AndreaBozzo/ceres-open-data-index huggingface dataset:
Survival, pathology, and assay details for single low-dose exposure study

Survival results, pathology findings, bacteremia results, immunoassay results, hematology and clinical chemistry findings. 

This dataset is associated with the following publication:
Taft, S., T. Nichols, S. Hines, R. Barnewall, G. Stark, and J. Comer. Physiological responses to a single low dose of Bacillus anthracis spores in the rabbit model of inhalational anthrax.   PATHOGENS. MDPI AG, Basel,  SWITZERLAND, 9(6): 461, (2020).

Tags: anthrax, bacillus-anthracis, dose-response, homeland-security, low-dose, microbial-risk-assessment, physiological-response, rabbit
Organization: U.S. Environmental Protection Agency
Congress Run Taxa Data Final.xlxs

Macroinvertebrate taxa data collected by 3 different methods, 2 sites, on Congress Run stream. 

This dataset is associated with the following publication:
Yeardley, R., S. Jacobs, K. Fritz, and W. Thoeny. Comparison of Three Macroinvertebrate Sampling Methods for Use in Assessment of Water Quality Changes in Flashy Urban Streams.   Journal of Environmental Protection. Scientific Research Publishing, Inc., Irvine, CA, USA, 11(8): 585-609, (2020).

Tags: flashy, macroinvertebrate, method, sampling, streams, urban
Organization: U.S. Environmental Protection Agency
Community EcoHealth Index (CEHI) Output Values

CEHI values and normalized values calculated for each Census block group within each community based on metric weights in individual communities (CEHI_IndW) and based on metric weights averaged across all communities (CEHI_AvgW). These values are mapped at: 
Link to AGOL page (not app): https://arcg.is/1nX9e0 
Link directly to app: https://arcg.is/1zGrjv. 

This dataset is associated with the following publication:
Cochran, F., L. Jackson, A. Neale, J. Lovette, and L. Tran. A Community EcoHealth Index from EnviroAtlas Ecosystem Services Metrics.   International Journal of Environmental Research and Public Health. Molecular Diversity Preservation International, Basel,  SWITZERLAND, 16(15): 2760, (2019).

Tags: cehi, ecohealth, geospatial, greenspace, health-equity, index
Organization: U.S. Environmental Protection Agency
EnviroAtlas Input Metrics for CEHI

The EnviroAtlas metrics of green space and natural environment selected to compute a Community EcoHealth Index. 

This dataset is associated with the following publication:
Cochran, F., L. Jackson, A. Neale, J. Lovette, and L. Tran. A Community EcoHealth Index from EnviroAtlas Ecosystem Services Metrics.   International Journal of Environmental Research and Public Health. Molecular Diversity Preservation International, Basel,  SWITZERLAND, 16(15): 2760, (2019).

Tags: ecohealth, geospatial, greenspace, hazard-buffering, health-equity, health-promotion, index, parks, pm10, runoff, temperature
Organization: U.S. Environmental Protection Agency
Average annual soil loss and sediment yield avoided for each National Land Cover Dataset land cover class for the conterminous US

This data set gives estimates of erosion and sediment yield avoided due to the presence of natural land cover.  These estimates are given for each land cover class and summarized for the conterminous US. The data correspond to Fig 6 in the manuscript. 

This dataset is associated with the following publication:
Woznicki, S., P. Cada, J. Wickham, M. Schmidt, J. Baynes, M. Mehaffey, and A. Neale. Sediment retention by natural landscapes in the conterminous United States.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 745: 140972, (2020).

Tags: ecosystem-services, enviroatlas, rusle, sediment-delivery-ratio, soil-erosion, soil-retention
Organization: U.S. Environmental Protection Agency
Avoided annual soil loss (Mg ha-1 yr-1) and sediment yield (Mg ha-1 yr-1) by presence of natural vegetation.

This data set contains estimated average annual soil loss avoided (Mg ha-1 yr-1) and estimated average annual sediment yield (Mg ha-1 yr-1) avoided aggregated by HUC-12 watersheds for the conterminous US. This data set corresponds to Fig 5 in the manuscript. 

This dataset is associated with the following publication:
Woznicki, S., P. Cada, J. Wickham, M. Schmidt, J. Baynes, M. Mehaffey, and A. Neale. Sediment retention by natural landscapes in the conterminous United States.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 745: 140972, (2020).

Tags: ecosystem-services, enviroatlas, rusle, sediment-delivery-ratio, soil-erosion, soil-retention
Organization: U.S. Environmental Protection Agency
Average annual soil loss and sediment yield by National Land Cover Dataset land cover class for the conterminous US

This data set gives estimates of erosion and sediment yield based on our study for the conterminous US by land cover class. The data correspond to Fig 4 in the manuscript. 

This dataset is associated with the following publication:
Woznicki, S., P. Cada, J. Wickham, M. Schmidt, J. Baynes, M. Mehaffey, and A. Neale. Sediment retention by natural landscapes in the conterminous United States.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 745: 140972, (2020).

Tags: ecosystem-services, enviroatlas, rusle, sediment-delivery-ratio, soil-erosion, soil-retention
Organization: U.S. Environmental Protection Agency
Average Annual Soil Loss and Sediment Yield Calculated for All 12-Digit HUCs in the Conterminous US

This data set contains estimated average annual soil loss (Mg ha-1 yr-1) and estimated average annual sediment yield (Mg ha-1 yr-1) aggregated by HUC-12 watersheds for the conterminous US. This data set corresponds to Fig 3 in the manuscript. 

This dataset is associated with the following publication:
Woznicki, S., P. Cada, J. Wickham, M. Schmidt, J. Baynes, M. Mehaffey, and A. Neale. Sediment retention by natural landscapes in the conterminous United States.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 745: 140972, (2020).

Tags: ecosystem-services, enviroatlas, rusle, sediment-delivery-ratio, soil-erosion, soil-retention
Organization: U.S. Environmental Protection Agency
Comparison of Soil Loss Estimates Derived using the Revised Universal Soil Loss Equation with those Derived by the Iowa State University's Daily Erosion Project for 12-digit HUCs.

This data contains a comparison between the soil loss values we calculated using RUSLE and those produced by the Iowa State University's Daily Erosion Project (DEP). The comparison is done for almost 5,000 12-digit HUC's in Iowa, and parts of  Minnesota, Nebraska, Kansas, and Missouri. The DEP uses the Water Erosion Prediction Project (WEPP) hillslope model with high temporal resolution, Next-Generation Weather 200 RADAR (NEXRAD) precipitation, and crop specific parameters such as C and P factors obtained from the confidential NRI database 
The comparison between RUSLE and DEP was made for HUC-12s with greater than 75% agricultural land cover. This threshold was used because DEP only models  agricultural erosion, while our RUSLE-derived HUC-12 estimates include all land cover types. This data set corresponds to Fig 2 in the manuscript. 

This dataset is associated with the following publication:
Woznicki, S., P. Cada, J. Wickham, M. Schmidt, J. Baynes, M. Mehaffey, and A. Neale. Sediment retention by natural landscapes in the conterminous United States.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 745: 140972, (2020).

Tags: ecosystem-services, enviroatlas, rusle, sediment-delivery-ratio, soil-erosion, soil-retention
Organization: U.S. Environmental Protection Agency
State-level comparisons of annual soil loss between our calculated Revised Universal Soil Loss Equation (RUSLE) estimates and those reported by the USDA National Resources Inventory (NRI)

In the associated manuscript, we used the State-level National Resources Inventory (NRI) annual estimates of sheet and rill erosion to calibrate our RUSLE-derived estimates.  This data set provides the data used in and resulting from that calibration.  The data set relates to Figs 1 a-d in the manuscript. 

This dataset is associated with the following publication:
Woznicki, S., P. Cada, J. Wickham, M. Schmidt, J. Baynes, M. Mehaffey, and A. Neale. Sediment retention by natural landscapes in the conterminous United States.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 745: 140972, (2020).

Tags: ecosystem-services, enviroatlas, rusle, sediment-delivery-ratio, soil-erosion, soil-retention
Organization: U.S. Environmental Protection Agency
Median Agriculture, Pasture, and Barren Cover Management Factors for USDA Crop Management Zones

This data set provides median cover management factors (C-Factor) for agriculture, pasture, and barren land cover classes for each USDA Crop Management Zone.  The C-Factors were calculated based on a Normalized Difference Vegetation Index. MODIS (Moderate Resolution Imaging Spectroradiometer) NDVI values were obtained at 250 m resolution for 16-day intervals between 2000-2014 to calculate a mean annual NDVI.  The data in this file correspond To Table 2 in the associated journal article. 

This dataset is associated with the following publication:
Woznicki, S., P. Cada, J. Wickham, M. Schmidt, J. Baynes, M. Mehaffey, and A. Neale. Sediment retention by natural landscapes in the conterminous United States.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 745: 140972, (2020).

Tags: ecosystem-services, enviroatlas, modis-ndvi-c-factor, rusle, sediment-delivery-ratio, soil-erosion, soil-retention
Organization: U.S. Environmental Protection Agency
Metadata for Wild Rice HIA Data Summary

This is a summary of the community input to the Fond du Lac Band of Lake Superior Chippewa's health impact assessment to inform their baseline health assessment. This dataset is not publicly accessible because: It is data that belongs to the Fond du Lac Band of Lake Superior Chippewa. It can be accessed through the following means: Contact Nancy Schuldt 
Fond du Lac Band Natural Resources
NancySchuldt@FDLREZ.COM. Format: Site of data collection (community meeting or survey), individual quotes (this is text data)

Tags: health-impact-assessment, personal-values, qualitative-coding
Organization: U.S. Environmental Protection Agency
scenario water balances, LCA results, QMRA data, cost data from Scaled LCI workbooks

The dataset consists of quantitative microbial risk assessment, life cycle assessment and life cycle cost analysis. 

This dataset is associated with the following publication:
Arden, S., B. Morelli, M. Schoen, S. Cashman, M. Jahne, C. Ma, and J. Garland. Human health, economic and environmental assessment of onsite non-potable water reuse systems for a large, mixed-use urban building.   Sustainability. MDPI AG, Basel,  SWITZERLAND, 12(13): 5459 - 5475, (2020).

Tags: decentralized-treatment, life-cycle-assessment, life-cycle-cost-assessment, membrane-bioreactor, non-potable-reuse, quantitative-microbial-risk-assessment
Organization: U.S. Environmental Protection Agency
CDDP_hypersensitivity_Science Hub_Data.xlxs

Excel file contains data used to generate figures and tables. 

This dataset is associated with the following publication:
Lehmann, D., and W. Williams. Physiological Responses to Cisplatin Using a Mouse Hypersensitivity Model.   INHALATION TOXICOLOGY. Taylor & Francis, Inc., Philadelphia, PA, USA, 32(2): 68-78, (2020).

Tags: cisplatin, cross-reactivity, platinum, pulmonary-hyperresponsiveness, respiratory-hypersensitivity, whole-body-plethysmography
Organization: U.S. Environmental Protection Agency
Reliability of in vitro methods used to measure intrinsic clearance of hydrophobic organic chemicals by fish: results of an international ring trial_Nichols et al._Science Hub entry_02232018

This paper describes the results of an international ring trial (round robin study) of in vitro methods used to measure chemical biotransformation in fish.  Researchers at six laboratories in the U.S. and Europe evaluated six test chemicals (cyclohexyl salicylate, fenthion, 4-n-nonylphenol, deltamethrin, methoxychlor, and pyrene) using two in vitro systems (liver S9 fraction and isolated hepatocytes) derived from rainbow trout livers.  This information was then evaluated to quantitatively characterize assay reliability (repeatability and reproducibility) and evaluate potential user bias associated with the methods.  Additional calculations were performed using established models to estimate in vivo levels of hepatic clearance and predict the effects on chemical biotransformation on chemical bioaccumulation.  The Science Hub dataset includes all information presented in the paper as figures and tables including, as appropriate, individual  values used to calculate reported means and standard deviations.  Also included are all datasets provided as Supplementary Data. 

This dataset is associated with the following publication:
Nichols, J., K. Fay, M.J. Bernhard, I. Bischof, J. Davis, M. Halder, J. Hu, K.  Johanning, H. Laue, D. Nabb, C.  Schlechtriem, H. Segner, J. Swintek, J. Weeks, and M. Embry. Reliability of In Vitro methods used to measure intrinsic clearance of hydrophobic organic chemicals by rainbow trout: Results of an international ring trial.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,  164(2): 563-575, (2018).

Tags: bioaccumulation-modeling, biotransformation, fish, in-vitro-intrinsic-clearance, in-vitro-to-in-vivo-extrapoaltion-ivive, in-vitro-to-in-vivo-extrapolation-ivive, isolated-hepatocytes, liver-s9-fraction, rainbow-trout, ring-trial
Organization: U.S. Environmental Protection Agency
Retiring facilities reported by EIA 2015-2017

Data Sources, including links; 
Data Dictionary; 
2009-2013 American Community Survey, Block group-level Population Data; 
2010 Decennial Census, Block group-level Population Data; 
2008 National Emissions Inventory, Facility-level Data; 
2011 National Emissions Inventory, Facility-level Data; 
2014 National Emissions Inventory, Facility-level Data; 
Revised 2014 National Emissions Inventory, Facility-level Data with retired coal-fired EGUs removed;
2010 Rural-Urban Commuting Area Codes, Tract-level Data;
2011 PM 2.5 Daily Average Fused Air Quality Surface Using Downscaling (FAQSD) Output, mean Tract-level Data, CONUS;
U.S. Energy Information Administration list of retired coal-fired EGUs. 

This dataset is associated with the following publication:
Richmond-Bryant, J., I. Mikati, A. Benson, T. Luben, and J. Sacks. Disparities in Distribution of Particulate Matter Emissions from US Coal-Fired Power Plants by Race and Poverty Status After Accounting for Reductions in Operations Between 2015 and 2017.   American Journal of Public Health. American Public Health Association, Washington, DC, USA, 110(5): 655-661, (2020).

Tags: american-community-survey, national-emissions-inventory, particulate-matter
Organization: U.S. Environmental Protection Agency
Daily PM25 Data_Subregion 1 and 2_2004-2006

This dataset contains daily PM2.5 data for the years 2004-2006. The data for Subregion 1 represents validated PM2.5 data collected from Budapest, Hungary. The data for Subregion 2 consists of randomly modified data, as detailed within the paper, to represent a hypothetical location. 

This dataset is associated with the following publication:
Sacks, J., N. Fann, S. Gumy, I. Kim, G. Ruggeri, and P. Mudu. Quantifying the Public Health Benefits of Reducing Air Pollution: Critically Assessing the Features and Capabilities of WHO’s AirQ+ and U.S. EPA’s Environmental Benefits Mapping and Analysis Program—Community Edition (BenMAP—CE).   ATMOSPHERE. MDPI AG, Basel,  SWITZERLAND, 11(5): 1-15, (2020).

Tags: airq, ambient-air-quality, benmap-ce
Organization: U.S. Environmental Protection Agency
DNA sequencing raw data and analytical results by bioinformatics for column study on algal roganic matter impact.

The excel spreadsheet includes sample IDs and labeling information for DNA sequencing raw data. In addition, DNA concentrations for all the biofilm samples analyzed are presented. 

This dataset is associated with the following publication:
Jeon, Y., l. li, J. Calvillo, H. Ryu, J. Santo Domingo, O. Choi, J. Brown, and Y. Seo. Impact of algal organic matter on the performance, cyanotoxin removal, and biofilms of biologically-active filtration systems.   WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 184: 116120, (2020).

Tags: algal-organic-matter-aom, biofilm, biological-filtration, excitation-emission-matrix-eem, microbial-community-structure, microcystin
Organization: U.S. Environmental Protection Agency
Where have all the nutrients gone? Long-term Decoupling of Inputs and Outputs in the Willamette River Watershed, Oregon, USA

The following 4 tables accompany the peer-reviewed journal article GS Metson, J Lin, JE Compton, JA Harrison. Where have all the nutrients gone? Long-term Decoupling of Inputs and Outputs in the Willamette River Watershed, Oregon, USA. JGR Biogeoscience

Values refer to the Willamette River Watershed, which was defined as the area draining to USGS gauge 14211720 (which is 29 018 km2 when delimiting using HydroSHEDs 15 arc-second flow direction maps (Lehner et al 2006)).

These datasets were created May 2017.

Authors and Affiliations:
Genevieve S. Metson1,2†,3†,4†, Jiajia Lin2†,3†,5, John A. Harrison4 and Jana E. Compton3 
1 Department of Physics, Chemistry, and Biology. Linköping University, Linköping, Sweden. 
2 National Research Council, National Academies of Science, Washington, DC, USA 
3 Pacific Ecological Systems Division, US Environmental Protection Agency, Corvallis, OR, USA 
4 School of the Environment, Washington State University, Vancouver, WA, USA 
5Oak Ridge Institute for Science and Education, Corvallis, OR, USA
 
Corresponding author: Genevieve Metson (genevieve.metson@liu.se)
† Affiliation at time of main research activities 


Tags: balance, nitrogen, nutrients, phosphorus, watersheds
Organization: U.S. Environmental Protection Agency
Regional and urban-scale environmental influences of oceanic DMS emissions over coastal China seas

Model simulations were performed at Fudan University, China. EPA does not have any data associated with the article. This dataset is not publicly accessible because: Fudan University generated input files for the  model and performed model simulations. EPA has not data for the article. It can be accessed through the following means: Contact: Yan Zhang, Fudan University, email: yan_zhang@fudan.edu.cn. Format: Fudan University generated input files for the  model and performed model simulations. Input and output files contains data with ioapi/netcdf format.

Tags: dms-emissions, eastern-china-seas, shanghai, wrf-cmaq
Organization: U.S. Environmental Protection Agency
Auckland North, New Zealand 2016

Lidar was captured for Auckland Council by Aerial Surveys between August 2016 to August 2018. The dataset was generated by Aerial Surveys and their subcontractors. The survey area includes Auckland CBD, Great Barrier Island, Little Barrier Island, North Shore, Waiheke Island, Wellsford, Whangaparaoa, Whatipu, as well as the surrounding area. Data management and distribution is by Land Information New Zealand.

Organization: OpenTopography
Normal Fault Comparisons, Utah 2019

This lidar dataset was collected as part of an NCALM Seed grant for Alba Mar Rodriguez Padilla at the  University of California, Davis.  The goal of the study was to  constrain rheology from lidar based comparisons of  seismogenic versus creeping normal faults.  The study area covers approximately 70 km 2 near Needles Fault, Utah.

Organization: OpenTopography
San Rafael River, Castle Dale, Utah, 2016

NCALM Seed.   PI: Alistair T. Hayden, California Institute of Technology The requested survey area consisted of one polygon located south of Price, UT. The polygon encloses approximately 38 km2 (15 mi2). The survey will support a study on using inverted channels to reconstruct river dynamics and 3D architecture of alluvial stratigraphy on Earth and Mars.

Organization: OpenTopography
Lake Placid, FL: Lidar Survey of the Archibold Biological Station

PI: Hilary Swain, Archibold Biological Station, Florida. The survey area consists of a 86 square kilometer polygon south of Lake Placid, Florida. The area of interest covers the Archibold Biological Station (ABS), an NSF funded project, which is located 3 miles south of Lake Placid.

Organization: OpenTopography
In vivo dermal absorption of pyrethroid pesticides in the rat

Data includes disposition data of radiolabelled pyrethroids (bifenthrin, deltamethrin, cis-permethrin) following topical application.  One dataset is the disposition of pyrethroid-derived radioactivity 24 hr post-application.  The second dataset is the disposition of pyrethroid-derived radioactivity 120 hr post-application. 

This dataset is associated with the following publication:
Hughes , M., and B. Edwards. In vivo dermal absorption of pyrethroid pesticides in the rat..   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH. Taylor & Francis, Inc., Philadelphia, PA, USA, 79(2): 83-91, (2016).

Tags: absorption, disposition, in-vivo, pyrethroids, skin
Organization: U.S. Environmental Protection Agency
Tong EPA smog manuscript dataset

cardiovascular responses of exposure to simulated smog atmospheres in   animals. 

This dataset is associated with the following publication:
Tong, H., J. Krug, T. Krantz, C. King, M. Hargrove, I. Gilmour, and S. Gavett. Inhalation of Simulated Smog Atmospheres Affects Cardiac Function in Mice#.   Cardiovascular Toxicology. Humana Press Incorporated, Totowa, NJ, USA, 18(6): 569-578, (2019).

Tags: cardiac-contractility, cardiac-function, photochemical-reaction, simulated-smog-atmospheres
Organization: U.S. Environmental Protection Agency
Dataset: Smoldering and Flaming Biomass Wood Smoke Inhibit Respiratory Responses in Mice

The dataset consists of 2 revised files. The excel file shows all of the individual data used in calculation of the tables and figures. Each table and figure has data stored on a separate tab of the file. The zip file consists of 5 GraphPad Prism files which show the statistics and graphs used in the paper. The names of the 5 files indicate which figures and tables are analyzed statistically and the graphs generated from the data. 

This dataset is associated with the following publication:
Hargrove, M., Y.H. Kim, C. King, C. Wood, M. Gilmour, J. Dye, and S. Gavett. Smoldering and Flaming Biomass Wood Smoke Inhibit Respiratory Responses in Mice.   INHALATION TOXICOLOGY. Taylor & Francis, Inc., Philadelphia, PA, USA, 31(6): 236-247, (2019).

Tags: asthma, biomass-burning, lung-inflammation, mice, pulmonary-function, wood-smoke
Organization: U.S. Environmental Protection Agency
Early Proteome Shift and Serum Bioactivity Precede Diesel Exhaust-induced Impairment of Cardiovascular Recovery in Spontaneously Hypertensive Rats

The dataset is an excel spreadsheet containing the raw data used to generate the tables and figures in the manuscript. 

This dataset is associated with the following publication:
Thompson, L., J. Shanahan, C. Perez, N. Coates, C. King, M. Hazari, J. Brown, and A. Farraj. Early Proteome Shift and Serum Bioactivity Precede Diesel Exhaust-induced Impairment of Cardiovascular Recovery in Spontaneously Hypertensive Rats.   Scientific Reports. Nature Publishing Group, London,  UK, 9(1): 6885, (2019).

Tags: air-pollution, cardiovascular, diesel-exhaust, dobutamine, endothelial-cells, in-vitro, left-ventricular-pressure, proteomics, serum-bioactivity
Organization: U.S. Environmental Protection Agency
Validation of a dietary questionnaire to assess omega-3 fatty acids levels

Includes the validity test results on the blood level of omega-3 fatty acids and calculated dietary intake of omega-3 fatty acids using the dietary questionnaire. 

This dataset is associated with the following publication:
Shen, W., A. Weaver, C. Salazar, J. Samet, D. Diaz-Sanchez, and H. Tong. Validation of a Dietary Questionnaire to Screen Omega-3 Fatty Acids Levels in Healthy Adults.   Nutrients. MDPI AG, Basel,  SWITZERLAND, 11(7): 1470, (2019).

Tags: dietary-intake, dietary-questionnaire, nutrition, omega-3, omega-3-index
Organization: U.S. Environmental Protection Agency