Functional annotation for 15 diverse arthropod genomes

<p>We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of insect proteomes and apply it to a diverse range of arthropod species. You can find more information about the pipeline at our <a href="https://agbase-docs.readthedocs.io/en/latest/agbase/workflow.html">readthedocs </a> site. The files for each genome include GOanna, InterproScan and KOBAS predictions. </p>
<p><i><strong> Arthropod genomes selected for this study and their assembly and annotation statistics.</strong></i> </p>
<ol>
<li><i>Apis Mellifera</i> (honey bee)</li>
<li><i>Drosophila melanogaster</i> (fruit fly)</li>
<li><i>Tribolium castaneum</i> (red flour beetle)</li>
<li><i>Latrodectus hesperus</i> (Western black widow spider)</li>
<li><i>Limnephilus lunatus</i> (caddisfly)</li>
<li><i>Oncopeltus fasciatus</i> (Large milkweed bug)</li>
<li><i>Homalodisca vitripennis</i> (Glassy-winged sharpshooter)</li>
<li><i>Eurytemora affinis</i> (calanoid copepod)</li>
<li><i>Agrilus planipennis</i> (emerald ash borer)</li>
<li><i>Copidosoma floridanum</i> (parasitoid wasp)</li>
<li><i>Athalia rosae</i> (turnip sawfly)</li>
<li><i>Ceratitis capitata</i> (Mediterranean fruit fly)</li>
<li><i>Cimex lectularius</i> (Cimicidae bed bug)</li>
<li><i>Varroa destructor</i>(parasitic mite)</li>
<li>
<p><i>Diaphorina citri</i> (Asian citrus psyllid)</p>
<div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Cimex lectularius (Cimicidae bed bug) annotation.</p> <p>File Name: CLEC.tar.gz</p><p>Resource Description: Functional annotation for Clec-OGSv1.2 protein set</p></li><br><li><p>Resource Title: Tribolium castaneum (red flour beetle) annotation.</p> <p>File Name: TCAS.tar.gz</p><p>Resource Description: Functional annotation for TCAS_OGS_v3 protein set</p></li><br><li><p>Resource Title: Drosophila melanogaster (fruit fly) annotation.</p> <p>File Name: DMEL.tar.gz</p><p>Resource Description: Functional annotation for DMEL_r6.38 protein set
</p></li>
</ul></li></ol>
<p></p><br><li><p>Resource Title: Varroa destructor (parasitic mite) annotation.</p> <p>File Name: VDES.tar.gz</p><p>Resource Description: Functional annotation for NCBI Varroa destructor Annotation Release 100 protein set based on Vdes_3.0 genome (GCA_002443255.1)</p>
<p></p></li><br><li><p>Resource Title: Oncopeltus fasciatus (Large milkweed bug) annotation.</p> <p>File Name: ONCFAS.tar.gz</p><p>Resource Description: Functional annotation for oncfas_OGSv1.2 protein set</p></li><br><li><p>Resource Title: Apis Mellifera (honey bee) annotation.</p> <p>File Name: AMEL.tar.gz</p><p>Resource Description: Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (GCA_000002195.1)</p>
<p></p></li><br><li><p>Resource Title: Homalodisca vitripennis (Glassy-winged sharpshooter) annotation.</p> <p>File Name: HVIT.tar.gz</p><p>Resource Description: Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1.0 genome (GCA_000696855.1)
</p></li><br><li><p>Resource Title: Limnephilus lunatus (caddisfly) annotation.</p> <p>File Name: LLUN.tar.gz</p><p>Resource Description: Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0 genome (GCA_000648945.1)</p>
<p></p></li><br><li><p>Resource Title: Latrodectus hesperus (Western black widow spider) annotation.</p> <p>File Name: LHES.tar.gz</p><p>Resource Description: Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0 genome (GCA_000697925.1)</p>
<p></p></li><br><li><p>Resource Title: Eurytemora affinis (calanoid copepod) annotation.</p> <p>File Name: EAFF.tar.gz</p><p>Resource Description: Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0 genome (GCA_000591075.1)
</p></li><br><li><p>Resource Title: Copidosoma floridanum (parasitoid wasp) annotation.</p> <p>File Name: CFLO.tar.gz</p><p>Resource Description: Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1.0 genome (GCA_000648655.1)
</p></li><br><li><p>Resource Title: Ceratitis capitata (Mediterranean fruit fly) annotation.</p> <p>File Name: CCAP.tar.gz</p><p>Resource Description: Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly (GCA_000347755.2)</p>
<p></p></li><br><li><p>Resource Title: Athalia rosae (turnip sawfly) annotation.</p> <p>File Name: AROS.tar.gz</p><p>Resource Description: Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1.0 genome (GCA_000344095.1)</p></li><br><li><p>Resource Title: Agrilus planipennis (emerald ash borer) annotation.</p> <p>File Name: APLA.tar.gz</p><p>Resource Description: Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1.0 genome (GCA_000699045.1)</p></li><p></p>

Tags: ars, data-gov, functional-annotation, gene-annotation, gene-ontology, pathways
Organization: Department of Agriculture