AndreaBozzo/ceres-open-data-index huggingface dataset:
Water consumption estimates of the biodiesel process in the US

Electronic supplementary material The online version of this
article (doi:10.1007/s10098-015-1032-8) contains supplementary
material, which is available to authorized users. 

This dataset is associated with the following publication:
Tu, Q., M. Lu, J. Yang , and D. Scott. Water Consumption Estimates of Biodiesel Process in the US.   CLEAN TECHNOLOGIES AND ENVIRONMENTAL POLICY. Springer-Verlag, New York, NY, USA, 18(2): 507-516, (2016).

Tags: biodiesel, irrigation, water-consumption
Organization: U.S. Environmental Protection Agency
Dataset of Atmospheric Environment Publication in 2016, Source emission and model evaluation of formaldehyde from composite and solid wood furniture in a full-scale chamber

The data presented in this data file is a product of a journal publication. The dataset contains formaldehyde air concentrations in the emission test chamber and source emission model simulation results. 

This dataset is associated with the following publication:
Liu , X., M. Mason , Z. Guo , K. Krebs , and N. Roache. Source emission and model evaluation of formaldehyde from composite and solid wood furniture in a full-scale chamber.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 122: 561-568, (2015).

Tags: emission-factor, emissions-from-furnishings, first-order-decay-model, formaldehyde, full-scale-chamber, hcho, power-law-decay-model, source-emission-model
Organization: U.S. Environmental Protection Agency
Dataset of Building and Environment Publication in 2016, A reference method for measuring emissions of SVOCs in small chambers

The data presented in this data file is a product of a journal publication. The dataset contains DEHP air concentrations in the emission test chamber. 

This dataset is associated with the following publication:
Wu, Y., S. Cox, Y. Xu, Y. Liang, D. Wong, X. Liu, J. Benning, P. Clausen, Y. Zhang, C. Liu, and J. Little. A Reference Method for Measuring Emissions of SVOCs in Small Chambers.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 95: 126-132, (2016).

Tags: dehp, inter-laboratory-study, phthalates, reference-method, semi-volatile-organic-compounds
Organization: U.S. Environmental Protection Agency
Gulf of Mexico Nutrient, carbon, CTD data

Gulf of Mexico cruise, nearshore and CTD data collected by the USEPA during 2002 - 2008. 

This dataset is associated with the following publications:
Pauer , J., T. Feist, A. Anstead, P. DePetro, W. Melendez, J. Lehrter , M. Murrell , X. Zhang, and D. Ko. A modeling study examining the impact of nutrient boundaries on primary production on the Louisiana Continental Shelf.   ECOLOGICAL MODELLING. Elsevier Science BV, Amsterdam,  NETHERLANDS, 328: 136-147, (2016).
Feist, T., J. Pauer , W. Melendez, J. Lehrter , P. DePetro, K. Rygwelski , D. Ko, and R. Kreis. Modeling the relative importance of nutrient and carbon loads, boundary fluxes, and sediment fluxes on Gulf of Mexico hypoxia.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 50(16): 88713-8721, (2016).

Tags: ctd, gulf-of-mexico, hypoxia, nutrient-loadings, nutrients
Organization: U.S. Environmental Protection Agency
Bench-Scale and Pilot-Scale Treatment Technologies for the Removal of Total Dissolved Solids from Coal Mine Water: A Review.

There is no database. This dataset is not publicly accessible because: This is a review manuscript, there was not data generated under this effort. All data used was secondary data and sources of the data were identified in the manuscript. It can be accessed through the following means: there is no database. Format: There is no database. 

This dataset is associated with the following publication:
Pinto, P., S. Al-Abed , D. Balz, B. Butler , R. Landy , and S. Smith. Bench-Scale and Pilot-Scale Treatment Technologies for the Removal of Total Dissolved Solids from Coal Mine Water: A Review.  Robert Kleinmann  Mine Water and the Environment. Springer-Verlag, BERLIN-HEIDELBERG,  GERMANY, 35(1): 94-112, (2016).

Tags: adsorption, bioremediation, desalination, distillation, ion-exchange, precipitation, reverse-osmosis, there-is-no-database
Organization: U.S. Environmental Protection Agency
Lab-scale hydrogen peroxide data from ECBC

Data from small lab scale tests conducted at ECBC.  It contains efficacy data as well as data on env conditions such as temperature, RH, and hydrogen peroxide vapor concentration. 

This dataset is associated with the following publication:
Wood, J., W. Calfee, S. Ryan, L. Mickelsen, M. Clayton, and V. Rastogi. A Simple Decontamination Approach Using Hydrogen Peroxide Vapor for Bacillus anthracis Spore Inactivation.   JOURNAL OF APPLIED MICROBIOLOGY. Blackwell Publishing, Malden, MA, USA, 121(6): 1603-1615, (2016).

Tags: antimicrobial, bacillus-anthracis, bacterial-spores, decontamination, hydrogen-peroxide-vapor
Organization: U.S. Environmental Protection Agency
Draft genome sequence of two Shingopyxis sp. strains H107 and H115 isolated from a chloraminated drinking water distriburion system simulator

Draft genome sequence of two Shingopyxis sp. strains H107 and H115 isolated from a chloraminated drinking water distriburion system simulator. 

This dataset is associated with the following publication:
Gomez-Alvarez, V., S. Pfaller , and R. Revetta. Draft Genome of Two Sphingopyxis sp. Strains, Dominant Members of the Bacterial Community Associated with a Drinking Water Distribution System Simulator.   Genome Announcements. American Society for Microbiology, Washington, DC, USA, 4(2): e00183-16, (2016).

Tags: antibiotic-resistance, drinkig-water, drinking-water, genes, genome, shingopyxis, sphingopyxis
Organization: U.S. Environmental Protection Agency
Rumsey and Walker_AMT_2016_Figure 2.xlsx

Figure summarizes uncertainty (error) in hourly gradient flux measurements by individual analyte. Flux uncertainty is derived from estimates of uncertainty in chemical gradients and turbulent transfer velocity. 

This dataset is associated with the following publication:
Rumsey, I. Application of an online ion chromatography-based instrument for gradient flux measurements of speciated nitrogen and sulfur.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 9(6): 2581-2592, (2016).

Tags: bidirectional-flux, deposition, flux-gradient-method, flux-uncertaintly, marga, micrometeorology, nitrogen, sulfur
Organization: U.S. Environmental Protection Agency
Rumsey and Walker_AMT_2016_Figure 1.xlsx

Figure summarizes diurnal profiles of uncertainty in the chemical gradient and transfer velocity measurements from which fluxes are calculated. 

This dataset is associated with the following publication:
Rumsey, I. Application of an online ion chromatography-based instrument for gradient flux measurements of speciated nitrogen and sulfur.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 9(6): 2581-2592, (2016).

Tags: bidirectional-flux, deposition, gradient-uncertainty, micrometeorology, nitrogen, sulfur, transfer-velocity
Organization: U.S. Environmental Protection Agency
Rumsey and Walker_AMT_2016_Table 2.xlsx

Table summarizes instrument precision assessed by collocating the two sample boxes. Precision is quantified as the standard deviation of the residuals of an orthogonal least squares regression of concentrations from the two sample boxes. This allows for an estimation of gradient precision and ultimately gradient and flux detection limits. 

This dataset is associated with the following publication:
Rumsey, I. Application of an online ion chromatography-based instrument for gradient flux measurements of speciated nitrogen and sulfur.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 9(6): 2581-2592, (2016).

Tags: bidirectional-flux, colocation, deposition, flux-detection-limit, gradient-detection-limit, marga, micrometeorology, nitrogen, orthogonal-least-squares, sulfur
Organization: U.S. Environmental Protection Agency
Rumsey and Walker_AMT_2016_Table 1

Table summarizes instrument analytical detection limits, including liquid and equivalent air concentrations. 

This dataset is associated with the following publication:
Rumsey, I. Application of an online ion chromatography-based instrument for gradient flux measurements of speciated nitrogen and sulfur.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 9(6): 2581-2592, (2016).

Tags: bidirectional-flux, deposition, detection-limit, marga, micrometeorology, nitrogen, sulfur
Organization: U.S. Environmental Protection Agency
Human infective potential of Cryptosporidium spp., Giardia duodenalis and Enterocytozoon bieneusi in urban wastewater treatment plant effluents

Cryptosporidiosis, giardiasis, and microsporidiosis are important waterborne diseases. In the
standard for wastewater treatment plant (WWTP) effluents in China and other countries, fecal
coliform is the only microbial indicator, raising concerns about the potential for pathogen
transmission through WWPT effluent reuse. In this study, we collected 50 effluent samples
(30 L/sample) from three municipal WWTPs in Shanghai, China and analyzed for Cryptosporidium
spp., Giardia duodenalis and Enterocytozoon bieneusi by microscopy and/or PCR. Moreover,
propidium monoazide (PMA)-PCR was used to assess the viability of oocysts/cysts. The microscopy
and PCR-positive rates for Cryptosporidium spp. were 62% and 40%, respectively. The occurrence
rates of G. duodenalis were 96% by microscopy and 92–100% by PCR analysis of three genetic loci.
Furthermore, E. bieneusi was detected in 70% (35/50) of samples by PCR. Altogether, ten
Cryptosporidium species or genotypes, two G. duodenalis genotypes, and 11 E. bieneusi genotypes
were found, most of which were human-pathogenic. The chlorine dioxide disinfection employed in
WWTP1 and WWTP3 failed to inactivate the residual pathogens; 93% of the samples from WWTP1 and
83% from WWTP3 did not meet the national standard on fecal coliform levels. Thus, urban WWTP
effluents often contain residual waterborne human pathogens. 

This dataset is associated with the following publication:
Ma, J., Y. Feng, Y. Hu, E. Villegas , and L. Xiao. Human infective potential of Cryptosporidium spp., Giardia duodenalis and Enterocytozoon bieneusi in urban wastewater treatment plant effluents.   JOURNAL OF WATER AND HEALTH. IWA Publishing, London,  UK, 14(4): 411-423, (2016).

Tags: cryptosporidium, giardia, microsporidia, occurrence, wastewater, wastewater-treatment-plant, water-reuse
Organization: U.S. Environmental Protection Agency
Conference Report: The 6th International Symposium on Waterborne Pathogens

A review of current literature on the occurrence of waterborne pathogens in DW systems. This dataset is not publicly accessible because: I am using published data from a journal not generated by EPA. It can be accessed through the following means: N/A. Format: no unique data has been generated. 

This dataset is associated with the following publication:
Rochelle, P., P. Klonicki, G. DiGiovanni, V. Hill, Y. Akagi, and E. Villegas. Conference Report: The 6th International Symposium on Waterborne Pathogens ISWP 2015.   JOURNAL OF THE AMERICAN WATER WORKS ASSOCIATION. American Water Works Association, Denver, CO, USA, 107(10): 24-32, (2015).

Tags: cryptosporidium, drinking-water, drinking-water-distribution-systems, legionella, naeglaria, waterborne-pathogens
Organization: U.S. Environmental Protection Agency
Effects of Cr(III) and CR(VI) on nitrification inhibition as determined by SOUR, function-specific gene expression and 16S rRNA sequence analysis of wastewater nitrifying enrichments

Data generated to test nitrification inhibition of chromium. 

This dataset is associated with the following publication:
Kapoor, V., M. Elk, X. Li, C. Impellitteri , and J. Santodomingo. Effects of Cr(III) and CR(VI) on nitrification inhibition as determined by SOUR, function-specific gene expression and 16S rRNA sequence analysis of wastewater nitrifying enrichments.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 147: 361-367, (2016).

Tags: nitrification, rna
Organization: U.S. Environmental Protection Agency
Towards Universal Screening for Toxoplasmosis: Rapid, Cost-effective and Simultaneous Detection of Toxoplasma Anti-IgG, IgM and IgA Antibodies Using Very Small Serum Volumes

No dataset associated with this publication. This dataset is not publicly accessible because: This is a commentary and no data was generated. It can be accessed through the following means: There is no data associated with this commentary. Format: This is a commentary and no data was generated. 

This dataset is associated with the following publication:
Augustine, S. Towards Universal Screening for Toxoplasmosis: Rapid, Cost-effective and Simultaneous Detection of Toxoplasma Anti-IgG, IgM and IgA Antibodies Using Very Small Serum Volumes.   JOURNAL OF CLINICAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, USA, 56(7): 1-2, (2016).

Tags: commentary, toxoplasma-gondii, universal-screening
Organization: U.S. Environmental Protection Agency
Database to support "Quanitfying groundwater dependency of riparian surface hydrologic features using the exit gradient" by Faulkner et al. 2016.

Collections of publically available secondary data used to develop the conclusions described in the journal article. 

This dataset is associated with the following publication:
Faulkner , B., S. Leibowitz , T. Canfield , and J. Groves. Quantifying groundwater dependency of riparian surface hydrologic features using the exit gradient.   Hydrological Processes. John Wiley & Sons, Ltd., Indianapolis, IN, USA,  1-11, (2015).

Tags: basin-fill-aquifer, exit-gradient, exit-gradient-basin-fill-aquifer-shallow-groundwater-management-wetland-management-groundwater-, groundwater-dependency-of-ecosystem-services, shallow-groundwater-management, wetland-management
Organization: U.S. Environmental Protection Agency
Supplemental Information: Phototransformation-Induced Aggregation of Functionalized Single-Walled Carbon Nanotubes: the Importance of Amorphous Carbon

Additional information about the carboxylated SWCNT calibration curve, AFM images, EDS results, solar simulator light and UVB lamp spectra, TEM image of
parent carboxylated SWCNTs, XPS spectra of the dark control P3 sample and the irradiated P3 sample, and a table summarizing the kinetic parameters (PDF). 

This dataset is associated with the following publication:
Hou, W., C. He, Y. Wang, D. Wang, and R. Zepp. Phototransformation-Induced Aggregation of Functionalized Single-Walled Carbon Nanotubes: The Importance of Amorphous Carbon.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 50(7): 3494–3502, (2016).

Tags: afm-images, amorphous-carbon, calibration-curve, eds-results, kinetic-parameters, lamp-spectra, nanomaterials, phototransformations, swcnts, tem-image, xps-spectra
Organization: U.S. Environmental Protection Agency
Figure12

NCL script: cmaq_ensemble_isam_4panels_subdomain.ncl

Netcdf input file for NCL script, containing ensemble means and standard deviation of ISAM SO4 and O3 contributions from IPM: test.nc

Plot (ps): maps_isam_mean_std_lasthour_ipm_so4_o3_east.ps

Plot (pdf): maps_isam_mean_std_lasthour_ipm_so4_o3_east.pdf

Plot (ncgm): maps_isam_mean_std_lasthour_ipm_so4_o3_east.ncgm. This dataset is not publicly accessible because: This contains a dataset that is well over 1Gb, so link provided to US EPA's HPC system where all information can be retrieved. It can be accessed through the following means: /asm/grc/JGR_ENSEMBLE_ScienceHub/Figure12.tar.gz. Format: Tar file with scripts and datasets needed to reproduce Figure 12. 

This dataset is associated with the following publication:
Gilliam , R., C. Hogrefe , J. Godowitch, S. Napelenok , R. Mathur , and S.T. Rao. Impact of inherent meteorology uncertainty on air quality model predictions.   JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES. American Geophysical Union, Washington, DC, USA, 120(23): 12,259–12,280, (2015).

Tags: cmaq-isam, ensemble-modeling, o3, ozone, probabilistic-modeling, source-attribution, wrf-cmaq
Organization: U.S. Environmental Protection Agency
New England observed and predicted median July stream/river temperature points

The shapefile contains points with associated observed and predicted median July stream/river temperatures in New England based on a spatial statistical network model published in Detenbeck et al. (2016): Raw stream/temperature data were received from a variety of state agencies, watershed organizations, and Federal agencies (see Detenbeck et al. 2016 for complete list: Detenbeck, N. E., Morrison, A., Abele, R. W. and Kopp, D. (2016), Spatial statistical network models for stream and river temperature in New England, USA. Water Resour. Res. Accepted Author Manuscript. doi:10.1002/2015WR018349). This dataset is not publicly accessible because: The dataset is being made available as part of a collection of stream/river temperature model results through EPA's Estuary Data Mapper (publically available application at www.epa.gov/edm for discovering, viewing and accessing geospatial data). It can be accessed through the following means: The dataset is being made available as part of a collection of stream/river temperature model results through EPA's Estuary Data Mapper (publically available application at www.epa.gov/edm for discovering, viewing and accessing geospatial data). Format: Shapefile. 

This dataset is associated with the following publication:
Detenbeck , N., A. Morrison, R. Abele , and D. Kopp. Spatial statistical network models for stream and river temperature in New England, USA.   WATER RESOURCES RESEARCH. American Geophysical Union, Washington, DC, USA, 52: 6018–6040, (2016).

Tags: aquatic-biota, green-infrastrucutre, habitat, july, new-england, rivers, spatial-statistical-network-model, stormwater, streams, water-temperature
Organization: U.S. Environmental Protection Agency
Figure11

R script: ensemble_rrf_sigma_vs_mean_play.R
Data: ensemble_mean_sigma_rrf_allgrids_epismax_new_13runs.csv
Plot: boxplot_ensemble_rrf_sigma_vs_mean_nowater_new_13runs_epimax.pdf. 

This dataset is associated with the following publication:
Gilliam , R., C. Hogrefe , J. Godowitch, S. Napelenok , R. Mathur , and S.T. Rao. Impact of inherent meteorology uncertainty on air quality model predictions.   JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES. American Geophysical Union, Washington, DC, USA, 120(23): 12,259–12,280, (2015).

Tags: emissions-reduction, ensemble-modeling, ozone, probabilistic-modeling, rrf, wrf-cmaq
Organization: U.S. Environmental Protection Agency
Figure10

Fortran/NCARgraphics program to compute and plot RRF mean and variability:map_rrf_variability_13runs_epimax.f

Ioapi files needed by Fortran/NCARGraphics code:
CMAQ.CONC.SREF.June2011.New.13runs.o3_8hrdm
CMAQ.CONC.SREF.June2011.N50V25.New.13runs.o3_8hrdm
GRIDCRO2D_060607

Plotting routines 
map_rrf_mean_sigma_ne_13runs_epimax.ps
map_rrf_mean_sigma_ne_13runs_epimax.ncgm. 

This dataset is associated with the following publication:
Gilliam , R., C. Hogrefe , J. Godowitch, S. Napelenok , R. Mathur , and S.T. Rao. Impact of inherent meteorology uncertainty on air quality model predictions.   JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES. American Geophysical Union, Washington, DC, USA, 120(23): 12,259–12,280, (2015).

Tags: emissions-reductions, ensemble-modeling, o3, ozone, probabilistic-modeling, relative-response-factor, vocs, wrf-cmaq
Organization: U.S. Environmental Protection Agency
Effect of genetic strain and gender on age-related changes in body composition of the laboratory rat.

Body composition data for common laboratory strains of rat as a function of age. 

This dataset is associated with the following publication:
Gordon , C., K. Jarema , A. Johnstone , and P. Phillips. Effect of Genetic Strain and Gender on Age-Related Changes in Body Composition of the Laboratory Rat.   Physiology & Behavior. Elsevier B.V., Amsterdam,  NETHERLANDS, 153(1): 56-63, (2016).

Tags: aging, body-composition, gender, genetic-strain
Organization: U.S. Environmental Protection Agency
Data submission for A-gf27

Biomarker genes used to predict AhR activity; accession numbers of microarray datasets used in the study. 

This dataset is associated with the following publication:
Oshida, K., N. Vasani, W. Ward , R. Thomas , D. Applegate, F. Gonzalez, L. Aleksunes, C. Klaassen, and C. Corton. Screening a mouse liver gene expression Compendium Identifies Effectors of the Aryl Hydrocarbon reeptors (AhR).   TOXICOLOGICAL SCIENCES. Society of Toxicology,    336: 99-112, (2015).

Tags: aryl-hydrocarbon-receptor, biomarker-genes, constitutive-activated-receptor-car, liver-cancer, microarray, microarray-accession-numbers, peroxisome-proliferator-activated-receptor-alpha, pregnane-x-receptor-pxr, transcriptomics
Organization: U.S. Environmental Protection Agency
Data submission for A-0k6f

List of biomarker genes used to predict estrogen receptor activity in MCF-7 cells; list of microarray accession numbers used in the study. 

This dataset is associated with the following publication:
Vanduyn, N., B. Chorley , R. Tice, R. Judson , and C. Corton. Moving Toward Integrating Gene Expression Profiling into High-throughput Testing:A Gene Expression Biomarker Accurately Predicts Estrogen Receptor α Modulation in a Microarray Compendium.   TOXICOLOGICAL SCIENCES. Society of Toxicology,    151(1): 88-103, (2016).

Tags: biomarker-genes, endocrine-disruption, estrogen-receptor, microarray, microarray-accession-numbers, transcriptomics
Organization: U.S. Environmental Protection Agency
Data submission for A-p8dg

Accession numbers for microarray datasets used in Oshida et al. Chemical and Hormonal Effects on STAT5b-Dependent Sexual Dimorphism of the Liver Transcriptome.  PLoS One. 2016 Mar 9;11(3):e0150284. 

This dataset is associated with the following publication:
Oshida, K., D. Waxman, and C. Corton. Chemical and Hormonal Effects on STAT5b-Dependent Sexual Dimorphism of the Liver Transcriptome..   PLoS ONE. Public Library of Science, San Francisco, CA, USA, 11(3): NA, (2016).

Tags: aryl-hydrocarbon-receptor, constitutive-activated-receptor-car, growth-hormone, hypothalamic-pituitary-liver-axis, microarray-accession-numbers, peroxisome-proliferator-activated-receptor-alpha, stat5b, transcriptomics
Organization: U.S. Environmental Protection Agency
Data submission for A-d25f

Includes 1) list of genes in the STAT5b biomarker and 2) list of accession numbers for microarray datasets used in study. 

This dataset is associated with the following publication:
Oshida, K., N. Vasani, D. Waxman, and C. Corton. Disruption of STAT5b-Regulated Sexual Dimorphism of the Liver Transcriptome by Diverse Factors Is a Common Event.   PLoS ONE. Public Library of Science, San Francisco, CA, USA, 11(3): NA, (2016).

Tags: androgens, estrogens, list-of-stat5b-biomarker-genes, liver-cancer, microarray-accession-numbers, stat5b, transcriptomics
Organization: U.S. Environmental Protection Agency
In vivo plasma concentration for lindane after 6 hour exposure in human skin

Dataset is a time course description of lindane disappearance in blood plasma after dermal exposure in human volunteers. 

This dataset is associated with the following publication:
Sawyer, M.E., M.V. Evans , C. Wilson, L.J. Beesley, L. Leon, C. Eklund , E. Croom, and R. Pegram. Development of a Human Physiologically Based Pharmacokinetics (PBPK) Model For Dermal Permeability for Lindane.   TOXICOLOGY LETTERS. Elsevier Science Ltd, New York, NY, USA, 14(245): pp106-109, (2016).

Tags: dermal-cumulative-absorption, dermal-diffusion, dermal-lag-time, dermal-permeation, expocast, human, in-vivo, lindane, pbpk, toxcast
Organization: U.S. Environmental Protection Agency