AndreaBozzo/ceres-open-data-index huggingface dataset:
Demand Response Across the Continental US for 2006

This project estimates hourly demand response availability across the continental U.S. for the year 2006. The resulting data set is disaggregated by balancing authority area, end use, and grid application. End uses include 14 categories across residential, commercial, industrial and municipal sectors. Grid applications include the 5 bulk power system services of regulation reserve, flexibility (or ramping) reserve, contingency reserve, energy, and capacity. Based on the physical requirements of the various bulk power system services and the estimated end use electric load shapes, potential availability of demand response is calculated and provided as a series of csv files.

Tags: building-demand, commercial, demand, demand-response, electric-demand, electric-load, end-use, energy, energy-demand, grid, grid-applications, industrial, load, power, residential, smart-grid
Organization: Department of Energy
NREL RSF Energy Model 2011

Modern buildings are complex energy systems that must be controlled for energy efficiency. The Research Support Facility (RSF) at the National Renewable Energy Laboratory (NREL) has hundreds of controllers -- computers that communicate with the building's various control systems -- to control the building based on tens of thousands of variables and sensor points. These control strategies were designed for the RSF's systems to efficiently support research activities. Many events that affect energy use cannot be reliably predicted, but certain decisions (such as control strategies) must be made ahead of time. NREL researchers modeled the RSF systems to predict how they might perform. They then monitor these systems to understand how they are actually performing and reacting to the dynamic conditions of weather, occupancy, and maintenance.

This submission includes the Energy Model from the RSF Systems Model. Comparing actual performance (metered) with expected performance (modeled) is key to understand corrective actions to ensure performance as originally intended. The Energy Model in this submission was made to model energy usage in the RSF and was compared to actual metered data to verify the model.

Measured data and Weather data related to the RSF Systems Model can be found in the "Related Datasets" section of this submission.

Tags: 2011, building, building-energy, building-energy-efficiency, building-systems, buildings, colorado, consumption, data, electricity, energy, energy-analysis, energy-conservation, energy-efficiency, energy-modeling, golden, mathematics-and-computing-research, model, nrel, research-support-facility, resoureces, rsf, utilization
Organization: Department of Energy
Effects-based monitoring of bioactive compounds associated with municipal wastewater treatment plant effluent discharge to the South Platte River, Colorado, USA

The datafile contains data associated with analytical chemistry, fish gene expression, in vitro bioassays, chemical prioritization, and Attagene data for surface water monitoring and caged fish studies on the South Platte River (Colorado, USA) in 2018 and 2019. 

This dataset is associated with the following publication:
Cavallin, J., J. Beihoffer, B. Blackwell, A. Cole, D. Ekman, R. Hofer, A. Jastrow, J. Kinsey, K. Keteles, E. Maloney, J. Parman, D. Winkelman, and D. Villeneuve. Effects-based monitoring of bioactive compounds associated with municipal wastewater treatment plant effluent discharge to the South Platte River, Colorado, USA.   ENVIRONMENTAL POLLUTION. Elsevier Science Ltd, New York, NY, USA, 289: 117928, (2021).

Tags: adverse-outcome-pathway, aquatic-ecosystems, ecotoxicology, endocrine-disruption, screening-and-prioritization
Organization: U.S. Environmental Protection Agency
Dataset for Effects of a 28-day early life stage exposure to carbaryl on fathead minnow long-term growth and reproduction

The US Environmental Protection Agency conducts ecological risk assessments with a battery of fish toxicity tests that include acute, early life stage, and reproduction tests.  While endpoints in these tests (survival, growth and reproduction) are conceptually related, because they are measured in separate exposures, the quantitative relationships between them are difficult to determine and largely ignored.  In the current test, fathead minnows (FHM) were exposed for 28 days to 1 mg/L or 2 mg/L carbaryl, a well-studied carbamate insecticide, in early life stages and then reared in clean water until adulthood, when reproduction was assessed.  Also. weekly growth measurements were taken throughout the test to determine growth rates during and after exposure.  Growth curves derived from these measurements were then compared to the reproductive output.  The data indicate that carbaryl reduced growth rate only for a brief time early in the exposure.  However, this brief effect impacted overall growth into adulthood and lowered the reproductive output of exposed FHM.  The effect of a transient exposure early in life to carbaryl could have later population-level impacts by causing mortality, lowering growth rates, and reducing reproductive output. 

This dataset is associated with the following publication:
Flynn, K., S. Kadlec, V. Kurker, and M. Etterson. Effects of a 28-day early life stage exposure to carbaryl on fathead minnow long-term growth and reproduction.   AQUATIC TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 242: 106018, (2022).

Tags: aquatic-toxicity, carbaryl, ecological-model, growth, pesticides
Organization: U.S. Environmental Protection Agency
Optimization of Human Neural Progenitor Cells for an Imaging-Based High-Throughput Phenotypic Profiling Assay for Developmental Neurotoxicity Screening

Dataset for article ‘Optimization of Human Neural Progenitor Cells for an Imaging-Based High-Throughput Phenotypic Profiling Assay for Developmental Neurotoxicity Screening’ published 02/16/2022 in Neurotoxicology, a section of the journal Frontiers in Toxicology, part of the Special Research Topic: Methods and Protocols in Neurotoxicology. The zip data file contains 10 files; a 'Data for hNP1 Methods Paper' Word document, 7 Figure files in Excel, and 2 Table files in Excel. 

This dataset is associated with the following publication:
Culbreth, M., J. Nyffeler, C. Willis, and J. Harrill. Optimization of Human Neural Progenitor Cells for an Imaging-Based High-Throughput Phenotypic Profiling Assay for Developmental Neurotoxicity Screening (Frontiers in Toxicology).   Frontiers in Toxicology. Frontiers, Lausanne,  SWITZERLAND, 3: 803987, (2021).

Tags: computational-toxicology, developmental-neurotoxicology, high-throughput-phenotypic-profiling, human-derived-cells, method-development
Organization: U.S. Environmental Protection Agency
Paper 2 Method 200.8

Data is for the Paper 2 Method 200.8 update on M2+ interference correction approaches. 

This dataset is associated with the following publication:
Smith, S., R. Martin, N. Hanks, P. Creed, K. Kovalcik, R. Wilson, K. Kubachka, J. Brisbin, J. Landero Figueroa, and J. Creed. An evaluation of M2+ interference correction approaches associated with As and Se in ICP-MS using a multi-day dataset along with ICP-MS/MS/HR-ICP-MS based analysis and hierarchical modeling as a means of assessing bias in fortified drinking waters and single component matrices.   JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY. Royal Society of Chemistry, Cambridge,  UK, 37(4): 898-909, (2022).

Tags: icp-ms, interference, m2-corrections, rare-earth-elements
Organization: U.S. Environmental Protection Agency
ScienceHub Data for Mn_Stress McDaniel v1

Data used for SAS analysis for USV, ASR/PPI, MA, SA, and CMP. 

This dataset is associated with the following publication:
McDaniel, K., T. Beasley, W. Oshiro, M. Huffstickler, V. Moser, and D. Herr. Impacts of a perinatal exposure to manganese coupled with maternal stress in rats:  Tests of untrained behaviors..   NEUROTOXICOLOGY AND TERATOLOGY. Elsevier Science Ltd, New York, NY, USA, 91(107088): 1, (2022).

Tags: manganese, neurobehavioral-tests, perinatal-stress
Organization: U.S. Environmental Protection Agency
MAC Manuscript

Culture presence/absence of M. avium and M. intracellulare by sample
qPCR M. avium and M. intracellular detection and quatification by sample. 

This dataset is associated with the following publication:
Pfaller, S., D. King, J. Mistry, and M. Donohue. Occurrence Revisited - Mycobacterium avium and Mycobacterium intracellulare in Potable Water in the USA.   Applied Microbiology and Biotechnology. Springer, New York, NY, USA, 106: 2715–2727, (2022).

Tags: culture-method, mycobacterium-avium, mycobacterium-avium-complex, mycobacterium-intracelluare, qpcr-methods
Organization: U.S. Environmental Protection Agency
MagnusonMatthew_A-pk1b_dataset_20181121.xlsx

The dataset contains the raw data for the graphs in the paper. 

This dataset is associated with the following publication:
Smith, M., S. Stuntz, Y. Xing, M. Magnuson, R. Phillips, and W.F. Harper. Functional resilience of activated sludge exposed to Bacillus globigii and bacteriophage MS2.   Water and Environment Journal. John Wiley & Sons, Inc., Hoboken, NJ, USA, 35(3): 930-936, (2021).

Tags: bacillus-globigii, bacteriophage-ms2, biocontaminant, fluorescence, inhibition, respirometry
Organization: U.S. Environmental Protection Agency
Leveraging ancillary benefits from urban greenspace—a case study of St. Louis, MO

Testing in St. Louis, Missouri a framework for leveraging ancillary benefits while managing stormwater using greenspace. 

This dataset is associated with the following publication:
Jordan, P., F. Hoover, and M. Hopton. Leveraging ancillary benefits from urban greenspace—a case study of St. Louis, Missouri.   Urban Water Journal. Taylor & Francis Group, London,  UK, 19(3): 314-323, (2022).

Tags: ecosystem-services, framework, green-infrastructure, greenspace, scenario-planning, stormwater-management
Organization: U.S. Environmental Protection Agency
Trophic transfer efficiency in the Lake Superior food web: Assessing the impacts of non-native species

This data release includes tabular data files. The dataset consists of four input data tables (Appendices A1-A4) for a Lake Superior EcoPath with EcoSim (EwE; http://ecopath.org) model parameterized to the early 21st century using 2001-2016 collections. The data presented here are primarily intended to development a static ecosystem model representing a snapshot of Lake Superior circa 2005 when the bulk of information was collected. Input data were compiled from multiple federal, state, provincial, and tribal agencies, academic institutions, published reports, theses, and peer review journal articles. This dataset includes results from lake-wide Cooperative Science and Monitoring Initiative surveys (CSMI; CSMI 2020) of Lake Superior undertaken in 2005-06, 2011 and 2016. We provide results of three lake-wide acoustic surveys (2003-2006, 2011 and 2016) that provided biomass estimates (kg/ha) of pelagic prey (cisco, bloater, kiyi and rainbow smelt); the later two (2011 and 2016) were part of the larger CSMI efforts. Our inputs on fish rely heavily on data included in Isaac (2010) who used USGS bottom trawl samples. These trawl data had been included in a previously released data set (Great Lakes Science Center 2019). We include these samples in the current release because we made a QA/QC effort to verify that the results of Isaac (2010) could be reproduced. We found that biomass estimates were close to that reported by Isaac (2010) for most groups (see associated metadata record process step 8 for details), but not exact. We opted to use biomass estimates as reported in Isaac (2010) for four species because his production to biomass (P/B) we’re using in the EcoPath model are explicitly linked to the biomass estimates provided by Isaac (2010). Collectively, these data represent the best available estimates of lake-wide population characteristics (biomass, production, consumption, diet, harvest, etc.) across trophic levels from bacteria to sea lamprey. Readers interested in learning more details about this data compilation and balancing of this Lake Superior ecosystem model should read the associated manuscript (Matthias, et al.), which is noted in the metadata cross reference section. 

This dataset is associated with the following publication:
Matthias, B., T. Hrabik, J. Hoffman, O. Gorman, M. Seider, M. Sierszen, M. Vinson, D. Yule, and P. Yurista. Trophic transfer efficiency in the Lake Superior food web: Assessing the impacts of non-native species.   JOURNAL OF GREAT LAKES RESEARCH. International Association for Great Lakes Research, Ann Arbor, MI, USA, 47(4): 1146-1158, (2021).

Tags: 7087, ecosystem-function, food-web, trophic-transfer-efficiency
Organization: U.S. Environmental Protection Agency
Projected Temperature and Ozone Data for Ren et al. Bayesian Ensemble Manuscript

This dataset contains projected temperature and ozone data provided by
EPA's Office of Research and Development in support of the manuscript
"A Flexible Bayesian Ensemble Machine Learning Framework for Predicting
Local Ozone Concentrations," by Xiang Ren, Panos Georgopoulos, et al. 

This dataset is associated with the following publication:
Ren, X., Z. Mi, T. Cai, C. Nolte, and P. Georgopoulos. Flexible Bayesian Ensemble Machine Learning Framework for Predicting Local Ozone Concentrations.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 56(7): 3871-3883, (2022).

Tags: climate-change, environmental-justice, machine-learning, ozone-exposure
Organization: U.S. Environmental Protection Agency
Quantitative Chemical Proteomics Reveals Interspecies Variations on Binding Schemes of Liver Fatty Acid Binding Protein with Perfluorooctanesulfonate

Results from Quantitative Interspecies Thermal Shift Assay (QITSA) and molecular docking. 

This dataset is associated with the following publication:
Han, J., J.  Fu, J. Sun, D.R. Hall, D. Yang, D. Blatz, K. Houck, C. Ng, J. Doering, C. LaLone, and H. Peng. Quantitative Chemical Proteomics Reveals Interspecies Variations on Binding Schemes of L-FABP with Perfluorooctanesulfonate.   Nature Communications. Nature Publishing Group, London,  UK, 55(13): 9012-9023, (2021).

Tags: adverse-outcome-pathway, cross-species-extrapolation, ecotoxicology, honey-bee, networks, screening-and-prioritization
Organization: U.S. Environmental Protection Agency
Fathead minnow VTG gene and protein expression after EE2 exposure

For decades, induction of vitellogenin (VTG), a yolk precursor protein, in male fish has been utilized as an indicator of environmental exposure to estrogenic compounds. VTG has been measured by a variety of enzyme-linked immunosorbent assays (ELISAs). Recently, an ELISA targeting VTG from a variety of environmentally or regulatory relevant fish species was developed which detects VTG in serum, plasma, whole tissue homogenate and outer mucus coat (TECO Medical Group, Switzerland). Detection of VTG in mucus presents a non-invasive method of monitoring endocrine disruption. As the scientific community strives to reduce animal testing, this method could provide a reliable, minimally invasive sample for routine monitoring studies. The objective of this study was to characterize VTG  protein in male fathead minnow (Pimephales promelas) mucus compared with more conventional measures in plasma and mRNA isolated from liver. VTG expression changes have frequently been studied in fathead minnows exposed to the well-characterized endocrine disrupting compound, 17α-ethinylestradiol (EE2). To assess the intensity and duration of changes in mucus VTG concentrations, fathead minnows were exposed to EE2 for 7 days with a subsequent depuration period of 14 days. The exposure was conducted in a flow-through system to maintain a consistent concentration of EE2 at a nominal EC50 concentration of 2.5 ng/L and high concentration of 10 ng/L as a positive control. Mucus, plasma and liver were sampled at regular intervals throughout the study. Relative abundance of vtg mRNA  increased after 2 days of exposure and disappeared after 4 days of depuration. Vitellogenin protein expression increased after 2 days of exposure and remained elevated throughout the depuration period. The pattern of protein expression in mucus was the same as plasma indicating mucus can be used as a non-invasive sample for measuring VTG in fish. Sampling mucus allows researchers to collect more samples in less time during one sampling event without sacrificing animals. Additionally, the same population may be repeatedly sampled, which is potentially useful to monitor remediation efforts or for endangered species. 

This dataset is associated with the following publication:
See, M.J., D. Bencic, R. Flick, J. Lazorchak, and A. Biales. Characterization of vitellogenin concentration in male fathead minnow mucus compared to plasma, and liver mRNA.   AQUATIC TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 236: 113428, (2022).

Tags: fathead-minnows, vitellogenin-gene-and-protein
Organization: U.S. Environmental Protection Agency
USGS and EPA Background Study Dataset

This excel spreadsheets provide the USGS and EPA background dataset (climatic variables, pathogen detection results, geochemical analysis results, topological variables, and animal location data) for the data points as collected through the NASGLP project. There is also a metadata file to explain what each variable is and where the data was retrieved from.  There is also an Excel file with data that was excluded from the larger dataset (due to missing or incomplete data, etc). 

Tags: b-anthracis, gis, maxent, soil
Organization: U.S. Environmental Protection Agency
Data for "Evaluation of different techniques for plume height injection in air quality models"

This dataset contains the data for figures in the paper "An evaluation of empirical and statistically based smoke plume injection height parametrisations used within air quality models". Only figures 5,6,7,8,9,10,11,12,13 have data associated with them. 

This dataset is associated with the following publication:
Wilkins, J., G. Pouliot, T. Pierce, A. Soja, H. Choi, E. Gargulinski, R. Gilliam, J. Vukovich, and M. Landis. An evaluation of empirical and statistically based smoke plume injection height parametrisations used within air quality models.   International Journal of Wildland Fire. CSIRO Publishing, Collingwood Victoria,  AUSTRALIA, 31(2): 193-211, (2022).

Tags: air-quality-modeling, biomass-burning, cmaq, emissions, wildland-fire
Organization: U.S. Environmental Protection Agency
Code for Predicting MIEs from Gene Expression and Chemical Target Labels with Machine Learning (MIEML)

Modeling data and analysis scripts generated during the current study are available in the github repository: https://github.com/USEPA/CompTox-MIEML. RefChemDB is available for download as supplemental material from its original publication (PMID: 30570668). LINCS gene expression data are publicly available and accessible through the gene expression omnibus (GSE92742 and GSE70138) at https://www.ncbi.nlm.nih.gov/geo/ . 

This dataset is associated with the following publication:
Bundy, J., R. Judson, A. Williams, C. Grulke, I. Shah, and L. Everett. Predicting Molecular Initiating Events Using Chemical Target Annotations and Gene Expression.   BioData Mining. BioMed Central Ltd, London,  UK, issue}: 7, (2022).

Tags: binary-classification, chemical-safety-screening, high-throughput-transcriptomics, library-of-integrated-cellular-signatures, machine-learning, molecular-initiating-events
Organization: U.S. Environmental Protection Agency
Invasive Dreissena Mussel Coastal Transport From an Already Invaded Estuary to a Nearby Archipelago Detected in DNA and Zooplankton Surveys

This excel file contains the raw data for a publication concerning Dreissena veligers, eDNA, and zooplankton found in the south shore of Lake Superior in 2019. The sheets "ZooplanktonCommunity", "eDNA", "VeligerSize", and "Temperature" have the data itself, sheet "Metadata" (this sheet) describes the fields. This spreadsheet was created on 26-Oct-2021 by Courtney Larson. 

This dataset is associated with the following publication:
Larson, C., J. Barge, C. Hatzenbuhler, J. Hoffman, G. Peterson, E. Pilgrim, B. Wiechman, C. Rees, and A. Trebitz. Invasive Dreissena Mussel Coastal Transport From an Already Invaded Estuary to a Nearby Archipelago Detected in DNA and Zooplankton Surveys.   Frontiers in Marine Science. Frontiers, Lausanne,  SWITZERLAND, 9: 818738, (2022).

Tags: dreissena, invasive-species-monitoring, lake-superior, water-currents
Organization: U.S. Environmental Protection Agency
Identification of Branched and Linear Forms of PFOA and Potential Precursors: A User-Friendly SMILES Structure-based Approach

Data files for "Identification of Branched and Linear Forms of PFOA and Potential Precursors: A User-Friendly SMILES Structure-based Approach". 

This dataset is associated with the following publication:
Richard, A., H. Hidle, G. Patlewicz, and A. Williams. Identification of Branched and Linear Forms of PFOA and Potential Precursors: A User-Friendly SMILES Structure-based Approach.   Frontiers in Environmental Science. Frontiers, Lausanne,  SWITZERLAND, 10: 865488, (2022).

Tags: branched, dsstox, linear, pfas, pfasstruct, pfoa, smiles
Organization: U.S. Environmental Protection Agency
Live Cell Imaging of Oxidative Stress in Human Airway Epithelial Cells Exposed to Isoprene Hydroxy Hydroperoxide METADATA

Data corresponding to figures contained in manuscript. 

This dataset is associated with the following publication:
Masood, S., E. Pennington, S. Simmons, P. Bromberg, S. Shaikh, R. Rice, A. Gold, Z. Zhang, and J. Samet. Live cell imaging of oxidative stress in human airway epithelial cells exposed to isoprene hydroxyhydroperoxide.   Redox Biology. Elsevier B.V., Amsterdam,  NETHERLANDS, 51: 102281, (2022).

Tags: air-pollution-effect, primary-human-lung-cells, secondary-organic-aerosol-soa
Organization: U.S. Environmental Protection Agency
Strategic Vision New Vehicle Experience Survey 2014-2016 and Fuel Economy Data

Data consists of 1) EPA measured fuel economy, in terms of miles per gallon (MPG) or miles per gallon equivalent (MPGe), were obtained from fueleconomy.gov for vehicle model years 2013, 2014, 2016, and 2017, and 2) New Vehicle Experience Survey (NVES) data for calendar years 2014, 2015, and 2016. The survey data is confidential business information (CBI). These data were matched at the make-model level of specificity.

The data includes over 800,000 survey responses regarding consumer characteristics, vehicle attributes, consumer satisfaction, and the consumer purchase process plus fuel economy information for purchased and considered vehicles. This dataset is not publicly accessible because: EPA cannot release CBI, or data protected by copyright, patent, or otherwise subject to trade secret restrictions. Request for access to CBI data may be directed to the dataset owner by an authorized person by contacting the party listed. It can be accessed through the following means: Request for access to the Strategic Vision New Vehicle Experience Survey data for calendar years 2014, 2015, and 2016 may be directed to the following:

Edwards Associates Inc., The
Attention: DBA Strategic Vision
10725 Tierrasanta Blvd.
San Diego, CA 92124. Format: EPA measured fuel economy, in terms of miles per gallon (MPG) or miles per gallon equivalent (MPGe), were obtained from fueleconomy.gov for vehicle model years 2013, 2014, 2016, and 2017. These data were matched  at the make-model level of specificity to New Vehicle Experience Survey data for calendar years 2014, 2015, and 2016. The survey data is confidential business information (CBI). 

The fuel economy data and survey data were initially downloaded and received as comma delimited files and later processed using statistical software (i.e., SAS, R, Python). Citation information for this dataset can be found in the EDG's Metadata Reference Information section and Data.gov's References section.

Tags: consumer-new-vehicle-criteria, fuel-economy-data-vehicle, new-vehicle-consumer-satisfaction, new-vehicle-purchase-process, vehicle-attributes-and-features
Organization: U.S. Environmental Protection Agency