AndreaBozzo/ceres-open-data-index huggingface dataset:
The Detailed Emissions Scaling, Isolation, and Diagnostic (DESID) module in the Community Multiscale Air Quality (CMAQ) Modeling System version 5.3

This dataset documents the simulations demonstrating the capabilities of the new DESID module, a part of CMAQ that allows for adjustment of emissions and expanded diagnostic output.

There are three figures, each with four subpanels, that are provided here. They are all present in the supporting information of the manuscript. There are no figures with data in the main manuscript. This dataset is not publicly accessible because: See explanation above. It can be accessed through the following means: See explanation above. Format: This research paper is somewhat unique in that there is no data presented in the main manuscript. There are three figures presented in the supporting information which are generated from input and output data from CMAQ. The figures are for tutorial purposes only and do not directly contribute to any analysis or conclusions of any scientific hypothesis or policy recommendation. 

The CMAQ code, data and figure scripts used to generate the supporting information figures may be found on ASM in the folder: 
/asm/MOD3DEV/bmurphy/ScienceHub/DESID. 

This dataset is associated with the following publication:
Murphy, B., C. Nolte, F. Sidi, J. Bash, K.W. Appel, C. Jang, D. Kang, J. Kelly, R. Mathur, S. Napelenok, G. Pouliot, and H. Pye. The Detailed Emissions Scaling, Isolation, and Diagnostic (DESID) module in the Community Multiscale Air Quality (CMAQ) Modeling System version 5.3.2.   Geoscientific Model Development. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 14(6): 3407-3420, (2021).

Tags: biogenic-voc, pm2-5, pm2-5-air-quality-modeling, semivolatile-organic-compounds-svocs, soa
Organization: U.S. Environmental Protection Agency
Survival, pathology, and assay results for the multiple low-dose exposures study

Survival results, pathology findings, immunoassay results, hematology and clinical chemistry for each study rabbit. 

This dataset is associated with the following publication:
Taft, S., T. Nichols, S. Hines, R. Barnwall, G. Stark, and J. Comer. Physiological Responses to Multiple Low-Doses of Bacillus anthracis Spores in the Rabbit Model of Inhalation Anthrax.   PATHOGENS. MDPI AG, Basel,  SWITZERLAND, 9(11): 877, (2020).

Tags: anthrax, bacillus-anthracis, dose-response, low-dose, microbial-risk-assessment, multiple-dose, physiological-response, rabbit
Organization: U.S. Environmental Protection Agency
Dataset of Sorption and migration of organophosphate flame retardants between sources and settled dust

The data presented in this data file is a product of a journal publication. The dataset contains OPFR sorption and migration concentrations on settled dust and comparison to literature data. 

This dataset is associated with the following publication:
Liu, X., and E. Folk. Sorption and migration of organophosphate flame retardants between sources and settled dust.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 278: 00, (2021).

Tags: dust-air-partition, dust-source-partition, indoor-dust, organophosphorus-flame-retardants, small-chamber, sorption, source-dust-mass-transfer
Organization: U.S. Environmental Protection Agency
FTOHtubefurnace_ScienceHub_20200616_V1

Per- and polyfluoroalkyl substances (PFAS) are environmental contaminants of emerging concern. The temperature dependent gas-solid reaction of four gas-phase PFAS compounds (fluorotelomer alcohols or FTOHS) with calcium oxide is examined. This reaction shows potential as a PFAS disposal method that forms a stable and environmentally friendly end product, calcium fluoride. In addition to monitoring the destruction of the primary PFAS compound, byproducts of the thermal treatment reaction are identified and monitored to determine whether such products of incomplete destruction, which could also be a source of PFAS in the environment, are removed during the treatment process. 

This dataset is associated with the following publication:
Riedel, T., A. Wallace, E. Shields, J. Ryan, C. Lee, and B. Linak. Low Temperature Thermal Treatment of Gas-Phase Fluorotelomer Alcohols by Calcium Oxide.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 272: 0, (2021).

Tags: gas-phase, pfas, thermal, treatment
Organization: U.S. Environmental Protection Agency
K in urban landscapes

The dataset includes all information needed to develop Figures 2 through 5 of the manuscript. 

This dataset is associated with the following publication:
Shuster, W., L. Schiffman, C. Kelleher, H. Golden, A. Bhaskar, A. Parolari, R. Stewart, and D. Herrmann. K in an Urban World: New Contexts for Hydraulic Conductivity.   JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION. American Water Resources Association, Middleburg, VA, USA, 57(3): 493-504, (2021).

Tags: hydraulic-conductivity, hydraulic-measurements, hydrologic-modeling, urban-hydrology, urban-soils
Organization: U.S. Environmental Protection Agency
EPA Enforcement and Compliance History Online: Water Discharge Monitoring Report Data Sets for FY2012

Integrated Compliance Information System (ICIS) National Pollutant Discharge Elimination System (NPDES) Discharge Monitoring Report (DMR) data sets for Clean Water Act permitted dischargers.

Tags: clean-water-act, compliance, compliance-history, cwa, detailed-facility-report, echo, enforcement, enforcement-actions, environmental-performance, epa-data-download, icis, inspections, npdes, oeca, penalties, permit, permitted-dischargers, permitted-limits, violations
Organization: U.S. Environmental Protection Agency
Camden temperature data

Spreadsheet with data dictionary and data. 

This dataset is associated with the following publication:
Razzaghmanesh, M., M. Borst, J. Liu, F. Ahmed, T. Oconnor, and A. Selvakumar. Air Temperature Reductions at the Base of Tree Canopies.   Journal of Sustainable Water in the Built Environment. American Society of Civil Engineers (ASCE), New York, NY, USA, 7(3): 04021010, (2021).

Tags: green-infrastructure, new-jersey, sensors, temperature, trees, urban-heat-island
Organization: U.S. Environmental Protection Agency
US COVID-19 shutdown shows importance of background NO2 in inferring nitrogen oxide (NOx) emissions from satellite NO2 observations (N/A limited co-author role)

Data used in this study are: (1) 24 hour averaged surface NO2 data for March-August for 2019 & 2020; (2) a total of about 328 AQS sites that have no data gaps; (3) a trend analysis for a subset of those AQS sites that extends back to 2005; and (4) OMI (2005-2020) and TROPOMI (2018-2020) satellite-based data for NO2 tropospheric columns. Note that OMI and TROPOMI make swath measurements from low Earth sun-synchronous polar orbit (i.e., global coverage each day at approximately 1 PM local standard time).  

For data associated with this paper, please contact the corresponding author Zhen Qu at zhenqu@g.harvard.edu. This dataset is not publicly accessible because: Role in this research effort as limited advisor / manuscript co-author on non-EPA and publicly available AQS datasets. It can be accessed through the following means: For data associated with this paper, contact the primary author Zhen Qu at zhenqu@g.harvard.edu. Format: N/A. 

This dataset is associated with the following publication:
Qu, Z., D. Jacob, R. Silvern, V. Shah, P.C. Campbell, L. Valin, and L. Murray. US COVID-19 Shutdown Demonstrates Importance of Background NO2 in Inferring NOx Emissions From Satellite NO2 Observations.   GEOPHYSICAL RESEARCH LETTERS. American Geophysical Union, Washington, DC, USA, 48(10): e2021GL092783, (2021).

Tags: air-emissions, air-quality, nitrogen-dioxide, satellite
Organization: U.S. Environmental Protection Agency
Cape Cod Tapwater 2018 EPA-generated Bioassay Data

Detected in vitro estrogen, androgen, and glucocorticoid receptor activity,in samples in the 2018 tapwater study in Cape Cod, Massachusetts. 

This dataset is associated with the following publication:
Bradley, P., D. LeBlanc, K. Romanok, M. Focazio, M. Cardon, J. Clark, J. Conley, N. Evans, C. Givens, J. Gray, E. Gray, P. Hartig, C. Higgins, M. Hladik, K. Loftin, R.B. McClesky, C. McDonough, E. MedlockKakaley, C. Weis, V. Wilson, L.R. Iwanowicz, and K.L. Smalling. Public and Private Tapwater: Comparative Analysis of Contaminant Exposure and Potential Risk, Cape Cod, MA, USA.   ENVIRONMENT INTERNATIONAL. Elsevier B.V., Amsterdam,  NETHERLANDS, 152(106487): 1, (2021).

Tags: disinfection-byproducts, human-health, inorganics, organics, private-supply, public-supply, sole-source-aquifer, tapwater
Organization: U.S. Environmental Protection Agency
Data contributed by EPA/ORD/CEMM/AESMD to the manuscript The Community Multiscale Air Quality (CMAQ) Model Versions 5.3 and 5.3.1: System Updates and Evaluation

Annual CMAQ model output for 2016 for approximately six different simulations. This dataset is not publicly accessible because: Data are too large to upload to ScienceHub. It can be accessed through the following means: These data can be requested from the author. Format: Data formats include I/O API and csv. 

This dataset is associated with the following publication:
Appel, K.W., J. Bash, K. Fahey, K. Foley, R. Gilliam, C. Hogrefe, B. Hutzell, D. Kang, R. Mathur, B. Murphy, S. Napelenok, C. Nolte, J. Pleim, G. Pouliot, H. Pye, G. Sarwar, D. Schwede, F. Sidi, T. Spero, D. Wong, L. Ran, and S. Roselle. The Community Multiscale Air Quality (CMAQ) Model Version 5.3: System Updates and Evaluation.   Geoscientific Model Development. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 14: 2867-2897, (2021).

Tags: air-quality-modeling, cmaq, model-evaluation
Organization: U.S. Environmental Protection Agency
Indianapolis Research Duplex Total Database

Dataset includes VOC concentrations in ambient air, soil gas, subslab gas, and indoor air; radon measurements from the same locations as the VOC concentrations; weather data; groundwater levels and VOC concentrations in the groundwater; and sampling times and dates.  Predominant VOCs are PCE, TCE, and chloroform. 

This dataset is associated with the following publication:
Lutes, C., C. Holton, B. Schumacher, J. Zimmerman, A. Kondash, and R. Truesdale. Observation of Conditions Preceding Peak Indoor Air Volatile Org Compound Concentrations in Vapor Intrusion Studies.   Groundwater Monitoring & Remediation. Wiley-Blackwell Publishing, Hoboken, NJ, USA, 41(2): 99-111, (2021).

Tags: indicators, tracers, vapor-intrusion, volatile-organic-compounds-vocs
Organization: U.S. Environmental Protection Agency
Parent phototransformation and product formation rates from internal and external evaluation datasets

Tables S1 and S2 provide photolysis transformation rate data compiled from the scientific literature and EFSA reports, respectively.  Table S3 provides rank assignments for each transformation scheme in the CTS reaction library for direct photolysis.  The Documentation sheet provides SMILES strings for example parent molecules and reported photolysis transformation products. 

This dataset is associated with the following publication:
Yuan, C., C. Stevens, and E. Weber. Prioritizing Direct Photolysis Products Predicted by the Chemical Transformation Simulator: Relative Reasoning and Absolute Ranking.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA,  online, (2021).

Tags: cheminformatics, environmental-transformations, photochemical, photolysis, phototransformations, predictive-models, reaction-library
Organization: U.S. Environmental Protection Agency
USEPA-interlab-comparison-data

This data includes the results of an interlab methods comparison to recover and quantify SARS-CoV-2 from wastewater. 

This dataset is associated with the following publication:
Pecson, B., E. Darby, C. Haas, Y. Amha, M. Bartolo, R. Danielson, Y. Dearborn, G. DiGiovanni, C. Ferguson, S. Fevig, E. Gaddis, D. Gray, G. Lukasik, B. Mull, L. Olivas, A. Olivieri, Y. Qu, and S. CoV-2. Reproducibility and sensitivity of 36 methods to quantify the SARS-CoV-2 genetic signal in raw wastewater: findings from an interlaboratory methods evaluation in the U.S..   Environmental Science: Water Research & Technology. Royal Society of Chemistry, Cambridge,  UK, 7(3): 504-520, (2021).

Tags: interlaboratory-comparison, sars-cov-2, wastewater-monitoring
Organization: U.S. Environmental Protection Agency
West Virginia Borehole Temperatures, AASG State Geothermal Data, 1936-2010

Borehole temperature measurements in West Virginia

Tags: apino, bore, borehole, circulation, commodity, county, date, degree, driller, drilling, elevation, ended, field, formation, function, geological, geothermal, header, interest, interval, kentucky, label, latitude, lease, length, long, longitude, measured, measurement, name, notes, observation, operator, point, procedure, producing, production, quality, reference, related, resource, shape, since, source, spud, srs, state, statement, statistics, status, survey, temperature, temperatures, time, total, true, type, uncertainty, units, uri, vertical, well, west virginia, west virginia geological and economic survey
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
1987-2018 cyanobacteria and water quality data for 20 reservoirs

These data include cyanobacteria cell densities (including maximum cell densities observed for each year in each reservoir), annual summer (June-August) precipitation, nutrient concentrations, and May-October surface water temperatures, deep water temperatures, and deep water dissolved oxygen concentrations. 

This dataset is associated with the following publication:
Smucker, N., J. Beaulieu, C. Nietch, and J. Young. Increasingly severe cyanobacterial blooms and deep water hypoxia coincide with warming water temperatures in reservoirs.   GLOBAL CHANGE BIOLOGY. Blackwell Publishing, Malden, MA, USA, 27(11): 2507-2519, (2021).

Tags: algae, cyanobacteria, harmful-algal-blooms, human-health, hypoxia, lakes, nitrogen, nutrients, oxygen, phosphorus, seasonality, temperature, water-quality
Organization: U.S. Environmental Protection Agency
Hydrologic Landscape Vulnerability Assessment Data

JonesEtAl_2021_Study_Locations.shp: This shapefile includes the areas of interest used in our analysis for the analyses published in Jones et al. 2021. Each area of interest is divided into numerous polygonal assessment units as described in the accompanying research article. Each polygon has attributes that include FID, Name, Number (used in our published map figure and tables), and shape area (in meters squared).

US_HLScenarioMerge.shp: We apply the hydrologic landscapes (HL) concept to assess the hydrologic vulnerability of the western United States (U.S.) to projected climate conditions. Our goal is to understand the potential impacts for stakeholder-defined interests across large geographic areas. The basic assumption of the HL approach is that catchments that share similar physical and climatic characteristics are expected to have similar hydrologic characteristics. We map climate vulnerability by integrating the HL approach into a retrospective analysis of historical data to assess variability in future climate projections and hydrology, which includes temperature, precipitation, potential evapotranspiration, snow accumulation, climatic moisture, surplus water, and seasonality of water surplus. This paper illustrates how the HL approach can help assess climatic and hydrologic vulnerability across large spatial scales. By combining the HL concept and climate vulnerability analyses, we provide a planning approach that could allow resource managers to consider how future climate conditions may impact important economic and conservation resources. The data in this data set provides the Feddema Moisture Index, classified climate class, and classified season class for each time decade and 30 yr normal period from 1900-2010 and the 10 analyzed climate model projections described in the manuscript.


Tags: climate, hydrologic-landscape, hydrologic-vulnerability, hydrology, time-series
Organization: U.S. Environmental Protection Agency
XRD Patterns

XRD patterns of magnetic graphene with different magnetite ratios. 

This dataset is associated with the following publication:
Solís, R., O. Dinc, G. Fang, M. Nadagouda, and D. Dionysiou. Activation of inorganic peroxides with magnetic graphene for the removal of antibiotics in wastewater.   Environmental Science: Nano. RSC Publishing, Cambridge,  UK, 8(4): 960-977, (2021).

Tags: antibiotics, inorganic-peroxides, magnetic-graphene, peroxymonosulfate, sulfamethoxazole, water-treatment
Organization: U.S. Environmental Protection Agency
ConleyJustin_A-tdzv_Dataset_20210408

All summary data associated with manuscript figures and tables. 

This dataset is associated with the following publication:
Conley, J., C. Lambright, N. Evans, M. Cardon, E. MedlockKakaley, V. Wilson, and E. Gray. A mixture of 15 phthalates and pesticides below individual chemical No Observed Adverse Effect Levels (NOAELs) produces reproductive tract malformations in the male rat.   ENVIRONMENT INTERNATIONAL. Elsevier B.V., Amsterdam,  NETHERLANDS, 156(106615): 1, (2021).

Tags: antiandrogens, birth-defects, chemical-mixtures, cumulative-assessment, dose-addition, in-utero-effects-on-male-reproductive-development, pesticides, phthalates
Organization: U.S. Environmental Protection Agency
Supporting data for article titled "An Efficient Statistical Approach to Develop IDF Curves for Precipitation and Runoff under Future Climate"

Attached spreadsheets contain datasets used in developing the article titled "An Efficient Statistical Approach to Develop IDF Curves for Precipitation and Runoff under Future Climate". 

This dataset is associated with the following publication:
Butcher, J.B., T. Zi, B.R. Pickard, S.C. Job, T.E. Johnson, and B.A. Groza. Efficient Statistical Approach to Develop Intensity-duration-frequency Curves for Precipitation and Runoff under Future Climate.   CLIMATIC CHANGE. Springer, New York, NY, USA, 164(1-2): 3, (2021).

Tags: climate, intensity, rainfall, stormwater
Organization: U.S. Environmental Protection Agency
McKittrick Canyon Reef Trail strat section, Guadalupe Mtns Nat. Park, TX

Dataset includes SfM point cloud of northeastern edge of McKittrick Canyon in Guadalupe Mountains national park. Point cloud spans portions of the reef trail, extending from carbonate ramp/slope deposits, to overlying massive reef (large cliffs), and backreef deposits (flat layers with overhangs).  

SfM photographs were collected with handheld 55mm zoom lens DSLR camera in May, 2018. Photograph locations were geotagged using an Arrow gold GPS unit to 3D accuracy of ~2 m. 

Bare-earth airborne lidar dataset was used as reference cloud in iterative closest point alignment in CloudCompare V2.12: https://doi.org/10.5069/G9BK19G8. No vegetation filtering or clipping was performed on SfM derived point cloud. 

M3C2 cloud-to-cloud difference between lidar point cloud and SfM point cloud with default parameters and SfM model as cloud 1 yields 1-sigma cloud-to-cloud difference of 0.96 m and 2-sigma cloud-to-cloud difference of 2.38 m.  Lidar point cloud contains significant large holes in cliff overhang locations.

Accuracy is likely not sufficient for change detection analysis but is sufficient for morphometric analysis and stratigraphic mapping. 

Organization: OpenTopography
SfM DSMs of Stromboli volcano (Italy) collected by UAS surveys (2018-2020)

Structure-from-Motion digital surface model (DSM) of Stromboli Volcano (Italy) produced by photogrammetry from repeated UAS surveys before, between, and after the two 2019 paroxysms (September 2018, May, August and September 2019, January and June 2020). These datasets were used to investigate changes in topography at the summit areas of the volcano. Results of this study, as well as further details of these datasets, are published in Civico et al., 2021 - Unoccupied aircraft systems (UAS) reveal the morphological changes at Stromboli volcano (Italy) before, between, and after the 3 July and 28 August 2019 paroxysmal eruptions


Organization: OpenTopography
Westport, lidar, New Zealand, LINZ, Aerial Surveys

Lidar was captured of the Westport area by Aerial Surveys in 2020. The dataset was generated by Aerial Surveys and their subcontractors. The survey area includes Westport and the surrounding area and is part of the all-of-West Coast regional lidar survey, Data management and distribution is by Toit&#363; Te Whenua Land Information New Zealand. Co-funding was provided by the Ministry of Business, Innovation and Employment Provincial Development Unit.

Organization: OpenTopography
Nitrous Oxide flux measurements under various amendments

The dataset consists of measurements of soil nitrous oxide emissions from soils under three different amendments: glucose, cellulose, and manure. Data includes the four isotopomers of nitrous oxide (14N15N16O, 15N14N16O, 14N14N18O, 14N14N16O), and the site preference. 

This dataset is associated with the following publication:
Chen , H., D. Williams , P. Deshmukh , F. Birgand, B. Maxwell, and J. Walker. Probing the Biological Sources of Soil N2O Emissions by Quantum Cascade Laser-Based 15N Isotopocule Analysis.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL. Soil Science Society of America, Madison, WI, USA, 100(0): 175-181, (2016).

Tags: crop-agriculture, nitrous-oxide, site-preference, stable-isotopes
Organization: U.S. Environmental Protection Agency
Genes Encoding Key Enzymes for Nitrogen Metabolism in Sediment Layers

A table (DP_FAMA.xlsx) contains rows as nitrogen pathways genes, columns as sediment layers, and entries representing the abundance of each gene. 

This dataset is associated with the following publication:
Gomez-Alvarez, V., H. Liu, J. Pressman, and D. Wahman. Metagenomic Profile of Microbial Communities in a Drinking Water Storage Tank Sediment after Sequential Exposure to Monochloramine, Free Chlorine, and Monochloramine.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 1(5): 1283-1294, (2021).

Tags: denitrification, drinking-water, genes, metagenomes, microbiome, nitrification, nitrogen-pathways, storage-tank-sediment, waterborne-pathogens
Organization: U.S. Environmental Protection Agency
EPA_PROBsites_wQ.csv

Dataset includes compiled flow/no flow observations from past US EPA probabilistic stream surveys.  Includes latitude/longitude coordinates (dd), drainage area (km2), date, discharge (cms), year (1993-2014), study name, and visit number

Tags: crowdsourcing, database, headwaters, intermittent, non-perennial, perennial
Organization: U.S. Environmental Protection Agency
Microbial Community Analysis based on 16S rRNA gene of Sediment Layers

A table (DP_OTU.xlsx) contains rows as OTUs, columns as samples, and entries representing the abundance of each OTU. 

This dataset is associated with the following publication:
Gomez-Alvarez, V., H. Liu, J. Pressman, and D. Wahman. Metagenomic Profile of Microbial Communities in a Drinking Water Storage Tank Sediment after Sequential Exposure to Monochloramine, Free Chlorine, and Monochloramine.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 1(5): 1283-1294, (2021).

Tags: 16s-rrna, denitrification, drinking-water, metagenomes, microbiome, nitrification, otu, storage-tank-sediment, waterborne-pathogens
Organization: U.S. Environmental Protection Agency
MagnusonMatthew_A-wdcm_dataset_20190715.xlsx

Data corresponding to the figures in the paper. 

This dataset is associated with the following publication:
Xing, Y., A. Ellis, M. Magnuson, and W. Harper. Adsorption of bacteriophage MS2 to colloids: Kinetics and particle interactions.   Colloids and Surfaces A: Physicochemical and Engineering Aspects. Elsevier B.V., Amsterdam,  NETHERLANDS, 585: 124099, (2020).

Tags: adsorption, atomic-force-microscopy, bacteriophage, biocontaminant, biosolids, ms2, wastewater, xdlvo
Organization: U.S. Environmental Protection Agency