salt Cake from Secondary Aluminum Processing.  Majid Abbaspour  International Journal of Environmental Science and Technology. Springer, Heidelburg,  GERMANY,  1-12, (2018).

Tags: aluminum-dross, landfills, reactive-waste
Organization: U.S. Environmental Protection Agency
Life Cycle Impact Assessment and Life Cycle Cost of both Legacy and Upgraded Systems

LCIA and LCC data for legacy and updated systems under various scenarios. 

This dataset is associated with the following publication:
Morelli, B., S. Cashman, C. Ma, J. Garland, J. Turgeon, L. Fillmore, D. Bless, and M. Nye. Effect of Nutrient Removal and Resource Recovery on Life Cycle Cost and Environmental Impacts of a Small Scale Water Resource Recovery Facility.   Sustainability. MDPI AG, Basel,  SWITZERLAND, 10(10): 1-19, (2018).

Tags: biogas, biological-nutrient-removal, chp, energy-recovery, resource-recovery
Organization: U.S. Environmental Protection Agency
Data Set for A Call for an Aloft Air Quality Monitoring Network: Need and Feasibility

This data set contains all relevant data used in the creation of the 4 illustrations in the manuscript. In all cases the data have been processed (averaged/aggregated over space and/or time) from the original data which was at finer spatial or temporal resolution. The observational data sets are publicly available from the CASTNET site. Raw model outputs can be made available by contacting the corresponding author. 

This dataset is associated with the following publication:
Mathur, R., C. Hogrefe, A. Hakami, S. Zhao, J. Szykman, and G. Hagler. A Call for an Aloft Air Quality Monitoring Network: Need, Feasibility, and Potential Value.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 52(19): 10903–10908, (2018).

Tags: atmospheric-mixing, background-pollution, boundary-layer, long-range-transport, vertical-profile
Organization: U.S. Environmental Protection Agency
Results for calcification and ingestion and retention rates of microbeads and microplastics.

Data is for three experiments. The first experiment examined calcification effects of ingested microbeads. The second experiment observed ingestion rates of four size classes of microbeads and how long they were retained. The third experiment observed and compared ingestion rates of one microbead size class and microfibers 3-5mm in length. 

This dataset is associated with the following publication:
Hankins, C., A. Duffy, and K. Drisco. Scleractinian coral microplastic ingestion: Potential calcification effects, size limits, and retention.   MARINE POLLUTION BULLETIN. Elsevier Science Ltd, New York, NY, USA, 135: 587-593, (2018).

Tags: coral, ingestion, microplastic, retention
Organization: U.S. Environmental Protection Agency
Data used and links to data and metadata

The provided link will take users to all the data and metadata used in this project. 

This dataset is associated with the following publication:
Angradi, T., P. Ringold, and K. Hall. Water clarity measures as indicators of recreational benefits provided by U.S. lakes: Swimming and aesthetics.   ECOLOGICAL INDICATORS. Elsevier Science Ltd, New York, NY, USA, 93: 1005-1019, (2018).

Tags: epa-national-lake-assessment
Organization: U.S. Environmental Protection Agency
PM and levoglucosan data

These are GC-MS data for producing the levoglucosan plot, black carbon data from an aethalometer, time series data of wind speed and normalized PM concentrations. As well as certain particle number and CO concentration data deltas. 

This dataset is associated with the following publication:
Kimbrough , S., M. Hays , B. Preston, D. Vallero , and G. Hagler. Episodic Impacts from California Wildfires Identified in Las Vegas Near-Road Air Quality Monitoring.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 50(1): 18-24, (2016).

Tags: air-quality, ambient-air, bc, co, levoglucosan, near-road, pm, wildfire
Organization: U.S. Environmental Protection Agency
Li et al nitrification inhibition review

Li et al nitrification inhibition review. 

This dataset is associated with the following publication:
Kapoor, V., X. Li, C. Impellitteri , K. Chandran, and J. Santodomingo. Use of Functional Gene Expression and Respirometry to Study Wastewater Nitrification Activity after Exposure to Low Doses of Copper.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. Ecomed Verlagsgesellschaft AG, Landsberg,  GERMANY, 23(7): 6443-6450, (2016).

Tags: nitrification, rna
Organization: U.S. Environmental Protection Agency
Methane Transect Dataset

This project area “OTM 33 Mobile Emission Measurements” covers research on remote emissions quantification with the various forms of mobile monitoring approaches. There will be multiple data sets included in this project. The metadata and data dictionaries are included with each data set. The data sets with metadata and data dictionaries are as follows:

Methane Transect data Set:   The dataset contains mobile methane concentration measurements acquired at 10 samples per second data acquisition rate, collected while driving along transects downwind of a methane source.  The data consists of GPS coordinates, methane concetrion data and transect indicators.  The controlled methane release experiment was conducted on May 15, 2010 in Durham, North Carolina, where three passes were made for the one CR experiment and the point-source release rate was controlled at S = 0.6 g/s. Additionally, the dataset contains four field studies conducted in Colorado on four separate days in July 2010, with the number of passes for each study ranging from two to five. 

This dataset is associated with the following publication:
Albertson, J., T. Foster-Wittig, A. Swingler, G. Foderaro, S. Ferrari, S. Amin, M. Modrak, H. Brantley , and E. Thoma. A Mobile Sensing Approach for Regional Surveillance of Fugitive Methane Emissions in Oil and Gas Production.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 50(5): 2487-2497, (2015).

Tags: fugitive-emissions, gmap, methane, mobile-measurements, otm-33
Organization: U.S. Environmental Protection Agency
Role of TRPA1 in acrolein cardiac effects in mice

Cardiac and ventilatory physiological data for mice exposed to acrolein. 

This dataset is associated with the following publication:
Kurhanewicz, N., A. Ledbetter, A. Farraj, and M. Hazari. TRPA1 mediates the cardiac effects of acrolein through parasympathetic dominance but also sympathetic modulation in mice.   TOXICOLOGY AND APPLIED PHARMACOLOGY. Academic Press Incorporated, Orlando, FL, USA, 347: 104-114, (2018).

Tags: air-pollution, autonomic, cardiovascular, heart-rate-variability, mice, reflex, trpa1, ventilatory-function
Organization: U.S. Environmental Protection Agency
HTAP_v2.2: a mosaic of regional and global emission gridmaps for 2008 and 2010 to study hemispheric transport of air pollution.

This dataset provides the EPA portion of a compilation of different regional gridded inventories, including  data from Environment Canada for Canada, the European Monitoring and Evaluation Programme (EMEP) and Netherlands Organisation for Applied Scientific Research (TNO) for Europe, and the Model Inter-comparison Study in Asia (MICS-Asia)’s for China, India and other Asian countries, and  gap-filled emission gridmaps of the Emissions Database for Global Atmospheric Research (EDGARv4.3) for the rest of the world (mainly South-America, Africa, Russia and Oceania).
The EPA data is included as netCDF formatted datasets at 0.1º × 0.1º resolution for 2010. This was the “raw” data that was incorporated into the global mosaics.
Emissions from seven main categories of human activities (power, industry, residential, agriculture, ground transport, aviation and shipping) were estimated and spatially distributed on a common grid of 0.1º × 0.1º longitude-latitude, to yield monthly, global, sector-specific gridmaps for each substance and year.
Emission summaries from the supplemental information in the published journal article are also included. 

This dataset is associated with the following publication:
Janssens-Maenhout, G., M. Crippa, D. Guizzardi, F. Dentener, M. Muntean, G. Pouliot, T. Keating, Q. Zhang, J. Kurokawa, R. Wankmuller, H. Denier van der Gon, J.J.P. Kuenen, Z. Klimont, G. Frost, S. Darras, B. Koffi, and M. Li. HTAP_v2.2: a mosaic of regional and global emission grid maps for 2008 and 2010 to study hemispheric transport of air pollution.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 15(19): 11411-11432, (2015).

Tags: air-quality-modeling, cmaq, global-emission-inventory, htap, model-evaluation
Organization: U.S. Environmental Protection Agency
Varroapop sensitivity analysis scripts and output

Code repository for scripts and model output associated with sensitivity analysis of the VarroaPop honeybee hive simulation model. 

This dataset is associated with the following publication:
Kuan, C., G. DeGrandi-Hoffman, R. Curry, K. Garber, A. Kanarek, M. Snyder, K. Wolfe, and T. Purucker. Sensitivity analyses for simulating pesticide impacts on honey bee colonies.   ENVIRONMENTAL MODELLING AND SOFTWARE. Elsevier Science Ltd, New York, NY, USA, 376: 15-27, (2018).

Tags: colony-population-model, honey-bee, pesticides, pollinator, sensitivity-analysis
Organization: U.S. Environmental Protection Agency
Seasonal patterns of bole water content in old growth Douglas-fir

Supporting data for figures and tables in publication. See Readme file. 

This dataset is associated with the following publication:
Beedlow, P., R. Waschmann, E. Lee, and D.T. Tingey. Seasonal patterns of bole water content in old growth Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco).   AGRICULTURAL AND FOREST METEOROLOGY. Elsevier Science Ltd, New York, NY, USA, 242: 109-119, (2017).

Tags: climate-change, dendrochronology, douglas-fir, pacific-decadal-oscillation, pacific-northwest, swiss-needle-cast
Organization: U.S. Environmental Protection Agency
Wetland Model Nitrogen and Carbon Data (Kent Island, MD, May 1995 - May 1997)

This data are composed of precipitation, wetland water depth, volumetric soil moisture, nitrogen and carbon concentrations measured into and out of a wetland, and model computed soil moisture content as well as nitrogen and carbon loading from the wetland. The wetland is a restored treatment wetland, located in Kent Island, MD. 

This dataset is associated with the following publication:
Sharifi, A., M. Hantush, and L. Kalin. Modeling Nitrogen and Carbon Dynamics in Wetland Soils and Water Using Mechanistic Wetland Model.  Rao S. Govindaraju  Journal of Hydrologic Engineering. American Society of Civil Engineers  (ASCE), Reston, VA, USA, 22(1): 1-18, (2017).

Tags: aerobic, anaerobic, bayesian-statistics, carbon, glue, monte-carlo-method, nitrogen, phosphorus, process-based-model, richards-equation, sensitivity-analysis, uncertainty-estimation, unsaturated-soil, wetland-hydrology, wetlands
Organization: U.S. Environmental Protection Agency
Ozone and IUGR CMiller

Data related to the effects of peri-implantation ozone exposure on maternal and fetal health outcomes at the end of gestation. 

This dataset is associated with the following publication:
Miller, C., J. Dye, A. Ledbetter, M. Schladweiler, J. Richards, S. Snow, C. Wood, A. Henriquez, L. Thompson, A. Farraj, M. Hazari, and U. Kodavanti. Uterine Artery Flow and Offspring Growth in Long-Evans Rats following Maternal Exposure to Ozone during Implantation.   ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, USA, 125(12): 127005, (2017).

Tags: fetal-growth-assessment, ozone, preeclampsia, pregnancy
Organization: U.S. Environmental Protection Agency
Great Sippewissett Marsh 2016 Data

Data in this spreadsheet include methane, carbon dioxide, and nitrous oxide fluxes; soil pH; surface and subsurface soil temperature; and surface elevation relative to mean high water for study plots at Great Sippewissett Marsh collected in July, August, September and October 2016. 

This dataset is associated with the following publication:
Martin, R., C. Wigand, E. Elmstrom, J. Lloret, and I. Valiela. Long-term nutrient addition increases respiration and nitrous oxide emissions in a New England salt marsh.   Ecology and Evolution. Wiley-Blackwell Publishing, Hoboken, NJ, USA, 8(10): 4958–4966, (2018).

Tags: cape-cod, carbon-dioxide, methane, nitrogen, nitrous-oxide, salt-marsh
Organization: U.S. Environmental Protection Agency
Three-dimensional WRF and CMAQ 2-km simulation output for California for January/February 2013

These data include three-dimensional meteorological (WRF) and air quality (CMAQ) model output for a 2-km domain covering the San Joaquin Valley (SJV) of California for January and February of 2013. The WRF and CMAQ parameters used in the analysis presented in the research effort are listed in the attached spreadsheet. The WRF/CMAQ data themselves are located on EPA's asm tape archive in the directories below. These data are available upon request from the authors, specifically K. Wyat Appel (appel.wyat@epa.gov).

/asm/MOD3EVAL/DISCOVERAQ/SJV/2km_Meso/WRF
/asm/MOD3EVAL/DISCOVERAQ/SJV/2km_Meso/CMAQ. 

This dataset is associated with the following publication:
Friberg, M., R. Kahn, J. Limbacher, W. Appel, and J. Mulholland. Constraining chemical transport PM2.5 modeling outputs using surface monitor measurements and satellite retrievals: application over the San Joaquin Valley.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 18: 12891-12913, (2018).

Tags: air-quality-modeling, model-evaluation, pm2-5-air-quality-modeling, satellite-air-quality
Organization: U.S. Environmental Protection Agency
DEPS sulfate measurements

data consist of measurements of outdoor and personal sulfate measurements. 

This dataset is associated with the following publication:
Breen, M., Y. Xu, A. Schneider, R. Williams, and R. Devlin. Modeling individual exposures to ambient PM2.5 in the diabetes and the environment panel study (DEPS).   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 626: 807-816, (2018).

Tags: building-infiltration-of-air-pollutants, exposure-modeling, fine-particulate-matter, health-study
Organization: U.S. Environmental Protection Agency
Adrenergic and glucocorticoid receptor antagonists reduce ozone-induced lung injury and inflammation

This data set contains one Excel file. In this file are all the data pertaining to the effects of propranolol and mifepristone on ozone induced lung injury and inflammation . The different tabs of the spreadsheet pertain to each figure found in the manuscript. 

This dataset is associated with the following publication:
Henriquez, A., S. Snow, M. Schladweiler, C. Miller, J. Dye, A. Ledbetter, J. Richards, K. Mauge-Lewis, M. McGee, and U. Kodavanti. Adrenergic and glucocorticoid receptor antagonists reduce ozone-induced lung injury and inflammation.   TOXICOLOGY AND APPLIED PHARMACOLOGY. Academic Press Incorporated, Orlando, FL, USA, 339: 161-171, (2018).

Tags: adrenergic-receptor-agonist, glucocorticoid-receptor-agonist, lung-inflammation, lung-injury, ozone, stress-hormones
Organization: U.S. Environmental Protection Agency
NWCA Enzyme Decomposition Model

Dataset contains wetland site information, microbial respiration and ecoenzyme data, enzyme decomposition model, and the program file to run the data analyses. 

This dataset is associated with the following publication:
Hill , B., C. Elonen , L. Seifert, A. May, and E. Tarquinio. Microbial ecoenzyme stoichiometry, nutrient limitation, and organic matter decomposition in wetlands of the conterminous United States.   Wetlands Ecology and Management. Springer Science and Business Media B.V;Formerly Kluwer Academic Publishers B.V.,   GERMANY, 26: 425-439, (2018).

Tags: climate, decomposition, ecoenzymes, land-cover, soil, stoichiometry, wetlands
Organization: U.S. Environmental Protection Agency
Comparative Toxicity of Smoldering Versus Flaming Emissions from Various Biomass Fuels

This dataset includes physico-chemical characteristics of biomass smoke of five different fuels (red oak, peat, pine needles, pine, and eucalyptus) generated from a tube furnace system at two different combustion phases (smoldering and flaming) and also provides two toxicological outcomes (lung toxicity in mice and mutagenicity in Salmonella) associated with exposures to the biomass smoke PM collected by a cryo-trap system. 

This dataset is associated with the following publication:
Kim, Y.H., S. Warren, T. Krantz, C. King, R. Jaskot, W.T. Preston, B. George, M. Hays, M. Landis, M. Higuchi, D. DeMarini, and I. Gilmour. Mutagenicity and Lung Toxicity of Smoldering Versus Flaming Emissions from Various Biomass Fuels: Implications for Health Effects from Wildland Fires.   ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, USA, 126(1): 1, (2018).

Tags: biomass-smoke, emission-factor, lung-toxicity, mutagenicity, particulate-matter, particulate-matter-pm, wildfires
Organization: U.S. Environmental Protection Agency
Mass-spectrometric identification of cyclic phenone metabolites produced by rainbow trout liver slices

Dataset  consists of 2 main files as follows: 
1. All main and Supplemental MS final figures used for manuscript preparation for better viewing (pdf file). Figures are copies of raw or analyzed data directly from the mass spectrometers experimental files generated during research.   Explanation of figures is provided in manuscript's text 
2. Xcel file (Mass calculator CPK metabolites original), containing a significant amount of  MS raw data obtained during the research for parent chemicals and metabolites. Emphasis was provided to the analyses of CPK metabolites. The file contains an Index page stating the content of each sheet. Because CPK metabolites were labelled differently as the research progressed, a Legend with the different labeling of each metabolite is presented on each sheet. 

This dataset is associated with the following publication:
Kolanczyk, R., J. Serrano, M. Tapper, and P. Schmieder. A comparison of fish pesticide metabolic pathways with those of the rat and goat.   REGULATORY TOXICOLOGY AND PHARMACOLOGY. Elsevier Science Ltd, New York, NY, USA, 94: 124-143, (2018).

Tags: cyclic-phenones, endocrine-disruption, estrogen-receptor, fish-liver-slices, gc-ms, in-vitro-assays, lc-ms-ms, lc-tof-ms, metabolism, vtg-gene-expression
Organization: U.S. Environmental Protection Agency
Effect of contolled and spontaneous breathing on exhaled breath condensate characteristics

The datasets provide physicochemical endpoint values (volumes, pH) for exhaled breath condensate collected with spontaneous breathing and "controlled" breathing patterns. The controlled breathing was enabled with audiovisual signals with a new instrument. The variability of the endpoint values was analyzed. 

This dataset is associated with the following publication:
Winters, B., J. Pleil, M. Angrish, M. Stiegel, T. Risby, and M. Madden. Standardization of the collection of exhaled breath condensate and exhaled breath aerosol using a feedback regulated sampling device.   Journal of Breath Research. Institute of Physics Publishing, Bristol,  UK, 11(4): 1, (2017).

Tags: cellular-volatiles, cytochromep450, high-throughput-in-vitro-screening-assay
Organization: U.S. Environmental Protection Agency
Nitrogen and nitrogen isotope data for wheat and barley exposed to CeO2 nanoparticles

The effects of cerium oxide nanoparticles (CeO2-NPs) on 15N/14N ratio (δ15N) in wheat and barley were investigated.  Seedlings were exposed to 0 and 500 mg CeO2-NPs/L (Ce-0 and Ce-500, respectively) in hydroponic suspension supplied with NH4NO3, NH4+, or NO3-.  N uptake and δ15N discrimination (i.e. differences in δ15N of plant and δ15N of N source) were measured.  Results showed that N content and 15N abundance decreased in wheat but increased in barley.  Ce-500 only induced whole-plant δ15N discrimination (-1.48‰, P ≤ 0.10) with a simultaneous decrease (P ≤ 0.05) in whole-plant δ15N (-3.24‰) compared to Ce-0 (-2.74‰) in wheat in NH4+.  Ce-500 decreased (P ≤ 0.01) root δ15N of wheat in NH4NO3 and NH4+ (3.23 and -2.25‰, respectively) compared to Ce-0 (4.96 and -1.27‰, respectively), but increased (P ≤ 0.05) root δ15N of wheat in NO3- (3.27‰) compared to Ce-0 (2.60‰).  Synchrotron micro-XRF revealed the presence of CeO2-NPs in shoots of wheat and barley regardless of N source.  Although the longer-term consequences of CeO2-NP exposure on N uptake and metabolism are unknown, the results clearly show the potential for ENMs to interfere with plant metabolism of critical plant nutrients such as N even when toxicity is not observed. 

This dataset is associated with the following publication:
Rico, C.M., M. Johnson, M.A. Marcus, and C.P. Andersen. Shifts in N and δ15N in wheat and barley exposed to cerium oxide nanoparticles.   NanoImpact. Elsevier B.V., Amsterdam,  NETHERLANDS, 11: 156-163, (2018).

Tags: ammonium-nitrate, engineered-nanomaterials-enms, intergenerational-effects, isotope, isotopic-discrimination, nitrogen, synchrotron-micro-xrf
Organization: U.S. Environmental Protection Agency