AndreaBozzo/ceres-open-data-index huggingface dataset:
Hepatic Transcriptome of Japanese quail (Coturnix japonica) Exposed to 17β-Trenbolone

The files in this data release are RNA seq datafiles from a study that examined the effects of the synthetic anabolic steroid 17β hydroxyestra 4,9,11 trien-3-one, trenbolone (17βT - CAS 10161-33-8), a common contaminant of wastes from confined animal feeding operations (CAFOs). Japanese quail (Coturnix japonica) were exposed in the egg and through feed to multiple doses of 17βT and liver transcriptomes were examined to identify genes and pathways directly affected by this androgenic compound. RNA was extracted from liver of adults and embryos and analyzed (1x50 bp) on an Illumina HiSeq 2000. NCBI Biosample accessions and the raw counts that were input into the differential expression analysis are provided in this dataset. The raw sequence data are available at the NCBI Sequence Read Archive under Bioproject numbers PRJNA313918 and PRJNA313931.

Tags: ecotoxicology, molecular-biology, rna-sequencing, usgs-602d430ed34eb120311497a0
Organization: Department of the Interior
HATTERAS_BASELINE: Offshore baseline for Hatteras Island from Oregon Inlet to Cape Hatteras Point, North Carolina (geographic, WGS84).

The shoreline of Cape Hatteras, North Carolina, is experiencing long-term coastal erosion. In order to better understand and monitor the changing coastline, historical aerial imagery is used to map shoreline change. For the area of Hatteras Island from Cape Point to Oregon Inlet, fourteen aerial datasets from 1978-2002 were scanned and georeferenced for use in a Geographic Information System (GIS). Shoreline positions (high water line) were digitized from georeferenced imagery. The shoreline vectors were then compiled for use in the Digital Shoreline Analysis System (DSAS) ArcGIS extension in order to generate rates of shoreline change.

Tags: accretion, atlantic-coast, atlantic-ocean, baseline, buxton-quadrangle, caha, cape-hatteras-lighthouse, cape-hatteras-national-seashore, cape-hatteras-point, cape-hatteras-quadrangle, cmgp, coastal-and-marine-geology-program, digital-shoreline-analysis-system, dsas, endpoint-rate, environment, erosion, geology, geomorphology, geoscientificinformation, hatteras-island, high-water-line, historical-aerial-imagery, linear-regression-rate, little-kinnakeet-quadrangle, monitoring, national-park-service, north-america, north-carolina, northeast-region, oceans, oceans-and-coastal, oceans-and-estuaries, oregon-inlet, oregon-inlet-quadrangle, pamlico-sound, pea-island-national-wildlife-refuge, pea-island-quadrangle, rodanthe-quadrangle, shoreline, shoreline-change, shoreline-change-rate, st-petersburg-coastal-and-marine-science-center, storms, transect, u-s-geological-survey, united-states, usgs, usgs-c7b885e9-8489-465a-bf34-ce312a6135d9
Organization: Department of the Interior
Interferometric Synthetic Aperture Radar Data, Mojave River and Morongo Groundwater Basins, Southwestern Mojave Desert, California, 2014-19

Synthetic aperture radar (SAR) data from the European Space Agency's (ESA) Sentinel-1A satellite were acquired for this study from the Alaska Satellite Facility (ASF) and used to generate spatially detailed land-surface deformation maps (interferograms) for the Mojave River and Morongo groundwater basins during 2014–19 using conventional InSAR methods.

Tags: apple-valley, apple-valley-north, california, geoscientificinformation, hesperia, insar, interferometric-synthetic-aperture-radar, mojave-desert, mojave-river, mojave-river-groundwater-basin, morongo-groundwater-basin, san-bernardino, san-bernardino-county, subsidence, usgs-602592b2d34eb12031138d55, victorville
Organization: Department of the Interior
Wind rose plots for the volcano: 211800  Amiata

This zip folder contains ASCII text files of vectors at the specified volcano at 
12-hour intervals, 
from January 1, 1990 through December 28, 2009.  
The wind vectors are divided into five files, names by their elevation range above 
sea level in the atmosphere: 00-05km.txt; 05-11km.txt; 11-16km.txt; 16-24km.txt; 
and 24-30km.txt. 
The zip folder also contains a subfolder "figures", with Wind rose plots of wind 
direction and speed over 
this time period.  The plots are by season, and by elevation, given a total of 20 
plots (4 seasons, 5 
elevation ranges).  A summary plot is also included which gives the year-round 
wind pattern at the volcano, 
at 0-5 km elevation.  Plots are in both jpg and pdf format.

Tags: meteorology, usgs-58d00fb9e4b0236b68f527ec, volcanic-ash, volcanic-eruption-forecasting, wind
Organization: Department of the Interior
National Assessment of Oil and Gas Project - Denver Basin Province (039) Total Petroleum Systems

The Total Petroleum System is used in the National Assessment Project and incorporates the Assessment Unit, which is the fundamental geologic unit used for the assessment of undiscovered oil and gas resources.  The Total Petroleum System is shown here as a geographic boundary defined and mapped by the geologist responsible for the province and incorporates not only the set of known or postulated oil and (or) gas accumulations, but also the geologic interpretation of the essential elements and processes within the petroleum system that relate to source, generation, migration, accumulation, and trapping of the discovered and undiscovered petroleum resource(s).

Tags: 39-denver-basin-province, 503901-coalbed-methane, 50390181-denver-formation-coals, 50390182-laramie-formation-coals, 503902-upper-cretaceous-fractured-niobrara, 50390201-fractured-niobrara-limestone-transitional, 50390261-fractured-niobrara-limestone-silo-field-area, 503903-upper-cretaceous-pierre-shale, 50390361-fractured-pierre-shale, 503904-lower-cretaceous, 50390401-dakota-group-and-d-sandstone, 50390402-subthrust-structural, 503905-permian-pennsylvanian, 50390501-permian-pennsylvanian-reservoirs, 503906-cretaceous-composite, 50390601-pierre-shale-sandstones, 50390661-niobrara-codell-wattenberg-area, 50390662-dakota-group-basin-center-gas, 503907-upper-cretaceous-niobrara-biogenic-gas, 50390761-niobrara-chalk, co, coalbed-methane-resources, colorado-front-range, denver-basin, earth-science, economic-geology, energy-resources, gas-hydrate-resources, geology, geoscientificinformation, higley-debra, ks, national-assessment-of-oil-and-gas, natural-gas, natural-gas-resources, natural-resources, ne, noga2000, nogadbasin, oil, oil-sand-resources, oil-shale-resources, oilgas, resource-assessment, sd, total-petroleum-system, u-s-geological-survey, united-states, us08-colorado, us20-kansas, us31-nebraska, us46-south-dakota, us56-wyoming, usgs, usgs-60ca731cd34e86b938a10903, usgs-world-energy-region-5, wy
Organization: Department of the Interior
Coastwide Reference Monitoring System (CRMS) 2005, 2008, 2012, 2016, 2018, and 2021 Site 3639 land-water matrix

Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in Louisiana rely on monitoring to determine the efficacy of these projects. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum. As part of CRMS, land and water classifications are created from Digital Orthophoto Quarter Quadrangles (DOQQs) approximately every three years at all CRMS sites. This dataset consists of a matrix of six land-water products (2005, 2008, 2012, 2016, 2018, and 2021).  The resulting matrix has 64 possible classes defined by the combination of land and water categories on those six dates.

Tags: alteration-of-wetland-habitats, cartography, coastal, coastal-louisiana, crms, doqq, emergent-wetland, forested-wetland, geographic-information-system, imagerybasemapsearthcover, land-water, louisiana, mapping, marsh, protection, restoration, scrub-shrub-wetland, state-of-louisiana, usgs-64dfbbaad34e5f6cd553c0e6, wetland, wetland-ecosystems, wetland-restoration
Organization: Department of the Interior
U.S. Landsat 4-8 Analysis Ready Data (ARD) Level-2 Tiles (Albers projection)

The Analysis Ready Data (ARD) Landsat Level-2 Tiles consist of surface reflectance (SR), surface temperature (ST),  top of atmosphere (TA) reflectance, brightness temperature (BT), and quality assessment (QA)) data that are consistently processed using per pixel solar zenith angle corrections, gridded to a common cartographic projection, and accompanied by appropriate metadata to enable further processing while retaining traceability of data provenance.  Subsequently, numerous products are derived from ARD that are used as direct inputs to monitoring and assessment activities, including maps of land cover and land cover change, spectral indices, temporal composites, and higher-level science products such as burned area, dynamic surface water extent, and fractional snow covered area.
Landsat ARD are generated in the Albers Equal Area Conic (AEA) for conterminous U.S. and Hawaii map projection.  Alaska is generated to Alaska Albers map projection.  They are processed directly from Level-1 AEA scenes through Level-2 products using the World Geodetic System 1984 (WGS84) datum.  The products cover the conterminous United States (CONUS), Alaska, and Hawaii.


Tags: brightness-temperature, climate-data-record, earth-resources-observation-and-science-eros-center, earth-science, imagery, imagerybasemapsearthcover, infrared-imagery, infrared-wavelengths, land-use-land-cover-theme, level-2-albers-identifier, national-geospatial-data-asset, ngda-portfolio-themes, quality-assessment, radiance, remote-sensing, satellite, surface-reflectance, surface-temperature, top-of-atmosphere-reflectance, u-s-geological-survey-usgs, usgs-eros5e83a38b677b457d, visible-imagery, visible-wavelengths
Organization: Department of the Interior
Coastwide Reference Monitoring System (CRMS) 2005, 2008, 2012, and 2016 Site 0148 land-water matrix

Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in Louisiana rely on monitoring efforts to determine the efficacy of these efforts. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum. As part of CRMS, land and water classifications are created from Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection, and Restoration Act (CWPPRA) in Louisiana rely on monitoring efforts to determine the efficacy of these efforts. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum. As part of CRMS, land and water classifications are created from Digital Orthophoto Quarter Quadrangles (DOQQs) approximately every three years at all CRMS sites. This dataset consists of a matrix of four land-water products (2005, 2008, 2012, and 2016).  The resulting matrix has 16 possible classes defined by the combination of land and water categories on those four dates.

Tags: alteration-of-wetland-habitats, cartography, coastal, crms, doqq, emergent-wetland, forested-wetland, geographic-information-system, imagerybasemapsearthcover, land-water, louisiana, mapping, marsh, protection, restoration, scrub-shrub-wetland, state-of-louisiana, usgs-5b6319b5e4b006a11f717716, wetland, wetland-ecosystems, wetlands
Organization: Department of the Interior
Wind rose plots for the volcano: 390028  Hudson Mountains

This zip folder contains ASCII text files of vectors at the specified volcano at 
12-hour intervals, 
from January 1, 1990 through December 28, 2009.  
The wind vectors are divided into five files, names by their elevation range above 
sea level in the atmosphere: 00-05km.txt; 05-11km.txt; 11-16km.txt; 16-24km.txt; 
and 24-30km.txt. 
The zip folder also contains a subfolder "figures", with Wind rose plots of wind 
direction and speed over 
this time period.  The plots are by season, and by elevation, given a total of 20 
plots (4 seasons, 5 
elevation ranges).  A summary plot is also included which gives the year-round 
wind pattern at the volcano, 
at 0-5 km elevation.  Plots are in both jpg and pdf format.

Tags: meteorology, usgs-58d018f5e4b0236b68f533ea, volcanic-ash, volcanic-eruption-forecasting, wind
Organization: Department of the Interior
Bsal Not Detected After Pet Release in Western Massachusetts Pond [Data Release]

These data have been collected by the United States Geological Survey’s Northeast Amphibian Research and Monitoring Initiative (USGS NEARMI) scientists. We collected these data to examine if Bsal was introduced to a site where there was a known pet release in Western, Massachusetts.

Tags: biota, massachusetts, northeastern-united-states, usgs-67570b51d34e5c5dfd05c12f
Organization: Department of the Interior
Multibeam bathymetry data collected in 2015 near Cross Sound, southeast Alaska, during field activity 2015-629-FA

These metadata describe bathymetry collected during a 2015 multibeam echosounder survey near Cross Sound, southeast Alaska. Data were collected by the U.S. Geological Survey (USGS) and the Alaska Department of Fish and Game (ADFG) aboard the ADFG R/V Solstice during USGS field activity 2015-629-FA. The bathymetry data are published here as a 32-bit GeoTIFF image.

Tags: bathymetry, bathymetry-and-elevation, bathymetry-measurement, cmhrp, coastal-and-marine-hazards-and-resources-program, cross-sound, field-observation, geoscientificinformation, geospatial-datasets, graves-harbor, icy-point, lisianski-inlet, marine-geophysics, multibeam-sonar, pacific-coastal-and-marine-science-center, pcmsc, queen-charlotte-fault, sea-floor-characteristics, seabed, seafloor-topography, state-of-alaska, u-s-geological-survey, usgs, usgs-5abc0e9ce4b081f61abd5c61, yakobi-sea-valley
Organization: Department of the Interior
Dissolved Gas Modeling Results for Groundwater Samples Collected in the Western Lake Michigan Drainages and Eastern Iowa Basins Study Areas of the United States: 2007, 2017

This data release contains the results from a study of the transport and transformation of nitrate in groundwater and streams across diverse glacial terranes within the Western Lake Michigan (WMIC) Drainages and Eastern Iowa (EIWA) Basins of the United States. The primary focus of the study was on how varying redox conditions influence the timing and delivery of nitrate to streams in agricultural watersheds. The data represents dissolved gas modeling results that were obtained from the Dissolved Gas Modeling and Environmental Tracer Analysis (DGMETA) software program. DGMETA was used to produce calibrated dissolved gas models that provide optimal recharge temperature, excess air, and excess nitrogen gas concentrations (mainly from denitrification) based on measured dissolved gases.

Tags: environment, groundwater-quality, inlandwaters, iowa, michigan, minnesota, nutrient-content-water, surface-water-quality, usgs-6089f2d6d34ef6cfc4a89106
Organization: Department of the Interior
Digital Orthorectified Aerial Image of Cottonwood Lake Study Area Wetland P7 from 1995

Orthorectified image from aerial photograph of wetland P7 in the Cottonwood Lake Study Area, Stutsman County, North Dakota. This image is part of a collection of photographs of the study area acquired during July and early August from 1975 to 2015.

Tags: aerial-photography, chase-lake-wetland-management-districtgtstutsman-county-waterfowl-production-areagteddy, chase-lake-wetland-management-districtgtstutsman-county-waterfowl-production-areagtshuler, cottonwood-lake-study-area, earth-sciencegtbiospheregtecosystemsgtaquatic-ecosystemsgtwetlands, earth-sciencegtbiospheregtecosystemsgtterrestrial-ecosystemsgtwetlands, environment, image-collections, imagerybasemapsearthcover, inlandwaters, north-dakota, northern-great-plains, platformgtaerial-photographs, prairie-pothole-region, stutsman-county, surface-water-non-marine, united-states-of-america, usgs-5880d5dee4b0eeea75d2765a, wetland-ecosystems
Organization: Department of the Interior
LANDFIRE 2016 Remap Existing Vegetation Cover (EVC) Marshall Islands

LANDFIRE's (LF) 2016 Remap (Remap) Existing Vegetation Cover (EVC) represents the vertically projected percent cover of the live canopy for a 30m cell. EVC is produced separately for tree, shrub, and herbaceous lifeforms. Training data depicting percentages of canopy cover are obtained from plot-level ground-based visual assessments and lidar observations. These are combined with Landsat imagery (from multiple seasons), topographic, climate, and other geospatial data sets to inform models built independently for each lifeform. Tree, shrub, and herbaceous lifeforms each have a potential range from 10% to 100%. The three independent lifeform datasets are merged into a single product. The EVC product is then reconciled through QA/QC measures to ensure lifeform is synchronized with both Existing Vegetation Height (EVH) and Type (EVT) products. Disturbance events not visible in the source imagery are accounted for by incorporating LF Remap Annual Disturbance products. LF uses EVC as an input for LF Remap Fuel Vegetation Cover (FVC).

Tags: biota, evc, existing-vegetation-cover, fires, geographic-information-systems, geospatial-datasets, hazard-preparedness, ia, image-collections, imagerybasemapsearthcover, insular-areas, landfire-2016-remap, lf-2016-remap, marshall-islands, oconus, raster-digital-data, remote-sensing, u-s-forest-service-usfs, u-s-geological-survey-usgs, united-states, us, usgs-0ed4424f-9226-4967-9d85-745f1fadcfb2
Organization: Department of the Interior
Digital data sets that describe aquifer characteristics of the High Plains aquifer in western Oklahoma

This data set consists of digital aquifer boundaries for the
High Plains aquifer in western Oklahoma. This area encompasses
the panhandle counties of Cimarron, Texas, and Beaver, and the
western counties of Harper, Ellis, Woodward, Dewey, and Roger
Mills. The High Plains aquifer underlies approximately 7,000
square miles of Oklahoma and is used extensively for irrigation.
The High Plains aquifer is a water-table aquifer and consists
predominately of the Tertiary-age Ogallala Formation and
overlying Quaternary-age alluvial and terrace deposits. In some
areas the aquifer is absent and the underlying Triassic,
Jurassic, or Cretaceous-age rocks are exposed at the surface.
These rocks are hydraulically connected with the aquifer in some
areas.
		
The High Plains aquifer is composed of interbedded sand,
siltstone, clay, gravel, thin limestones, and caliche. The
proportion of various lithological materials changes rapidly
from place to place, but poorly sorted sand and gravel
predominate. The rocks are poorly to moderately well cemented by
calcium carbonate.
		
The aquifer boundaries were constructed by extracting lines from
digital surficial geology data sets based on a scale of
1:125,000 for the panhandle counties and 1:250,000 for the
western counties. Some of the lines were digitized from maps in
a published water-level elevation map for 1980.

Tags: aquifer-boundary, aquifers, environment, geoscientificinformation, ground-water, ground-water-vulnerability, groundwater, groundwater-vulnerability, high-plains-aquifer, inlandwaters, northwestern-oklahoma, ogallala-aquifer, ogallala-formation, panhandle-of-oklahoma, usgs-c44151b8-e182-4296-836f-4bd813725289, western-counties-in-oklahoma, western-oklahoma
Organization: Department of the Interior
2021 Experimental Discrete Field and Laboratory CO2 System Measurements from the Hillsborough River, Florida

This dataset contains carbon dioxide (CO2) system data collected by scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center (SPCMSC) to investigate the effects of Mercuric chloride (HgCl2) on low salinity, organic-rich estuarine water samples acquired from the Tampa Bay estuary located in west central Florida. Discrete water samples were collected using two, 30-liter (30L) Niskin bottles to capture surficial waters from the lower Hillsborough River. Filtered water samples collected from one Niskin bottle were "poisoned" with HgCl2 (according to best practices (Dickson and others, 2007), while filtered water samples collected from the second Niskin were left "as is" (unpoisoned) to act as the experimental control. Water samples were analyzed incrementally over a period of three months at the USGS Carbon Analytical Laboratory in St. Petersburg, Florida. This dataset contains the elapsed time experimental results of CO2 system parameters including water temperature (Celsius, C), salinity, pHT (pH on the total scale), total alkalinity (AT, micromoles/kg), and total dissolved inorganic carbon (CT, micromoles/kg). For further information regarding data collection and/or processing methods, please refer to the associated journal publication (Moore and others, 2023), which is based on a thesis publication by Moore and others (2021).

Tags: coastal-acidification, environment, geochemistry, geoscientificinformation, gulf-of-mexico, hillsborough-bay, hillsborough-river, inlandwaters, ph, salinity, state-of-florida, surface-water-quality, tampa-bay, total-alkalinity, total-dissolved-inorganic-carbon, usgs-a27bb28d-102f-41ee-acfa-99f58621c2d6, water-chemistry, water-temperature
Organization: Department of the Interior
Chemicals of Emerging Concern in Water and Bottom Sediment in the Great Lakes Basin, 2014 - Analytical Methods, Collection Methods, Quality-Assurance Analyses, and Data

The U.S. Geological Survey (USGS), in cooperation with the U.S. Fish and Wildlife Service (USFWS) and St. Cloud State University (SCSU), identified the occurrence of chemicals of emerging concern (CECs) in water and bottom sediment collected in 2014 at 65 sites throughout the Great Lakes Basin. The 2014 effort is part of a long-term study that began in 2010. Included in this directory are collection methods, references to or descriptions of analytical methods used, data for samples collected in 2014, and associated quality-assurance data. Samples were collected during the periods of April to May and August to September by USGS, USFWS, and (or) SCSU personnel. Study sites include tributaries to the Great Lakes located near Green Bay, Wisconsin; Chicago, Illinois; Detroit, Michigan; Grand Rapids, Michigan; Cleveland, Ohio; and Wanakena, New York. During this study, 204 environmental samples and 6 field replicate sample pairs of surface water, 6 field blank-water samples, and 4 laboratory-matrix spike water samples were collected or prepared. Additionally, 21 environmental samples, 3 field replicate sample pairs, and 2 laboratory-matrix spike samples of bottom sediments were collected or prepared. At 22 select water-quality sites, polar organic chemical integrative samplers (POCIS) were deployed in surface waters and analyzed for a similar suite of CECs as were measured in water and bottom-sediment samples. A total of 22 environmental samples, 4 field-blank samples (exposed to ambient air), and 4 field replicate sample pairs were collected or prepared. Water and bottom-sediment samples were prepared and analyzed at the USGS National Water Quality Laboratory (NWQL) in Denver, Colorado. All POCIS samples were extracted at the Environmental Sampling Technologies Laboratory in St. Joseph, Missouri. Extracts were sent to NWQL where final preparation steps and analyses were completed.

Tags: area-of-concern, emerging-contaminants, great-lakes-restoration-initiative, toxicology, usgs-547c7a02e4b0bdc517925ba0
Organization: Department of the Interior