Initial set of gene ontology (GO) terms for the D v virgifera GCF_003013835.1 RefSeq protein models

<p>Gene ontologies generated using GOanna with a standard pipeline (<a href="https://agbase-docs.readthedocs.io/en/latest/goanna/using_goanna_cmd.html">https://agbase-docs.readthedocs.io/en/latest/goanna/using_goanna_cmd.html</a> ; default settings) with queries against the invertebrate subsection of the UniProt database. Alignments provided in html format. The initial set of gene ontology (GO) terms in the sliminput.txt files generated by GOanna were used as input for GOSlimViewer to parse and summarize molecular function (F), biological process (P) and cellular component (C) at level 2.  Annotations were also converted to gene annotation format (.gaf) file using Goanna2ga.    </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Alignment of Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models against invertebrate proteins in the UniProt database .</p> <p>File Name: Dvir_2.0<em>GOAnna.align</em>.sn060d1588083909.html</p><p>Resource Description: Gapped BLAST and PSI-BLAST results for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models against 22,595 invertebrate protein sequences in the UniProt database at AgBase (invertebrates_exponly.fa)</p><p>Resource Software Recommended: GOanna,url: <a href="https://agbase.arizona.edu/cgi-bin/tools/GOanna.cgi">https://agbase.arizona.edu/cgi-bin/tools/GOanna.cgi</a> </p></li><br><li><p>Resource Title: Summary of all putative GO annotations received for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models.</p> <p>File Name: Dvir_2.0_GOAnna_GOs.sn060d1588083909.txt</p><p>Resource Description: Putative GO annotations received for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models. Contains all putative hit with proteins in a curated UniProt invertebrate database, invertebrates_exponly.fa, maintained at AgAbase (<a href="https://agbase.arizona.edu/cgi-bin/team.pl">https://agbase.arizona.edu/cgi-bin/team.pl</a>)</p><p>Resource Software Recommended: GOanna,url: <a href="https://agbase.arizona.edu/cgi-bin/tools/GOanna.cgi">https://agbase.arizona.edu/cgi-bin/tools/GOanna.cgi</a> </p></li><br><li><p>Resource Title: Annotations used for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models.</p> <p>File Name: Dvir_2.0_GOAnna_ProtAnnotations_sn060d1588083909.txt</p><p>Resource Description: Top annotation received for each Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models. Contains only the "top" hit with proteins in a curated UniProt invertebrate database, invertebrates_exponly.fa, maintained at AgAbase (<a href="https://agbase.arizona.edu/cgi-bin/team.pl">https://agbase.arizona.edu/cgi-bin/team.pl</a>).  Carried through for analyses using GOslim.</p><p>Resource Software Recommended: GOanna,url: <a href="https://agbase.arizona.edu/cgi-bin/tools/GOanna.cgi">https://agbase.arizona.edu/cgi-bin/tools/GOanna.cgi</a> </p></li><br><li><p>Resource Title: Putative GO annotations received for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models reformatted for GOslim input.</p> <p>File Name: Dvir_2.0_GOAnna_sliminput_sn060d1588083909.txt</p><p>Resource Description: Putative GO terms received for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models. </p></li><br><li><p>Resource Title: Summary of GO biological process (BP) terms received for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models.</p> <p>File Name: Dvir_2.0<em>GOslimout.bp</em>.w63fq51588102929.bp_.txt</p><p>Resource Software Recommended: GOslimViewer,url: <a href="https://agbase.arizona.edu/cgi-bin/tools/goslimviewer_select.pl">https://agbase.arizona.edu/cgi-bin/tools/goslimviewer_select.pl</a> </p></li><br><li><p>Resource Title: Summary of GO cellular component (CC) terms received for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models..</p> <p>File Name: Dvir_2.0<em>GOslimoutcc.w63fq51588102929.cc</em>.txt</p><p>Resource Software Recommended: GOslimViewer,url: <a href="https://agbase.arizona.edu/cgi-bin/tools/goslimviewer_select.pl">https://agbase.arizona.edu/cgi-bin/tools/goslimviewer_select.pl</a> </p></li><br><li><p>Resource Title: Summary of GO molecular function (MF) terms received for Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models..</p> <p>File Name: Dvir_2.0_GOslimoutmf.w63fq51588102929.txt</p><p>Resource Software Recommended: GOslimViewer,url: <a href="https://agbase.arizona.edu/cgi-bin/tools/goslimviewer_select.pl">https://agbase.arizona.edu/cgi-bin/tools/goslimviewer_select.pl</a> </p></li><br><li><p>Resource Title: Gene annotation file (.gaf) output generated for GO terms assigned to Diabrotica virgifera virgifera RefSeq GCF_003013835.1 protein models..</p> <p>File Name: GOanna2GA_Reformat_kky33f1592832838.xls</p><p>Resource Software Recommended: GOanna2ga,url: <a href="https://agbase.arizona.edu/cgi-bin/tools/GOanna2ga.cgi">https://agbase.arizona.edu/cgi-bin/tools/GOanna2ga.cgi</a> </p></li></ul><p></p>

Tags: ars, data-gov, diabrotica-virgifera-virgifera, gene-ontology, goanna, np304
Organization: Department of Agriculture