AndreaBozzo/ceres-open-data-index huggingface dataset:
Adverse outcome pathway (AOP) development and weight of evidence evaluation as illustrated by ecological case studies using online tools such as ECOTOX and SeqAPASS

The majority of this dataset includes the query output from online databases ECOTOX and SeqAPASS used to support the ecological AOP case studies described within the manuscript.  The final worksheet includes the raw data used to generate concentration vs response curves for four putative chemical initiators (Supplemental Figure S4). 

This dataset is associated with the following publication:
Fay, K., D. Villeneuve, C. LaLone, Y. Song, K.E. Tollefsen, and G. Ankley. Practical approaches to adverse outcome pathway (AOP) development as illustrated by ecological case studies.   SOCIETY OF ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY JOURNAL. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 36(6): 1429–1449, (2017).

Tags: adverse-outcome-pathway, case-studies, ecotoxicology, risk-assessment, weight-of-evidence
Organization: U.S. Environmental Protection Agency
Monochloramine Cometabolism by Nitrifying Biofilm Relevant to Drinking Water

Data for Figures in manuscript. 

This dataset is associated with the following publication:
Wahman , D., J. Maestre, and G. Speitel Jr.. Monochloramine Cometabolism by Nitrifying Biofilm Relevant to Drinking Water.   JOURNAL OF AMERICAN WATER WORKS ASSOCIATION. American Water Resources Association, Middleburg, VA, USA, 108(7): 362-373, (2016).

Tags: chloramine, nitrification
Organization: U.S. Environmental Protection Agency
Annual variations and effects of temperature on Legionella spp. and other potential opportunistic pathogens in tap and shower water

The data contained in this worksheet provides the quantitative detection of potential pathogens for the bathroom water samples used in this study. 

This dataset is associated with the following publication:
Lu, J., H. Buse, I. Struewing, A. Zhao, D. Lytle, and N. Ashbolt. Annual variations and effects of temperature on Legionella spp. and other potential opportunistic pathogens in tap and shower water.   JOURNAL OF APPLIED MICROBIOLOGY. Blackwell Publishing, Malden, MA, USA, 24(0): 2326-2336, (2016).

Tags: bath-tap-water, legionella, opportunistic-pathogen, qpcr, shower-water, tapwater
Organization: U.S. Environmental Protection Agency
FigS8.txt

This is an ASCII file with georeferencing information containing data plotted in Figure S8 of the supplemental information section of the manuscript. 

This dataset is associated with the following publication:
McCrackin, M., E. Cooter, R. Dennis, J. Harrison, and J. Compton. Alternative futures of dissolved inorganic nitrogen export from the Mississippi River Basin: influence of crop management, atmospheric deposition, and population growth.   BIOGEOCHEMISTRY. Springer, New York, NY, USA, 133(3): 263-377, (2017).

Tags: atmospheric-deposition, dissolved-inorganic-nitrogen, fertilizer, mississippi-river-basin, model-coastal-zone, sewage, tile-drain, tile-drainage-area
Organization: U.S. Environmental Protection Agency
Mutagenicity of Oil Burn Emissions

Description included in the dataset. 

This dataset is associated with the following publication:
DeMarini, D., S. Warren, K. Lavrich, A. Flen, J. Aurell, B. Mitchell, D. Greenwell, B. Preston, J. Schmid, B. Linak, M. Hays, J. Samet, and B. Gullett. Mutagenicity and Oxidative Damage Induced by an Organic Extract of the Particulate Emissions from a Simulation of the Deepwater Horizon Surface Oil Burns.   ENVIRONMENTAL AND MOLECULAR MUTAGENESIS. John Wiley & Sons, Inc, Hoboken, NJ, USA, 58(3): 162-171, (2017).

Tags: emission-factor, mutagenicity, oil-burn, oil-burn-emissions, oxidative-damage, polycyclic-aromatic-hydrocarbons, salmonella
Organization: U.S. Environmental Protection Agency
FigS7.txt

This is an ascii file with georeferencing information containing the data plotted in Figure S7 of the supplemental information manuscript section. 

This dataset is associated with the following publication:
McCrackin, M., E. Cooter, R. Dennis, J. Harrison, and J. Compton. Alternative futures of dissolved inorganic nitrogen export from the Mississippi River Basin: influence of crop management, atmospheric deposition, and population growth.   BIOGEOCHEMISTRY. Springer, New York, NY, USA, 133(3): 263-377, (2017).

Tags: agricultural-land-cover, atmospheric-deposition, dissolved-inorganic-nitrogen, fertilizer, mississippi-river-basin, model-coastal-zone, sewage, tile-drain
Organization: U.S. Environmental Protection Agency
Dataforfigures_NEWSMRB-DIN

These are the values plotted in the manuscript and supplemental information sections. 

This dataset is associated with the following publication:
McCrackin, M., E. Cooter, R. Dennis, J. Harrison, and J. Compton. Alternative futures of dissolved inorganic nitrogen export from the Mississippi River Basin: influence of crop management, atmospheric deposition, and population growth.   BIOGEOCHEMISTRY. Springer, New York, NY, USA, 133(3): 263-377, (2017).

Tags: atmospheric-deposition, dissolved-inorganic-nitrogen, fertilizer, mississippi-river-basin, model-coastal-zone, sewage, tile-drain
Organization: U.S. Environmental Protection Agency
Decontamination of B. globigii spores from drinking water infrastructure using disinfectants

Decontamination of Bacillus spores adhered to common drinking water infrastructure surfaces was evaluated using a variety of disinfectants.  Corroded iron and cement-mortar lined iron represented the infrastructure surfaces, and were conditioned in a 23 m long, 15 cm diameter (75 ft long, 6 in diameter) pilot-scale drinking water distribution pipe system.  Decontamination was evaluated using increased water velocity (flushing) alone at 0.5 m sec-1 (1.7 ft sec-1), as well as free chlorine (5 and 25 mg L-1), monochloramine (25 mg L-1), chlorine dioxide (5 and 25 mg L-1), ozone (2.0 mg L-1), peracetic acid 25 mg L-1) and acidified nitrite (0.1 mol L-1 at pH 2 and 3), all followed by flushing at 0.3 m sec-1 (1 ft sec-1).  Flushing alone reduced the adhered spores by 0.5 and 2.0 log10 from iron and cement-mortar, respectively.   Log10 reduction on corroded iron pipe wall coupons ranged from 1.0 to 2.9 at respective chlorine dioxide concentrations of 5 and 25 mg L-1, although spores were undetectable on the iron surface during disinfection at 25 mg L-1.  Acidified nitrite (pH 2, 0.1 mol L-1) yielded no detectable spores on the iron surface during the flushing phase after disinfection. Chlorine dioxide was the best performing disinfectant with >3.0 log10 removal from cement-mortar at 5 and 25 mg L-1.The data show that free chlorine, monochloramine, ozone and chlorine dioxide followed by flushing can reduce adhered spores by >3.0 log10 on cement-mortar. 

This dataset is associated with the following publication:
Szabo , J., G. Meiners, L. Heckman, G. Rice , and J. Hall. Decontamination of Bacillus spores adhered to iron and cement-mortar drinking water infrastructure in a model system using disinfectants.   JOURNAL OF ENVIRONMENTAL MANAGEMENT. Elsevier Science Ltd, New York, NY, USA, 187: 1-7, (2017).

Tags: acidified-nitrite, bacillus-anthracis, bacillus-atrophaeus, bacterial-spores, cement-mortar, chlorine-dioixde, decontamination, drinking-water, flushing, free-chlorine, infrastructure, iron, monochloramine, ozone, peracetic-acid, water-pipes
Organization: U.S. Environmental Protection Agency
Rainbow trout estrogen receptor (ER) competitive bindng and vitellogenin induction agonism/antagonism data for 94 chemicals

This dataset is from screening 94 diverse chemicals for estrogen receptor (ER) activation in a competitive rainbow trout ER binding assay and a trout liver slice vitellogenin mRNA expression assay. 

This dataset is associated with the following publication:
Hornung, M., M. Tapper, J. Denny, B. Sheedy, R. Erickson, T. Sulerud, R. Kolanczyk, and P. Schmieder. Avoiding false positives and optimizing identification of true negatives in estrogen receptor binding and agonist/antagonist assays.   Applied In vitro Toxicology. Mary Ann Liebert, Inc., Larchmont, NY, USA, 3(2): 163-181, (2017).

Tags: antagonist, competitive-binding, estrogen-receptor, in-vitro, rainbow-trout, vitellogenin
Organization: U.S. Environmental Protection Agency
The average concentrations of As, Cd, Cr, Hg, Ni and Pb in residential soil and drinking water obtained from springs and wells in Rosia Montana area.

The average concentrations of As, Cd, Cr, Hg, Ni and Pb in n=84 residential soil samples, in Rosia Montana area, analyzed by X-ray fluorescence spectrometry are given along with the standard deviations. The metal concentrations of mine pit soil (n=7) provided by Rosia Montana Gold Corporation are also given. The data are compared with the Romanian regulatory exposure levels (Alert threshold (AT) and Intervention threshold (IT)) for residential soil.
The average concentrations of As, Cd, Cr, Hg, Ni and Pb in n=10 drinking water samples collected from springs and wells in Rosia Montana area, analyzed by atomic absorption spectrometry with hydride generation (for As), graphite furnace (for Pb, Cd, Cr, Ni), cold vapors hydride generation (for Hg) are given along with the standard deviations. The secondary data of metal concentrations of the stream waters in Rosia Montana area from 2005-2008, obtained from Rosia Montana Gold Corporation (RMGC) Environmental Impact Assessment Study - water Baseline report, 2007 and  Rosia Montana Gold Corporation (RMGC) Environmental Impact Assessment Study - Surface water quality, 2007 are also available. The Romanian regulatory exposure levels for metals in drinking water are given for comparison purposes. 
The distribution of metal concentrations in residential soils around the Rosia Montana area are given along with the distances from the mine pit. 

This dataset is associated with the following publication:
Neamtiu, I., S. Al-Abed, J. McKernan, C. Baciu, E. Gurzau, A. Pogacean, and S. Bessler. Metals contamination in environmental media in residential areas around Romanian mining sites.  David O. Carpenter, and Peter Sly  REVIEWS ON ENVIRONMENTAL HEALTH. Freund Publishing House Limited, Tel Aviv,  ISRAEL, 31(4): 1-6, (2016).

Tags: contaminated-soil, contaminated-water, metal-contamination, mining
Organization: U.S. Environmental Protection Agency
Spatiotemporal modeling of WNV in mosquitoes in Suffolk County

R code and dataset to produce spatial models. 

This dataset is associated with the following publication:
Meyer, M., S. Campbell, and J. Johnston. Spatiotemporal modeling of ecological and sociological predictors of West Nile virus in Suffolk County, NY, mosquitoes.   Ecosphere. ESA Journals,    8(6): e01854, (2017).

Tags: bayesian, culex-pipiens, disease-ecology, inla, long-island, septic-systems, spatial-modeling, spde, west-nile
Organization: U.S. Environmental Protection Agency
Results of chemical analysis from the 2008-2009 National Rivers and Streams Assessment Survey, including persistent organic pollutants and pharmaceuticals

In 2008-2009, fish are were collected from approximately 560 national streams, which included a representative subset of 154 urban river sites, which were in close proximity to urban areas. Site selection included a mix of statistically-selected and targeted sites. ORD/NERL analyzed fish fillets from the 560 stream sampling sites for 22 pesticides, 21 congeners of PCBs, and 8 congeners of PBDEs. Surface water was collected at the 154 urban river sites, and was analyzed for concentrations of almost 50 human prescription pharmaceuticals. Two data files are included, and report the full findings of the chemical analysis in each individual fish or water sample site for each chemical. 

This dataset is associated with the following publications:
Batt , A., T. Kincaid , M. Kostich , J. Lazorchak , and T. Olsen. Evaluating the extent of pharmaceuticals in surface waters of the United States using a national scale rivers and streams assessment survey.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 35(4): 874-881, (2016).
Batt, A., J. Wathen, J. Lazorchak, T. Olsen, and T. Kincaid. Statistical Survey of Persistent Organic Pollutants: Risk Estimations to Humans and Wildlife through Consumption of Fish from U.S. Rivers.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 51(5): 3021-3031, (2017).

Tags: brominated-flame-retardant, fish, fish-tissue, pcbs, pestcides, pharmaceuticals, water-quality
Organization: U.S. Environmental Protection Agency
Rainwater harvesting human health and environmental impact assessment and sustainability analysis

LCA/LCCA/LCIA data used to create figures and tables in the papers. 

This dataset is associated with the following publications:
Ghimire, S., and J. Johnston. Holistic impact assessment and cost savings of rainwater harvesting at the watershed scale.   Elementa: Science of the Anthropocene. University of California Press (UC Press), Oakland, CA, USA, 5(9): 1-17, (2017).
Ghimire, S., and J. Johnston. A modified eco-efficiency framework and methodology for advancing the state of practice of sustainability analysis as applied to green infrastructure.   Integrated Environmental Assessment and Management. Allen Press, Inc., Lawrence, KS, USA, 13(5): 821-831, (2017).
Ghimire, S., J. Johnston, W. Ingwersen, and S. Sojka. Life cycle assessment of a commercial rainwater harvesting system compared with a municipal water supply system.   JOURNAL OF CLEANER PRODUCTION. Elsevier Science Ltd, New York, NY, USA, 151: 74–86, (2017).

Tags: agricultural-and-domestic-rainwater-harvesting-systems, commercial-rainwater-harvesting, data-envelopment-analysis, eco-efficiency-analysis, energy-intensity, holistic-analysis, life-cycle-assessment, life-cycle-costing, life-cycle-impact-assessment-method, municipal-water-supply, sustainability-analysis, watershed-scale
Organization: U.S. Environmental Protection Agency
Combined Fish Data

The data set is abundance or presence/absence data collected by species from wadeable stream sites along with water chemistry, including specifically specific conductivity and some other variables that were not used in the analysis. 

This dataset is associated with the following publication:
Griffith, M., L. Zheng, and S. Cormier. Using extirpation to evaluate ionic tolerance of freshwater fish.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 37(3): 871-883, (2018).

Tags: fish, freshwater, salinity, sensitivity-distribution, specific-conductivity
Organization: U.S. Environmental Protection Agency
Modeled population exposures to ozone

Population exposures to ozone from APEX modeling for combinations of potential future air quality and demographic change scenarios. This dataset is not publicly accessible because: Total file size is too large (73 GB) to be included in ScienceHub. It can be accessed through the following means: data files are stored at L:\PRIV\DIONISIO\ACE118\APEXFiles\RCode\Rfiles. Format: 73 GB, 2,300 files (saved as .rsav R data files). 

This dataset is associated with the following publication:
Dionisio, K., C. Nolte, T. Spero, S. Graham, N. Caraway, K. Foley, and K. Isaacs. Characterizing the impact of projected changes in climate and air quality on human exposures to ozone.   Journal of Exposure Science and Environmental Epidemiology. Nature Publishing Group, London,  UK, 27(3): 260-270, (2017).

Tags: climate, climate-change, criteria-pollutants, exposure, exposure-modeling, ozone, personal-exposure, population-based-studies
Organization: U.S. Environmental Protection Agency
Global annual surface air temperature change

The data are maintained by NASA (https://data.giss.nasa.gov/gistemp/)  and provides an estimate of global annual surface air temperature change expressed as temperature anomaly in degrees Celsius. This dataset is not publicly accessible because: It is secondary data. It can be accessed through the following means: The data are maintained by NASA (https://data.giss.nasa.gov/gistemp/). Format: The dataset is secondary data gathered from the NASA site (https://data.giss.nasa.gov/gistemp/) and can be downloaded in a variety of formats including *.txt and *.csv. 

This dataset is associated with the following publication:
Ahmad, N., S. Derrible, T. Eason, and H. Cabezas. Using Fisher information to track stability in multivariate systems.   Royal Society Open Science. Royal Society Publishing, London,  UK,  01-08, (2016).

Tags: complex-systems, environmental-change, global-surface-temperature-change, governance, law-and-policy, leading-indicators, nasa, resilience
Organization: U.S. Environmental Protection Agency
Breeding bird survey data

The data are maintained by the USGS (https://www.pwrc.usgs.gov/bbs/RawData/)  and provides information on the trends and status of North American bird populations reported as a population abundance index. This dataset is not publicly accessible because: It is secondary data maintained by USGS. It can be accessed through the following means: https://www.pwrc.usgs.gov/bbs/RawData/). Format: Electronic text files. 

This dataset is associated with the following publication:
Sundstrom, S., T. Eason, J. Nelson, D. Angeler, C. Barichievy, A. Garmestani, N. Graham, D. Granholm, L. Gunderson, M. Knutson, K. Nash, M. Nystrom, T. Spanbauer, C. Stow, and C. Allen. Detecting spatial regimes in ecosystems.   ECOLOGY LETTERS. Blackwell Publishing, Malden, MA, USA, 20(1): 19-32, (2017).

Tags: breeding-bird-survey, community-structure, complex-systems, environmental-change, governance, law-and-policy, leading-indicators, north-america, resilience, usgs
Organization: U.S. Environmental Protection Agency
X-ray spectroscopy results for the pristine nanosilver solution and solution after undergoing the specific usage scenario

The results demonstrate the Ag 3d5/2-3/2 spectrum of the pristine AgNPs. Furthermore, the XAS spectra from the analysis of the nanosilver solution (ASAP-AGX-32) after the disinfection process is demonstrated followed by the LCF results indicating the dominant species formed after the disinfection process. 

This dataset is associated with the following publication:
Gitipour, A., S. Al-Abed, S. Thiel, K. Scheckel, and T. Tolaymat. Nanosilver as a disinfectant in dental unit waterlines: Assessment of the physiochemical transformations of the AgNPs.  Jacob de Boer and Shane Snyder  CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 173: 245-252, (2017).

Tags: dental-unit-waterline, phase-transformations, x-ray-absorption-spectroscopy, x-ray-photoelectron-spectroscopy
Organization: U.S. Environmental Protection Agency
Data used in the analysis presented in the manuscript "Dynamic Evaluation of Two Decades of WRF-CMAQ Ozone Simulations over the Contiguous United States"

Files containing daily maximum 8-hr ozone mixing ratio observations and WRF/CMAQ simulations used in the analysis presented in the manuscript “Dynamic Evaluation of Two Decades of WRF-CMAQ Ozone Simulations over the Contiguous United States”. 

This dataset is associated with the following publication:
Astitha, M., H. Luo, S.T. Rao, C. Hogrefe, R. Mathur, and N. Kumar. Dynamic evaluation of two decades of WRF-CMAQ ozone simulations over the contiguous United States.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 164: 102-116, (2017).

Tags: decadal-simulations, model-evaluation, ozone-design-value, ozone-trends, spectral-decomposition, wrf-cmaq
Organization: U.S. Environmental Protection Agency
Experimental data of Se and B released from FGDG, soil and soil-FGDG mixture in EPA-Method 1314 and optimization of fate and transport model simulation results of Se and B leaching from FGDG in an agricultural field and a landfill.

The leachate concentrations of Se and B released from FGDG, soil and soil-FGDG mixture obtained from EPA-method 1314 is included in the data set. The non-equilibrium partitioning coefficients (NPC) calculated based on the experimental data also included along with the predicted NPC values calculated using a regression model based on a power function. Long term environmental release of Se and B in agricultural field and a landfill calculated using fate and transport model simulation also included in the data set. 

This dataset is associated with the following publication:
Little, K., N. Koralegedara, C. Northeim, and S. Al-Abed. Decision Support for Environmental Management of Industrial Non-Hazardous Secondary Materials:  New Analytical Methods Combined with Simulation and Optimization Modeling.  R. Dewil; J.M. Evans; B. Tansel  JOURNAL OF ENVIRONMENTAL MANAGEMENT. Elsevier Science Ltd, New York, NY, USA, 196: 137-147, (2017).

Tags: beneficial-use-decision-support-system, beneficial-uses, fate-and-transport-model, industrial-non-hazardous-secondary-materials
Organization: U.S. Environmental Protection Agency
CMAQ predicted concentration files

CMAQ predicted ozone. 

This dataset is associated with the following publication:
Gantt, B., G. Sarwar, J. Xing, H. Simon, D. Schwede, B. Hutzell, R. Mathur, and A. Saiz-Lopez. The Impact of Iodide-Mediated Ozone Deposition and Halogen Chemistry on Surface Ozone Concentrations Across the Continental United States.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 51(3): 1458-1466, (2017).

Tags: cmaq, halogen-chemistry, iodide, marine-boundary-layer, ozone-concentrations, ozone-deposition
Organization: U.S. Environmental Protection Agency
Simulating Aqueous-Phase Isoprene-Epoxydiol (IEPOX) Secondary Organic Aerosol Production During the 2013 Southern Oxidant and Aerosol Study (SOAS)

Dataset contains information displayed in figures 1-4 and abstract/table of contents figure. 

This dataset is associated with the following publication:
Budisulistiorini, S., A. Nenes, A. Carlton, J. Surratt, V.F. McNeill, and H. Pye. Simulating Aqueous-Phase Isoprene-Epoxydiol (IEPOX) Secondary Organic Aerosol Production During the 2013 Southern Oxidant and Aerosol Study (SOAS).   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 51(9): 5026-5034, (2017).

Tags: acidity, fine-particulate-matter, isoprene, organosulfate, particulate-matter-pm, secondary-organic-aerosol, soa, soas, sulfate
Organization: U.S. Environmental Protection Agency
Simulated Pathogen Concentrations in Locally-Collected Greywater and Wastewater

This dataset contains simulated pathogen concentrations in locally-collected greywater and wastewater.  Each .zip file includes 21 .csv files, each containing 10,000 years of simulated daily pathogen concentrations in the water type designated by the title (Combined Greywater, Laundry Greywater, Shower Greywater, Sink Greywater, or Onsite Wastewater).  Each .csv file corresponds to one pathogen (Ad Adenovirus, Ca Campylobacter, Cr Cryptosporidium, Gi Giardia, No Norovirus, Ro Rotavirus, or Sa Salmonella) for one population size (5-, 100-, or 1000-person).  For example, ConcAdCombGW100.csv contains concentrations (Conc) of Adenovirus (Ad) in combined greywater (CombGW) for a 100-person population size (100).  Data is structured as 365 rows (days) by 10,000 columns (years), with the first row and column containing year and day indices, respectively.  Units are # pathogens/L water. 

This dataset is associated with the following publication:
Jahne, M., M. Schoen, J. Garland, and N. Ashbolt. Simulation of enteric pathogen concentrations in locally-collected greywater and wastewater for microbial risk assessments.   Microbial Risk Analysis. Elsevier B.V., Amsterdam,  NETHERLANDS, 5: 44-52, (2017).

Tags: decentralized-systems, greywater, log-reduction-target, microbial-risk-assessment, non-potable, pathogens, potable, qmra, wastewater, water-reuse, waterborne-pathogens
Organization: U.S. Environmental Protection Agency