AndreaBozzo/ceres-open-data-index huggingface dataset:
NCCOS Assessment: Digitized histological slides for a collaborative project on Stony Coral Tissue Loss Disease (SCTLD) resistance and susceptibility in Orbicella faveolata, collected in Broward County and Florida Keys reefs between 2021-05-28 and 2022-03-19

This data is part of a multi-investigator, multi-disciplinary collaboration called the SCTLD resistance research consortium (RRC) investigating resistance and susceptibility among Orbicella faveolata populations off Broward and the Lower Florida Keys. These digitized histological slides include tissue biopsies from wild O. faveolata colonies from two regions (the Kristin Jacobs Coral Reef Ecosystem Conservation Area in Broward County, and Looe Key and Sand Key in the Florida Keys National Marine Sanctuary) and three resistance categories (âLow Resistanceâ, âMedium Resistanceâ, âHigh Resistanceâ). Each colony was sampled three times throughout the monitoring period to capture temporal differences in physiological processes: Period 1= late-May â mid-June, Period 2= mid-August â mid-September, Period 3= late-February â mid-March. All slides were stained with hematoxylin and eosin and scanned on a digital slide scanner to a maximum magnification of 40x. A subset of slides from Periods 1 and 2 were also stained with Movat's pentachrome stain. All images are in SVS format. This dataset only includes the raw histological slide collection and associated metadata from biopsied coral colonies. Results from the analysis of the histological slides will be available from partner labs in separate associated datasets.

Tags: 0h0n6c, 31618, 4163kn, 8dm68g, atlantic ocean, biosphere, biscayne bay, broward county, broward county (26n080w0006), caribbean sea, coral, coral condition, coral diseases, coral histology, coral mortality, coral pathology, corals, country/territory, digital slide scanner (40x) with easyscaninfinity software, digitized histology slides of diseased coral tissues, disease response, dry tortugas national park, earth science, field experiment, florida, florida keys (24n081w0007), florida keys national marine sanctuary, florida reef tract, florida reef tract (26n080w0007), fort lauderdale (26n080w0003), histology, invertebrates, kristin jacobâs coral reef ecosystem conservation area, long key (24n080w0017), looe key reef (24n081w0002), lower florida keys, marine biology, marine invertebrates, monroe county, n/a, nccos research data type, nccos research location, nccos research priority, nccos research topic, noaa coral reef conservation program, north atlantic ocean, ocean basin, oceanography, oceans, orbicella faveolata, region, regional ecosystem science, sand key (24n081w0012), sand key (25n080w0032), stony coral tissue loss disease (sctld), stressor impacts and mitigation, u.s. states and territories, united states of america, upper florida keys, use of âomics for coral restoration and disease intervention, use of âomics for coral restoration and disease intervention #31618, visual images, zoology
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Aquatic vegetation were photographed from aircraft from Florida Bay, Indian River (Florida), and the Coast of Massachusetts (NCEI Accession 0000411)

Aerial photographs were taken of the aquatic vegetation of Florida Bay, Indian River (Florida), and the Coast of Massachusetts. Photographs were scanned and geo-referenced for the purpose of mapping. Data is contained on a "DLT" tape and is stored "off-site" as a secure backup copy.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Zooplankton and other data from net casts from the COMMANDO and other platforms as part of Outer Continental Shelf Environmental Assessment Program (OCSEAP) from 20 May 1975 to 16 March 1979 (NCEI Accession 8200049)

Zooplankton and other data were collected from net casts from the COMMANDO and other platforms from 20 May 1975 to 16 March 1979. Data were collected by the University of Washington (UW) and the National Marine Fisheries Service (NMFS) as part of the Outer Continental Shelf Environmental Assessment Program (OCSEAP). Data were processed by NODC to the NODC standard F124 Zooplankton Data format.

The F124 format is used for data from sampling and analysis of marine zooplankton. Information on zooplankton abundance, distribution, and productivity derived from these data support studies of marine populations and ecosystems. Data reported may include: cruise information, position, date, and time of sampling; bottom depth, sampling depths, temperature, and salinity; gear type, volume of water filtered, total dry and wet weight, and other data for total haul; and data for subsamples by species. Data on zooplankton catch by species may include subsample size, zooplankton concentration, life history code, and numbers of adults, juveniles, eggs, and larvae. Estimated density of holoplankton and meroplankton and data on ichthyoplankton may also be reported. A text record is available for comments. Note: there are two options for reporting subsample counts of individuals at different life history stages. If life history codes are used, only number of adults should be reported on that record. Additional separate records should then be used to report number of juveniles and so on. Alternatively, life history codes may not be used and number of adults, juveniles, and so entered in the proper fields of a single record.

An analog file for this accession is available.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Oceanographic profile data using bottle collected during CalCOFI cruises, North Pacific Ocean, 2017-01 to 2018-04 (NCEI Accession 0209356)

Bottle data collected during CalCOFI cruises 1701, 1704, 1708, 1711, 1802, and 1804, January 2017 - April 2018. The California Cooperative Oceanic Fisheries Investigations (CalCOFI) are a unique partnership of the California Department of Fish & Wildlife, NOAA Fisheries Service, and Scripps Institution of Oceanography. The organization was formed in 1949 to study the ecological aspects of the sardine population collapse off California. Today our focus has shifted to the study of the marine environment off the coast of California, the management of its living resources, and monitoring the indicators of El NiÃ±o and climate change. CalCOFI conducts quarterly cruises off southern & central California, collecting a suite of hydrographic and biological data on station and underway.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA South Carolina oyster mapping orthoimagery, collection subset 3 of 5, 2003-2005 (NCEI Accession 0084750)

This data set, 3 of 5 archived at the NODC, contains digital orthophotography. The data set presents information that represented conditions for the specified Digital Orthophoto Quarter Quads (DOQQ) regions of interest as specified by PhotoScience Task No. 01012C0053 for coastal areas of South Carolina. The project area was selected specifically to cover those sections of the South Carolina coastal critical zone where oysters had historically been mapped by SC Department of Natural Resources, Marine Division. Additional data from this collection is archived at the NODC under accession numbers 0084621, 0084749, 0084751, 0084752.

The extent of the DOQQs for the project area ranges from the Hilton Head area in the southern part of South Carolina to the Myrtle Beach area in the northern part of the state. The digital orthophotos in this series have a theoretical ground resolution of 0.25 meter. The digital orthophotos are 4-band in nature (red, green, blue, near infrared) and are delivered as flown in four-band .img file format with associated .png, .jpg, and indexing files. The four-band imagery is delivered in mosaics equaling one eighth of a DOQ. All data were captured during specific imaging windows per contract. The total DOQQ area is approximately 1,527 square miles.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Surface underway measurements of partial pressure of carbon dioxide (pCO2) in the Atlantic Ocean during the M/N Cap San Lorenzo Ships of Opportunity (SOOP) lines from 2018-06-24 to 2018-09-28 (NCEI Accession 0184277)

This dataset includes surface underway, chemical, meteorological and physical data collected from M/N Cap San Lorenzo in the Atlantic Ocean from 2018-06-24 to 2018-09-28. These data include barometric pressure, partial pressure of carbon dioxide - atmosphere, partial pressure of carbon dioxide - water, sea surface salinity and temperature. The instruments used to collect these data include Carbon dioxide (CO2) gas analyzer.

Tags: 65dk20180624, 65dk20180724, 65dk20180821, 65dk20180918, atlantic ocean, atm_pre, eq-tmp, eq_pre, fco2_wat, h2o, ocean carbon and acidification data system (ocads) project, oceanography, soop, sss, sst, surface underway, xco2_eq_air
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bathythermograph (MBT) data from BLAIR in the North Pacific Ocean from 1958-07-01 to 1960-01-22 (NCEI Accession 7500318)

This dataset includes bathythermograph (MBT) data from BLAIR in the North Pacific Ocean from 1958-07-01 to 1960-01-22.

Data has been processed by NODC to the NODC standard Bathythermograph (MBT) (C128) format.

The C128 format is used for temperature-depth profile data obtained using the mechanical bathythermograph (MBT) instrument. The maximum depth of MBT observations is approximately 285 m. Therefore, MBT data are useful only in studying the thermal structure of the upper layers of the ocean. Cruise information, date, position, and time are reported for each observation. The data record comprises pairs of temperature-depth values. Temperature data in this file are recorded at uniform 5 m depth intervals.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Ocean currents from lowered acoustic Doppler current profilers (LADCP), water temperature, salinity, and others taken by CTD of the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP) aboard the research vessel Roger Revelle, cruise RR2204, along WOCE-Lines P02 in the North Pacific from 2022-04-30 to 2022-06-10 (NCEI Accession 0289389)

This dataset contains the Lowered Acoustic Doppler Current Profile (LADCP) estimates of ocean currents and shear as well as water temperature, salinity, and others taken by CTD in a profile to deep waters from the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). A raw and a processed version are given in each dataset, both of which include ancillary data streams from CTD, ship navigation, and shipboard ADCP. The data were collected on R/V R.Revelle for cruise TN390 on World Ocean Circulation Experiment lines A22 from 2022-04-30 to 2022-06-10. This cruise is part of the NCEI collection for GO-SHIP LADCP.  The finalized datasets have been assembled and submitted to NCEI by the LADCP data management staff of University of Hawaii and the Lamont-Doherty Earth Observatory. The originators of each LADCP set are defined within the accession documentation.  Data files for the processed set are in ASCII text, PDF, and NetCDF.  Raw data are given in proprietary binary files and made available in case a user prefers to reprocess the set from âlevel-0â status.

Tags: 7d3mdd, current speed - north/south component (v) (measured), current speed - up/down component (w) (measured), hydrostatic pressure (measured), oceanography, â¢ current speed - east/west component (u)
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Oceanographic and meteorological data from various meteorological sensors and bottle/rosette/net taken from several Russian vessels in Caspian, Black and Azov Seas from 18 April, 1952 to 7 December, 2012 (NCEI Accession 0117731)

Cruises took place from 18 April 1952 to 7 December 2012 in Caspian, Black and Azov Seas. Various vessels were used to collect data in the open sea. Data collection activities were also carried out in the coastal zone from small boats. Oceanographic data were used for weather forecasts and monitoring the state of the biological resources of Caspian, Black and Azov Seas.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Oceanographic data from ships and buoys in the Northeast Pacific, Northwest Atlantic, Gulf of Alaska, and Southern Ocean collected as part of the Global Ocean Ecosystem Dynamics (GLOBEC) project from 1990 to 2004

This collection includes physical, biological, and chemical time series, profile, and other in situ oceanographic data from the Global Ocean Ecosystems Dynamics (GLOBEC) Northeast Pacific, Northwest Atlantic, and Southern Ocean programs. Numerous organizations collected these data from numerous ships, buoys and other observation stations, from 1990 to 2004.

Tags: al9801, al9806, al9808, al99-01, al99-04, al99-06, ar9806, ar9807, at721, dense water (nsf), en259, en262, en264, en266, en267 leg 2, en320, f6x2hr, georges bank, great south channel, hx201, hx203, hx205, hx208, hx211, hx214, hx215, hx216, hx217, hx218, hx219, hx223, hx225, hx226, hx228, hx230, hx231, hx234, hx237, hx238, hx239, hx241, hx242, hx243, hx244, hx246, hx247, hx248, hx252, hx253, hx254, hx257, hx258, hx262, hx263, hx268, mooring work, nbp01-03, nbp01-04, nh0307a, north america, north atlantic, oc301, oc303, oc317, oc319, oc322, oc336, oc341, oceanography, sj9503, sj9505, sj9507, sj9508, united states, w0002a, w0004b, w0007a, w0009a, w0101c, w0103b, w0107a, w0109a, w0111b, w0202a, w0204a, w0207a, w0212a, w0302a, w0304a, w0309b, w0408d, w0409, w0409a, w9707b, w9709b, w9711c, w9801b, w9804a, w9808a, w9809a, w9811a, w9902a, w9904b, w9907a, w9909c, w9911a, yk869u
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Water temperature profiles from XBT profiles collected in the Indian Ocean, South Pacific Ocean, and other waters around Australia between 2018-02-01 to 2019-03-06 (NCEI Accession 0188263)

This dataset contains oceanographic water temperature profiles collected from XBTs aboard the platforms ANL Elaroo, Capitaine Quiros, HMB Endeavour, Josephine Maersk, L'Astrolabe, and Shengking in the Indian Ocean, South Pacific Ocean, Tasman Sea, and Coral Sea from 2018-02-01 to 2019-03-06. These data were collected by the Commonwealth Scientific and Industrial Research Organization (CSIRO) as part of the JCOMM Ship of Opportunity Programme and submitted by Rebecca Cowley of CSIRO as part of the Global Temperature and Salinity Profile Programme (GTSPP).

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Temperature and pressure profile data collected using moored buoy from the Atlantic Ocean in part of the International Decade of Ocean Exploration / Mid-Ocean Dynamics Experiment (IDOE/MODE) project from 1974-07-28 to 1976-01-26 (NCEI Accession 7501005)

Temperature and pressure profile data were collected using moored buoy from the Atlantic Ocean from July 28, 1974 to January 1, 1976. Data were submitted by Massachusetts Institute of Technology; Department of Geology and Geophysics in part of the International Decade of Ocean Exploration/ Mid-Ocean Dynamics Experiment (IDOE/MODE) project.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Temperature, salinity and other variables collected from discrete sample and profile observations using CTD, bottle and other instruments from the TYRO in the Arctic Ocean and Beaufort Sea from 1996-09-13 to 1996-10-28 (NCEI Accession 0116717)

This dataset includes chemical, discrete sample, physical and profile data collected from TYRO in the Arctic Ocean and Beaufort Sea from 1996-09-13 to 1996-10-28 and retrieved during cruise SCICEX_33PY19960913. These data include AMMONIUM (NH4), CHLOROFLUOROCARBON-11 (CFC-11), CHLOROFLUOROCARBON-113 (CFC-113), DISSOLVED OXYGEN, HELIUM, HYDROSTATIC PRESSURE, NITRATE, NITRITE, PHOSPHATE, Potential temperature (theta), SALINITY, SILICATE, Tritium (Hydrogen isotope) and WATER TEMPERATURE. The instruments used to collect these data include CTD and bottle. These data were collected by Peter Schlosser and William M. Smethie Jr. of Lamont-Doherty Earth Observatory and Thomas S. Hopkins of North Carolina State University as part of the SCICEX_33PY19960913 dataset.

The International CLIVAR Global Ocean Carbon and Repeat Hydrography Program carries out a systematic and global re-occupation of select WOCE/JGOFS hydrographic sections to quantify changes in storage and transport of heat, fresh water, carbon dioxide (CO2), and related parameters.

Tags: 33py19960913, ammoni, arctic ocean, cfc-11, cfc113, ctdsal, ctdtmp, discrete measurement, helium, nitrat, nitrit, ocean carbon and acidification data system (ocads) project, oceanography, oxygen, phspht, profile, scicex, silcat, theta, tritum
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NODC Standard Product: Korea Oceanographic Database (KOD)

This collection contains the Korea Oceanographic Database (KOD). This database was developed at the National Oceanic and Atmospheric Administration's (NOAA) National Oceanographic Data Center (NODC; now National Centers for Environmental Information (NCEI)) using historical data sets acquired from the National Fisheries Research Development Institute (NFRDI; now National Institute of Fisheries Science (NIFS)) in South Korea through a Joint Project Agreement.

The database contains physical, meteorological, and biogeochemical surface and profile data collected from various platforms in the East China Sea, Yellow Sea, and Sea of Japan (East Sea), from 1905-01-12 to 2008-09-30. NCEI decommissioned the KOD on December 31, 2025 with no plans for further updates. Upon termination, the underlying data will be available from this collection. Comments and questions may be sent to: ncei.info@noaa.gov

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Partial pressure (or fugacity) of carbon dioxide, water temperature and salinity collected from surface underway observations during the yacht AmberSail on Volvo Ocean 65 (VO65) race cruises in the North Atlantic Ocean, North Sea, English Channel, Baltic Sea and Mediterranean Sea from 2021-05-09 to 2021-06-16 (NCEI Accession 0245563)

This dataset includes surface underway data collected during the yacht AmberSail on Volvo Ocean 65 (VO65) race cruises in the North Atlantic Ocean, North Sea, English Channel, Baltic Sea and Mediterranean Sea from 2021-05-09 to 2021-06-16. These data include partial pressure (or fugacity) of carbon dioxide in the water, sea surface salinity and sea surface temperature. The instruments used to collect these data include carbon dioxide (CO2) gas analyzer, flat membrane equilibrator for autonomous carbon dioxide (CO2) measurement.

Tags: 06mq20210509, ambersail, baltic sea, english channel, mediterranean sea, north atlantic ocean, north sea, ocean carbon and acidification data system (ocads) project, oceanography, ship of opportunity program (soop), soop, sss, sst_c, surface underway, the ocean race europe - oceanographic data collection campaign, volvo ocean 65 (vo65), vos, xco2
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Salinity, dissolved oxygen, water temperature, and pressure data collected from moored CTDs in Mobile Bay from 2016-07-12 to 2016-08-02 (NCEI Accession 0188979)

Three water quality stations collected salinity, temperature, dissolved oxygen, and pressure data in Mobile Bay from 7/12/16 to 8/2/16.  These data files are archived as netcdf format.

Tags: j9743y, mobile bay, oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Sea level data collected from tide gauge stations in the South Pacific Ocean from 2009-06-13 to 2021-01-28 (NCEI Accession 0244182)

This data file provides a validated and correctly time-stamped version of the 2009-2021 sea-level records of the five following tide stations in French Polynesia: Vairao (Tahiti-Iti), Mangareva (Gambier Archipelago), Tubuai (Austral Archipelago), Makemo and Rangiroa (Tuamotu Archipelago). The time sampling is one or two minutes, depending on the tide gauge. These data can be found in other databases, including IOC database, but we found that 16.7 % of the timestamps in these databases are incorrect. In addition, outliers found in the raw data were flagged by comparison with a preliminary tide model.

Tags: anpm5b, l43xgj, obemap, oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bathythermograph (XBT) data from NOAA Ship DAVIDSON in the Coastal Waters of Southeast Alaska and British Columbia and North Pacific Ocean from 1986-08-10 to 1986-11-19 (NCEI Accession 8700001)

This dataset includes bathythermograph (XBT) data from NOAA Ship DAVIDSON in the Coastal Waters of Southeast Alaska and British Columbia and North Pacific Ocean from 1986-08-10 to 1986-11-19.

Data has been processed by NODC to the NODC standard Bathythermograph (XBT) (C116) format.

The C116/C118 format contains temperature-depth profile data obtained using expendable bathythermograph (XBT) instruments. Cruise information, position, date and time were reported for each observation. The data record was comprised of pairs of temperature-depth values. Unlike the MBT Data File, in which temperature values were recorded at uniform 5 m intervals, the XBT data files contained temperature values at non-uniform depths. These depths were recorded at the minimum number of points ("inflection points") required to accurately define the temperature curve. Standard XBTs can obtain profiles to depths of either 450 or 760 m. With special instruments, measurements can be obtained to 1830 m. Prior to July 1994, XBT data were routinely processed to one of these standard types. XBT data are now processed and loaded directly in to the NODC Ocean Profile Data Base (OPDB). Historic data from these two data types were loaded into the OPDB.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bathythermograph (XBT) data from NOAA Ship Discoverer in the Gulf of Alaska and North Pacific Ocean from 1980-03-27 to 1980-03-31 (NCEI Accession 8000308)

This dataset includes bathythermograph (XBT) data from NOAA Ship Discoverer in the Gulf of Alaska and North Pacific Ocean from 1980-03-27 to 1980-03-31.

Data has been processed by NODC to the NODC standard Bathythermograph (XBT) (C116) format.

The C116/C118 format contains temperature-depth profile data obtained using expendable bathythermograph (XBT) instruments. Cruise information, position, date and time were reported for each observation. The data record was comprised of pairs of temperature-depth values. Unlike the MBT Data File, in which temperature values were recorded at uniform 5 m intervals, the XBT data files contained temperature values at non-uniform depths. These depths were recorded at the minimum number of points ("inflection points") required to accurately define the temperature curve. Standard XBTs can obtain profiles to depths of either 450 or 760 m. With special instruments, measurements can be obtained to 1830 m. Prior to July 1994, XBT data were routinely processed to one of these standard types. XBT data are now processed and loaded directly in to the NODC Ocean Profile Data Base (OPDB). Historic data from these two data types were loaded into the OPDB.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce