AndreaBozzo/ceres-open-data-index huggingface dataset:
NCEI Standard Product: World Ocean Database (WOD)

The World Ocean Database (WOD) is the world's largest publicly available uniform format quality controlled ocean profile dataset. Ocean profile data are sets of measurements of an ocean variable vs. depth at a single geographic location within a short (minutes to hours) temporal period in some portion of the water column from the surface to the bottom. To be considered a profile for the WOD, there must be more than a single depth/variable pair. Multiple profiles at the same location from the same set of instruments is an oceanographic cast. Ocean variables in the WOD include temperature, salinity, oxygen, nutrients, tracers, and biological variables such as plankton and chlorophyll. Quality control procedures are documented and performed on each cast and the results are included as flags on each measurement. The WOD contains the data on the originally measured depth levels (observed) and also interpolated to standard depth levels to present a more uniform set of iso-surfaces for oceanographic and climate work.

The source of the WOD is more than 20,000 separate archived datasets contributed by institutions, project, government agencies, and individual investigators from the United States and around the world. Each dataset is available in its original form in the National Centers for Environmental Information data archives. All datasets are converted to the same standard format, checked for duplication within the WOD, and assigned quality flags based on objective tests. Additional subjective flags are set upon calculation of ocean climatological mean fields which make up the World Ocean Atlas (WOA) series.

The WOD consists of periodic major releases and quarterly updates to those releases. Each major release is associated with a concurrent release of a WOA release, and contains final quality control flags used in the WOA, which includes manual as well as automated steps. Each quarterly update release includes additional historical and recent data and preliminary quality control. The latest major release was WOD 2018 (WOD18), which includes nearly 16 million oceanographic casts, from the second voyage of Captain Cook (1772) to the modern Argo floats (end of 2017).

The WOD presents data in netCDF ragged array format following the Climate and Forecast (CF) conventions for ease of use mindful of space limitations.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
GHRSST Level 2P Atlantic Regional Skin Sea Surface Temperature from the Spinning Enhanced Visible and InfraRed Imager (SEVIRI) on the Meteosat Second Generation (MSG-1) satellite (GDS version 1)

The Meteosat Second Generation (MSG) satellites are spin stabilized geostationary satellites operated by the European Organization for the Exploitation of Meteorological Satellites (EUMETSAT) to provide accurate weather monitoring data through its primary instrument the Spinning Enhanced Visible and InfraRed Imager (SEVIRI), which has the capacity to observe the Earth in 12 spectral channels.  Eight of these channels are in the thermal infrared, providing among other information, observations of the temperatures of clouds, land and sea surfaces at approximately 5 km resolution with a 15 minute duty cycle. This Group for High Resolution Sea Surface Temperature (GHRSST) dataset produced by Meteo France/ Centre de Meteorologie Spatiale (CMS), is derived from the SEVIRI instrument on the first MSG satellite (also known as Meteosat-8) that was launched on 28 August 2002. Skin sea surface temperature (SST) data are calculated from the infrared channels of SEVIRI at full resolution on a hourly basis. Remapping of original pixel size to 11.6 km resolution is made by spatial averaging, and a 3-hourly temporal resolution SST is created by averaging the hourly SSTs having the best confidence level. Data from different MSG satellites are not averaged together. L2P data products with Single Sensor Error Statistics (SSES) are then derived following the GHRSST-PP Data Processing Specification (GDS) version 1.5.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
GHRSST Level 4 MW_OI Global Foundation Sea Surface Temperature analysis version 5.0 from REMSS (GDS version 2)

A Group for High Resolution Sea Surface Temperature (GHRSST) global Level 4 sea surface temperature analysis produced daily on a 0.25-degree grid at Remote Sensing Systems. This product uses optimal interpolation (OI) from microwave (MW) sensors including the Global Precipitation Measurement (GPM) Microwave Imager (GMI), the Tropical Rainfall Measuring Mission (TRMM) Microwave Imager (TMI), the NASA Advanced Microwave Scanning Radiometer-EOS (AMSRE), the Advanced Microwave Scanning Radiometer 2 (AMSR2) onboard the GCOM-W1 satellite, and WindSat operates on the Coriolis satellite. The through-cloud capabilities of microwave radiometers provide a valuable picture of global sea surface temperature (SST). This analysis does not use any in situ SST data such as drifting buoy SST. Comparing with previous version 4.0 dataset, the version 5.0 has made the updates in several areas, including the diurnal warming model, the sensor-specific error statistics (SSES) for each microwave sensor, the sensor correlation model, and the quality mask.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NODC Standard Product: World Ocean Database 2009 (2 disc set) (NCEI Accession 0094887)

World Ocean Database 2009 (WOD09) is a collection of scientifically quality-controlled ocean profile and plankton data that includes measurements of temperature, salinity, oxygen, phosphate, nitrate, silicate, chlorophyll, alkalinity, pH, pCO2, TCO2, Tritium, delta-13Carbon, delta-14Carbon, delta-18Oxygen, Freons, Helium, delta-3Helium, Neon, and plankton. A discussion of data sources is provided. Data are both historical and modern with the most recent data from 2008.

World Ocean Database 2009 is an update of World Ocean Database 2005. It expands on the older version by including new variables, data types, and additional historical, as well as modern, observations. It contains all data from earliest observation through our collection as of Dec. 31, 2009. The 2009 database, updated from the 2005 edition, is significantly larger providing approximately 9.1 million temperature profiles and 3.5 million salinity reports. The 2009 database also captures 29 categories of scientific information from the oceans, including oxygen levels and chemical tracers, plus information on gases and isotopes that can be used to trace the movement of ocean currents. An online version of the World Ocean Database is updated quarterly.

DVD-ROM Disc 1 contains:

OSD, Ocean Station Data Low & High-resolution CTD/XCTD, Conductivity-Temperature-Depth data Plankton data

DVD-ROM Disc 2 contains:

MBT, Mechanical / Digital / Micro Bathythermograph data XBT, Expendable Bathythermograph data SUR, Surface-only data APB, Autonomous Pinniped data MRB, Moored buoy data PFL, Profiling float data DRB, Drifting buoy data UOR, Undulating Oceanographic Recorder data GLD, Glider data

This DVD contains six directories named:

CODES (contains codes associated with the secondary header, biological header, and taxa data); DATA (contains yearly sorted data, dating from 1773 though 2009); DOC (contains the documentation); ODV (contains the Ocean Data View software for viewing the WOD09 data, developed by Dr. Reiner Schlitzer, AWI. This software will decompress selected files and offers users several options for viewing the WOD09 data. ODV works on PCs only); PROGRAMS (contains source code and executables for programs which are examples of how to read the data and can be used to reformat the data into comma-delimited or space-delimited forms); UTILS (contains the gzip utility for uncompressing WOD09 data files).

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - Rice Lake, North Dakota 2,000 Year Ostracode Mg/Ca Data

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Lake. The data include parameters of paleolimnology with a geographic location of North Dakota, United States Of America. The time period coverage is from 2060 to -49 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: climate indicators, continent, doc/noaa/nesdis/ncei, earth science, geochemistry, lake level, latitude 48.00806, longitude -101.53028, material: null, material: ostracod, national centers for environmental information, nesdis, noaa, north america, north dakota, ocean/lake records, paleoclimate, paleoclimate indicators, paleolimnology, rice lake, u.s. department of commerce, united states of america, what: age, what: magnesium/calcium
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - Alaska Lake Sediment Data and Holocene Climate Reconstructions

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Lake. The data include parameters of paleolimnology with a geographic location of Alaska, United States Of America. The time period coverage is from Unavailable begin date to Unavailable end date in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: age control, alaska, climate indicators, continent, doc/noaa/nesdis/ncei, earth science, geochemistry, lake level, latitude 67.66667, latitude 68.68361, longitude -149.075, magnetic susceptibility, material: carbonate, material: cellulose, material: dry sediment, material: null, material: organic matter, material: sediment, meli lake, national centers for environmental information, nesdis, noaa, north america, ocean/lake records, oxygen isotopes, paleoclimate, paleoclimate indicators, paleolimnology, physical properties, tangled up lake, u.s. department of commerce, united states of america, what: carbon/nitrogen, what: delta 13c, what: delta 15n, what: delta 18o, what: density, what: depth, what: organic carbon, what: organic matter, what: volume magnetic susceptibility
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - Marcella Lake, Yukon 4,500 Year Stable Isotope Data

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Lake. The data include parameters of paleolimnology with a geographic location of Yukon Territory, Canada. The time period coverage is from 4732 to -50 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: canada, climate indicators, continent, doc/noaa/nesdis/ncei, earth science, latitude 60.073306, longitude -133.805462, marcella lake, material: carbonate, material: null, national centers for environmental information, nesdis, noaa, north america, ocean/lake records, oxygen isotopes, paleoclimate, paleoclimate indicators, paleolimnology, u.s. department of commerce, what: age, what: delta 13c, what: delta 18o, what: depth, yukon territory
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - Pecos River, New Mexico 700 Year Streamflow Reconstruction

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Climate Reconstruction. The data include parameters of climate reconstructions|tree ring with a geographic location of New Mexico, United States Of America. The time period coverage is from 640 to -63 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: climate indicators, climate reconstructions|tree ring, continent, doc/noaa/nesdis/ncei, earth science, latitude, longitude, material: null, material: ring width, national centers for environmental information, nesdis, new mexico, noaa, north america, paleoclimate, paleoclimate indicators, paleoclimate reconstructions, pecos river basin, reconstructions, streamflow, streamflow reconstruction, u.s. department of commerce, united states of america, what: age, what: streamflow
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
U.S. State and Territorial Orders Closing and Reopening Bars Issued from March 11, 2020 through May 31, 2021 by County by Day

State and territorial executive orders, administrative orders, resolutions, and proclamations are collected from government websites and cataloged and coded using Microsoft Excel by one coder with one or more additional coders conducting quality assurance.

Data were collected to determine when bars in states and territories were subject to closing and reopening requirements through executive orders, administrative orders, resolutions, and proclamations for COVID-19. Data can be used to determine when bars in states and territories were subject to closing and reopening requirements through executive orders, administrative orders, resolutions, and proclamations for COVID-19. Data consists exclusively of state and territorial orders, many of which apply to specific counties within their respective state or territory; therefore, data is broken down to the county level.

These data are derived from publicly available state and territorial executive orders, administrative orders, resolutions, and proclamations (“orders”) for COVID-19 that expressly close or reopen bars found by the CDC, COVID-19 Community Intervention & Critical Populations Task Force, Monitoring & Evaluation Team, Mitigation Policy Analysis Unit, and the CDC, Center for State, Tribal, Local, and Territorial Support, Public Health Law Program from March 11, 2020 through May 31, 2021.  These data will be updated as new orders are collected. Any orders not available through publicly accessible websites are not included in these data. Only official copies of the documents or, where official copies were unavailable, official press releases from government websites describing requirements were coded; news media reports on restrictions were excluded. Recommendations not included in an order are not included in these data. Effective and expiration dates were coded using only the date provided; no distinction was made based on the specific time of the day the order became effective or expired. These data do not necessarily represent an official position of the Centers for Disease Control and Prevention.

Tags: business-closure, business-reopening, covid-19, executive-order, government-order, legal-epidemiology, mitigation, proclamation, public-health-order, social-distancing
Organization: U.S. Department of Health & Human Services
Metadata description for Higher daily air temperature is associated with shorter leukocyte telomere length: KORA F3 and KORA F4

The data consists of a series of tables containing individual identifiers; countrywide high-resolution (1 km × 1 km) minimum, mean, and maximum daily air temperature data estimated using hybrid spatiotemporal regression-based models; daily concentrations of relative humidity (RH), ozone (O3), nitrogen dioxide (NO2), particulate matter within Augsburg, Germany; leukocyte telomere length; age (year), sex (male, female), education (years), and body mass index (BMI [kg/m2]); lifestyle characteristics, including smoking status, alcohol consumption (g/day), and physical activity; medical history of the participants, including hypertension (no/yes), angina pectoris (no/yes), myocardial infarction (no/yes), and stroke (no/yes); and current medications, including antihypertensive (no/yes), lipid-lowering (no/yes), and antidiabetic medication (no/yes). The data also contains serum total cholesterol; high-density lipoprotein (HDL); low-density lipoprotein (LDL); and triglycerides. This dataset is not publicly accessible because: The data is owned by an institute other than the EPA (Helmholtz Institute). It can be accessed through the following means: The data can be accessed by contacting the corresponding author of the study Wenli Ni (wenli.ni@helmholtz-muenchen.de). Format: The data consists of a series of tables containing individual identifiers; countrywide high-resolution (1 km × 1 km) minimum, mean, and maximum daily air temperature data estimated using hybrid spatiotemporal regression-based models; daily concentrations of relative humidity (RH), ozone (O3), nitrogen dioxide (NO2), particulate matter within Augsburg, Germany; leukocyte telomere length; age (year), sex (male, female), education (years), and body mass index (BMI [kg/m2]); lifestyle characteristics, including smoking status, alcohol consumption (g/day), and physical activity; medical history of the participants, including hypertension (no/yes), angina pectoris (no/yes), myocardial infarction (no/yes), and stroke (no/yes); and current medications, including antihypertensive (no/yes), lipid-lowering (no/yes), and antidiabetic medication (no/yes). The data also contains serum total cholesterol; high-density lipoprotein (HDL); low-density lipoprotein (LDL); and triglycerides. 

This dataset is associated with the following publication:
Ni, W., K. Wolf, S.  Breitner, S. Zhang, N. Nikolaou, C. Ward-Caviness, M. Waldenberger, C. Gieger, A. Peters, and A. Schneider. Higher daily air temperature is associated with shorter leukocyte telomere length: KORA F3 and KORA F4.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 56(24): 17815-17824, (2022).

Tags: aging, air-pollution, telomere-length, temperature
Organization: U.S. Environmental Protection Agency
GHRSST Level 4 AVHRR_AMSR_OI Global Blended Sea Surface Temperature Analysis (GDS version 1)

A Group for High Resolution Sea Surface Temperature (GHRSST) global Level 4 sea surface temperature analysis produced daily on a 0.25 degree grid at the NOAA National Climatic Data Center. This product uses optimal interpolation (OI) using data from the Advanced Very High Resolution Radiometer (AVHRR) Pathfinder Version 5 time series (when available, otherwise operational NOAA AVHRR data are used), the Advanced Microwave Scanning Radiometer-EOS (AMSR-E), and in situ ship and buoy observations. A second similar product is available back to 1981 that includes only in situ and AVHRR Pathfinder data in its analysis.  The OI analysis is a daily average SST that is bias adjusted using a spatially smoothed 7-day in situ SST average and is thus tuned to about 0.3 meter. Both day and night satellite fields are independently bias adjusted. More information is available at http://www.ncdc.noaa.gov/oa/climate/research/sst/oi-daily.php.

Tags: blended sea surface temperature, earth science, ocean temperature, oceanography, oceans, sea surface temperature
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Contrasting mercury contamination scenarios and site susceptibilities confound fish mercury burdens in Suriname, South America

Supplementary data for "Vreedzaam A, Ouboter P, Hindori-Mohangoo AD, Lepak R, Rumschlag S, Janssen S, Landburg G, Shankar A, Zijlmans W, Lichtveld MY, Wickliffe JK. Contrasting mercury contamination scenarios and site susceptibilities confound fish mercury burdens in Suriname, South America. Environ Pollut. 2023 Nov 1;336:122447. doi: 10.1016/j.envpol.2023.122447. Epub 2023 Aug 28. PMID: 37648055; PMCID: PMC10756560.". 

This dataset is associated with the following publication:
Vreedzaam, A., P. Ouboter, A. Hindori-Mohangoo, R. Lepak, S. Rumschlag, S. Janssen, G. Landburg, A. Shankar, W. Zijlmans, M. Lichtveld, and J. Wickliffe. Contrasting mercury contamination scenarios and site susceptibilities confound fish mercury burdens in Suriname, South America.   ENVIRONMENTAL POLLUTION. Elsevier Science Ltd, New York, NY, USA, 336: 122447, (2023).

Tags: fish, gold-mining, hg-isotopes, mercury, suriname
Organization: U.S. Environmental Protection Agency
Mercury Isotope Values in Shoreline Spiders Reveal the Transfer of Aquatic Mercury Sources to Terrestrial Food Webs

Supporting information for "Janssen SE, Kotalik CJ, Eagles-Smith CA, Beaubien GB, Hoffman JC, Peterson G, Mills MA, Walters DM. Mercury Isotope Values in Shoreline Spiders Reveal the Transfer of Aquatic Mercury Sources to Terrestrial Food Webs. Environ Sci Technol Lett. 2023 Sep 13;10(10):891-896. doi: 10.1021/acs.estlett.3c00450. PMID: 37840816; PMCID: PMC10569030.". 

This dataset is associated with the following publication:
Janssen, S., C. Kotalik, C. Eagles-Smith, G. Beaubien, J. Hoffman, G. Peterson, M. Mills, and D. Walters. Mercury Isotope Values in Shoreline Spiders Reveal the Transfer of Aquatic Mercury Sources to Terrestrial Food Webs.   Environmental Science & Technology Letters. American Chemical Society, Washington, DC, USA, 10(10): 891-896, (2023).

Tags: bioaccumulation, bioindicator, mercury, mercury-stable-isotopes, spiders
Organization: U.S. Environmental Protection Agency
Cross species extrapolation of the disruption of thyroid hormone synthesis by oxyfluorfen using in vitro data, physiologically based pharmacokinetic (PBPK), and thyroid hormone kinetics models

How to access data for "Decrane R, Stoker T, Murr A, Ford J, El-Masri H. Cross species extrapolation of the disruption of thyroid hormone synthesis by oxyfluorfen using in vitro data, physiologically based pharmacokinetic (PBPK), and thyroid hormone kinetics models. Curr Res Toxicol. 2023 Nov 23;5:100138. doi: 10.1016/j.crtox.2023.100138. PMID: 38074188; PMCID: PMC10697989.". This dataset is not publicly accessible because: N/A. It can be accessed through the following means: Data will be made available on request from Hisham El-Masri (el-masri.hisham@epa.gov). Format: N/A. 

This dataset is associated with the following publication:
Decrane, R., T. Stoker, A. Murr, J. Ford, and H. El-Masri. Cross species extrapolation of the disruption of thyroid hormone synthesis by oxyfluorfen using in vitro data, physiologically based pharmacokinetic (PBPK), and thyroid hormone kinetics models.   Current Research in Toxicology. Elsevier B.V., Amsterdam,  NETHERLANDS, 5: 100138, (2023).

Tags: biological-modeling, oxyfluorfen, pbpk, thyroid
Organization: U.S. Environmental Protection Agency
Supplemental Information for Dietary uptake of highly hydrophobic chemicals by rainbow trout

Detailed data and analysis supporting manuscript Dietary uptake of highly hydrophobic chemicals by rainbow trout. 

This dataset is associated with the following publication:
Burkhard, L., T. Lahren, K. Hanson, A. Kasparek, and D. Mount. Dietary Uptake of Highly Hydrophobic Chemicals by Rainbow Trout (Oncorhynchus Mykiss).   ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY. Springer, New York, NY, USA, 85(4): 390-403, (2023).

Tags: bioaccumulation, fish, hydrophobicity, kow
Organization: U.S. Environmental Protection Agency