AndreaBozzo/ceres-open-data-index huggingface dataset:
ES60 Water Column Sonar Data Collected During EBS13AL

The Resource Assessment and Conservation Engineering (RACE) Division of the National Oceanic and Atmospheric Administrationâs (NOAA) Alaska Fisheries Science Center (AFSC) conducted the Eastern Bering Sea Continental Shelf Bottom Trawl Survey of Groundfish and Invertebrate Resources from June 3, 2013 to August 9, 2013. This cruise continued the annual series of eastern Bering Sea crab and groundfish stock assessment surveys, which began in 1971. The survey covered the Bering Sea shelf between the depths of 20 and 200 m from Bristol Bay northward to latitude 62Â° N.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, bering sea, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
ES60 Water Column Sonar Data Collected During EBS19VA

The Resource Assessment and Conservation Engineering (RACE) Division of the National Oceanic and Atmospheric Administrationâs (NOAA) Alaska Fisheries Science Center (AFSC) conducted the Eastern Bering Sea Continental Shelf Bottom Trawl Survey of Groundfish and Invertebrate Resources in 2019. This cruise continued the annual series of eastern Bering Sea crab and groundfish stock assessment surveys, which began in 1971. The survey covered the Bering Sea shelf between the depths of 20 and 200 m from Bristol Bay northward to latitude 62Â° N.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, bering sea, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
ES60 Water Column Sonar Data Collected During EBS18VA

The Resource Assessment and Conservation Engineering (RACE) Division of the National Oceanic and Atmospheric Administrationâs (NOAA) Alaska Fisheries Science Center (AFSC) conducted the Eastern Bering Sea Continental Shelf Bottom Trawl Survey of Groundfish and Invertebrate Resources from May 30, 2018 to August 08, 2018. This cruise continued the annual series of eastern Bering Sea crab and groundfish stock assessment surveys, which began in 1971. The survey covered the Bering Sea shelf between the depths of 20 and 200 m from Bristol Bay northward to latitude 62Â° N.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, bering sea, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
ES60 Water Column Sonar Data Collected During EBS11AL

The Resource Assessment and Conservation Engineering (RACE) Division of the National Oceanic and Atmospheric Administrationâs (NOAA) Alaska Fisheries Science Center (AFSC) conducted the Eastern Bering Sea Continental Shelf Bottom Trawl Survey of Groundfish and Invertebrate Resources from May to August, 2011. This cruise continued the annual series of eastern Bering Sea crab and groundfish stock assessment surveys, which began in 1971. The survey covered the Bering Sea shelf between the depths of 20 and 200 m from Bristol Bay north to latitude 62Â° N.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, bering sea, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
ES60 Water Column Sonar Data Collected During EBS13AK

The Resource Assessment and Conservation Engineering (RACE) Division of the National Oceanic and Atmospheric Administrationâs (NOAA) Alaska Fisheries Science Center (AFSC) conducted the Eastern Bering Sea Continental Shelf Bottom Trawl Survey of Groundfish and Invertebrate Resources from June 3, 2013 to August 9, 2013. This cruise continued the annual series of eastern Bering Sea crab and groundfish stock assessment surveys, which began in 1971. The survey covered the Bering Sea shelf between the depths of 20 and 200 m from Bristol Bay northward to latitude 62Â° N.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, bering sea, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
ES60 Water Column Sonar Data Collected During EBS16VA

The Resource Assessment and Conservation Engineering (RACE) Division of the National Oceanic and Atmospheric Administrationâs (NOAA) Alaska Fisheries Science Center (AFSC) conducted the Eastern Bering Sea Continental Shelf Bottom Trawl Survey of Groundfish and Invertebrate Resources from May 26, 2016 to July 30, 2016. This cruise continued the annual series of eastern Bering Sea crab and groundfish stock assessment surveys, which began in 1971. The survey covered the Bering Sea shelf between the depths of 20 and 200 m from Bristol Bay northward to latitude 62Â° N.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, bering sea, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NRSA 2013-2014 ARG Dataset

ARG, intI1, fecal indicator bacteria PCR data. 

This dataset is associated with the following publication:
Keely, S., N. Brinkman, E. Wheaton, M. Jahne, S. Siefring, M. Varma, R. Hill, S. Leibowitz, R. Martin, J. Garland, and R. Haugland. Geospatial Patterns of Antimicrobial Resistance Genes in the US EPA National Rivers and Streams Assessment Survey.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 56(21): 14960–14971, (2022).

Tags: antimicrobial-resistance, nrsa, rivers, streams
Organization: U.S. Environmental Protection Agency
Measuring and Modeling Diel Oxygen Dynamics in a Shallow Hypereutrophic Estuary: Implications of Low Oxygen Exposure on Aquatic Life

This dataset provides model output and post-processed analysis of model data used in the  manuscript: "Measuring and Modeling Diel Oxygen Dynamics in a Shallow Hypereutrophic Estuary: Implications of Low Oxygen Exposure on Aquatic Life." Post-processed data are available for each figure or categorical analysis as described in the filename. All relevant metadata and descriptive headers are provided within each data file. 

Tags: diel-cycling, hypoxia, modeling, nitrogen-and-co-pollutants
Organization: U.S. Environmental Protection Agency
BEA Interactive Data Application

BEA has an updated interactive data application to make it easier to access and use our statistics. The application provides a common look and feel for users accessing national, international, regional or industry statistics; makes the data easier to print, save and export; makes the charting features more robust and visually appealing; and makes the data easier to share with others via a variety of tools.

Tags: annual-industry-accounts, balance-of-payments, benchmark-input-output-accounts, consumer-spending, corporate-profits, direct-investment-and-multinational-companies, economic-information-for-coastal-areas, fixed-assets, gdp, gdp-by-industry, gdp-by-state-and-metropolitan-area, input-output-accounts, interactive-tables, international-investment-position, international-services, personal-income-and-outlays, rims-ii-regional-input-output-multipliers, state-and-local-area-personal-income, trade-in-goods-and-services, underlying-detail
Organization: Department of Commerce
Data for The pathway of aerosol direct effects impact on secondary inorganic aerosol formation

Our results show that ADEs through the photolysis pathway inhibit sulfate formation during winter in the JJJ region and promote sulfate formation in July. The differences are attributed to the alteration of effective actinic flux affected by single-scattering albedo (SSA). ADEs through the dynamics pathway act as an equally or even more important route compared with the photolysis pathway in affecting secondary aerosol concentration in both summer and winter. ADEs through dynamics traps formed sulfate within the planetary boundary layer (PBL) which increases sulfate concentration in winter. Meanwhile, the impact of ADEs through dynamics is mainly reflected in the increase of gaseous-precursor concentrations within the PBL which enhances secondary aerosol formation in summer. For nitrate, reduced upward transport of precursors restrains the formation at high altitude and eventually lowers the nitrate concentration within the PBL in winter, while such weakened vertical transport of precursors increases nitrate concentration within the PBL in summer, since nitrate is mainly formed near the surface ground. 

This dataset is associated with the following publication:
Wang, J., J. Xing, S. Wang, R. Mathur, J. Wang, Y. Zhang, C. Liu, J. Pleim, D. Ding, X. Chang, J. Jiang, P. Zhao, S. Kumar Sahu, Y. Jin, C. Wong, and J. Hao. The pathway of impacts of aerosol direct effects on secondary inorganic aerosol formation.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 22(8): 5147–5156, (2022).

Tags: air-pollution
Organization: U.S. Environmental Protection Agency
NYC STEW-MAP Staten Island organizations' website hyperlink webscrape

The data represent web-scraping of hyperlinks from a selection of environmental stewardship organizations that were identified in the 2017 NYC Stewardship Mapping and Assessment Project (STEW-MAP) (USDA 2017). There are two data sets: 1) the original scrape containing all hyperlinks within the websites and associated attribute values (see "README" file); 2) a cleaned and reduced dataset formatted for network analysis. 

For dataset 1: Organizations were selected from from the 2017 NYC Stewardship Mapping and Assessment Project (STEW-MAP) (USDA 2017), a publicly available, spatial data set about environmental stewardship organizations working in New York City, USA (N = 719). To create a smaller and more manageable sample to analyze,  all organizations that intersected (i.e., worked entirely within or overlapped) the NYC borough of Staten Island were selected for a geographically bounded sample. Only organizations with working websites and that the web scraper could access were retained for the study (n = 78). The websites were scraped between 09 and 17 June 2020 to a maximum search depth of ten using the snaWeb package (version 1.0.1, Stockton 2020) in the R computational language environment (R Core Team 2020).

For dataset 2: The complete scrape results were cleaned, reduced, and formatted as a standard edge-array (node1, node2, edge attribute) for network analysis. See "READ ME" file for further details. 

References:
R Core Team. (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. Version 4.0.3.

Stockton, T. (2020). snaWeb Package: An R package for finding and building social networks for a website, version 1.0.1.

USDA Forest Service. (2017). Stewardship Mapping and Assessment Project (STEW-MAP). New York City Data Set. Available online at https://www.nrs.fs.fed.us/STEW-MAP/data/. 

This dataset is associated with the following publication:
Sayles, J., R. Furey, and M. Ten Brink. How deep to dig: effects of web-scraping search depth on hyperlink network analysis of environmental stewardship organizations.   Applied Network Science. Springer Nature, New York, NY,  7: 36, (2022).

Tags: decision-support-tools, environmental-governance, environmental-stewardship, hyperlink-networks, sna, social-network-analysis, web-scraping
Organization: U.S. Environmental Protection Agency
Evaluating the Mouse Model for Estimation of Arsenic Bioavailability: Comparison of Estimates of Absolute Bioavailability of Inorganic Arsenic in Mouse, Humans, and Other Species

Mouse assays. 

This dataset is associated with the following publication:
Diamond, G., K. Bradham, and D. Thomas. Evaluating the Mouse Model for Estimation of Arsenic Bioavailability: Comparison of Estimates of Absolute Bioavailability of Inorganic Arsenic in Mouse, Humans, and Other Species.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH - PART A:  CURRENT ISSUES. Taylor & Francis, Inc., Philadelphia, PA, USA, 85(19): 815-825, (2022).

Tags: arsenic, bioavailability, human, mouse, pharmacokinetics
Organization: U.S. Environmental Protection Agency
2022 - Efficacy data for non-spore-forming biological agents in soil

Lab-scale testing was used to generate efficacy data, for three non-spore-forming biologicals (VEE, YP, BP), in three different soil types, and three different decontaminants. 

This dataset is associated with the following publication:
Richter, W., M. Sunderman, M.L. Fulton, Z. Willenberg, S. Serre, L. Oudejans, J. Wood, and M. Calfee. Decontamination Efficacy of Common Liquid Disinfectants Against Non-Spore-Forming Biological Agents in Soil Matrices.   JOURNAL OF APPLIED MICROBIOLOGY. Blackwell Publishing, Malden, MA, USA, 133(6): 3659-3668, (2022).

Tags: biological-agent-decontamination, burkholderia-pseudomallei, indoor-outdoor-decontamination, soil-decontamination, yersinia-pestis
Organization: U.S. Environmental Protection Agency
Sarajevo PM2.5 Data from Collocated FEM Monitors

The datasets related to the figures in the journal article and are derived from the two collocated Federal Equivalent Method (FEM) monitors that operated side-by-side in Sarajevo, Bosnia and Herzegovina for a 15-month timeframe. 

This dataset is associated with the following publication:
Hagler, G., T. Hanley, B. Hassett-Sipple, R. Vanderpool, M. Smith, J. Wilbur, T. Wilbur, T. Oliver, D. Shand, V. Vidacek, C. Johnson, R. Allen, and C. D'Angelo. Evaluation of two collocated federal equivalent method PM2.5 instruments over a wide range of concentrations in Sarajevo, Bosnia and Herzegovina.   Atmospheric Pollution Research. Turkish National Committee for Air Pollution Research and Control, Izmir,  TURKEY, 13(4): 101374, (2022).

Tags: air-quality, bosnia, fine-particulate-matter, pm2-5, sarajevo
Organization: U.S. Environmental Protection Agency
Temperature profiles from mechanical bathythermograph (MBT) casts from combatant ships of the U.S. Navy in support of the Fleet Observations of Oceanographic Data (FLOOD) program from 1943-05-12 to 1996-03-10

MBT data were collected from ships in the U.S. Navy combatant fleet in support of the Fleet Observations of Oceanographic Data (FLOOD) program. These platforms were equipped and staffed to observe weather and sea conditions. Data were collected by the U.S. Navy from 12 May 1943 to 10 March 1996.

The Fleet Observations of Oceanographic Data (FLOOD) program was a program whereby combatant ships of the U.S. Navy were equipped with an instrument package for collection of oceanographic and hydrographic data. The objective is to obtain broader geographic coverage of information than can be obtained with the Navy's regular fleet of survey ships. The program also provides for the collection of data on an opportunity basis in localities where the immediate needs of the Navy do not warrant a full-scale survey, but where data can contribute significantly to future requirements.

Data were processed by NODC to the NODC standard Universal Bathythermograph Output (UBT) format. The UBT file format is used for temperature-depth profile data obtained using the mechanical bathythermograph (MBT) instrument. The maximum depth of MBT observations is approximately 285 m. Therefore, MBT data are useful only in studying the thermal structure of the upper layers of the ocean. Cruise information, date, position, and time are reported for each observation. The data record comprises pairs of temperature-depth values. Temperature data in this file are recorded at uniform 5 m depth intervals.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
GHRSST Level 4 OSTIA Global Foundation Sea Surface Temperature Analysis (GDS versions 1 and 2)

A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the UK Met Office using optimal interpolation (OI) on a global 0.054 degree grid. The Operational Sea Surface Temperature and Sea Ice Analysis (OSTIA) analysis uses satellite data from sensors that include the Advanced Very High Resolution Radiometer (AVHRR), the Spinning Enhanced Visible and Infrared Imager (SEVIRI), the Geostationary Operational Environmental Satellite (GOES) imager, the Infrared Atmospheric Sounding Interferometer (IASI), the Tropical Rainfall Measuring Mission Microwave Imager (TMI) and in situ data from ships, drifting and moored buoys. This analysis was specifically produced to be used as a lower boundary condition in Numerical Weather Prediction (NWP) models. This dataset adheres to the GHRSST Data Processing Specification (GDS) version 2 format specifications.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
The contribution of the neuroendocrine system to adaption after repeated daily ozone exposure in rats

we hypothesized that ozone-adaptation is linked to diminution of neuroendocrine stress-axes activation and glucocorticoid levels. Male Wistar-Kyoto-rats (12-week-old) were injected with vehicle or a therapeutically-relevant dexamethasone dose (0.01-mg/kg/day; intraperitoneal) for 1-month to determine if suppression of glucocorticoid signaling was linked to adaptation. Vehicle- and dexamethasone-treated rats were exposed to air or 0.8-ppm ozone, 4 hours/dayx2 or 4 days to assess the impacts of acute exposure and adaptation, respectively. 

This dataset is associated with the following publication:
Heinriquez, A., S. Snow, J. Dye, M.C. Schladweiler, D. Alewel, C. Miller, and U. Kodavanti. The contribution of the neuroendocrine system to adaption after repeated daily ozone exposure in rats.   TOXICOLOGY AND APPLIED PHARMACOLOGY. Academic Press Incorporated, Orlando, FL, USA, 447(116085): 1, (2022).

Tags: adaptation, neuroendocrine, nitrogen-and-co-pollutants, ozone, stress-hormones
Organization: U.S. Environmental Protection Agency
Metadata for Carlisle et al. A Web-Based Tool for Assessing the Condition of Benthic Diatom Assemblages in Streams and Rivers of the Conterminous United States

R code and data files used to identify diatom metrics that are robust to taxonomic inconsistency. The R code run a goodness of fit analysis to determine how much variation is explained by analyst in a diatom dataset that has been harmonized for taxonomic consistency compared to the original raw dataset. 

This dataset is associated with the following publication:
Carlisle, D., S. Spaulding, M. Tyree, N. Schulte, S. Lee, R. Mitchell, and A. Pollard. A web-based tool for assessing the condition of benthic diatom assemblages in streams and rivers of the conterminous United States manuscript.   ECOLOGICAL INDICATORS. Elsevier Science Ltd, New York, NY, USA, 135: 1-13, (2022).

Tags: biological-condition, diatoms, multi-metric-index, rivers, streams
Organization: U.S. Environmental Protection Agency
SciHub_CoV_012422

Data describes percent losses of SARS-CoV-2 from wastewater.  Also details recovery of endogenous SARS-CoV-2 from wastewater using two volumetrically different methods. 

This dataset is associated with the following publication:
McMinn, B., A. Korajkic, A. Pemberton, J. Kelleher, W. Ahmed, and E. Villegas. Assessment of two volumetrically different concentration approaches to improve sensitivities for SARS-CoV-2 detection during wastewater monitoring.   JOURNAL OF VIROLOGICAL METHODS. Elsevier Science Ltd, New York, NY, USA, 311: 114645, (2023).

Tags: hollow-fiber-ultra-filter, infectious, rt-qpcr, sars-cov-2, wastewater
Organization: U.S. Environmental Protection Agency
N-recyle-dataset

The data contained in the worksheet provides the quantity data of Cyanobacterial 16S sequences, qPCR and water quality parameters. 

This dataset is associated with the following publication:
Li, H., T. Miller, J. Lu, and R. Goel. Nitrogen fixation contribution to nitrogen cycling during cyanobacterial blooms in Utah Lake.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 302: 134784, (2022).

Tags: ammonium-nitrogen, cyanobacteria, nutrient-reduction, utah
Organization: U.S. Environmental Protection Agency
Data compilation  Carbon Limitation

Data used to generate statistical analysis in the manuscript "Carbon limitation in response to nutrient loading in an eelgrass mesocosm: influence of water residence time on eutrophication expression" by Kaldy, Brown and Pacella. 

This dataset is associated with the following publication:
Kaldy, J., C. Brown, and S. Pacella. Carbon limitation in response to nutrient loading in an eelgrass mesocosm: influence of water residence time..   MARINE ECOLOGY PROGRESS SERIES. Inter-Research, Luhe,  GERMANY, 689: 1-17, (2022).

Tags: basification, carbon-limitation, eutrophication, nutrient-loading, seagrass
Organization: U.S. Environmental Protection Agency
XCMS output from GC/MS-based profiling of amphibian livers exposed to pesticide, predation or both

Retention time and abundances from GC/MS analysis of amphibian livers exposed to pesticide, predation or combined stresses. 

This dataset is associated with the following publication:
Henderson, M., M.N. Snyder, D. Glinski, and T. Purucker. Differentiating metabolomic responses of amphibians to multiple stressors.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 838(3): 155666, (2022).

Tags: amphibians, environmental-stressors, metabolomics, multiple-stressors, pesticide-exposure, pesticides, predation-stress
Organization: U.S. Environmental Protection Agency