AndreaBozzo/ceres-open-data-index huggingface dataset:
Literature review results and regulatory summaries of freshwater stressors influencing biological impairment in the Chesapeake Bay watershed, USA

This data release contains relevant datasets used in the analysis for the Chesapeake Bay stressor identification project, for which results are described in Fanelli and others (in review). For this project, two existing information sources were compiled and summarized to identify key in-stream stressors reported by the scientific literature or through regulatory assessments to be likely affecting benthic macroinvertebrate community metrics in the Chesapeake Bay region: 1) the peer reviewed multi-stressor literature, in which the effects multiple in-stream stressors on benthic macroinvertebrate community metrics are simultaneously assessed; and 2) reported causes of biological impairment as listed by state or district regulatory agencies in the Environmental Protection Agency's Assessment and Total Maximum Daily Load Tracking and Implementation System (ATTAINS). 
This data release contains three child items: 
1) "Data from the Assessment, Total Maximum Daily Load (TMDL) Tracking and Implementation System (ATTAINS) for evaluating multiple stressors affecting Chesapeake Bay Watershed rivers and streams": The ATTAINS dataset is for the Chesapeake Bay region, which was summarized for the jurisdictional impairment analysis (jurisdictions include the states of Maryland, Pennsylvania, Virginia, West Virginia, New York, and Delaware, as well as the District of Columbia). This compiled dataset contains information on a waterbody's Designated Uses, parameter impairments, and potential sources of that impairment. 
2) "Multi-stressor literature summary information for Chesapeake Bay stressor identification project": A summary table of the peer-reviewed literature that was considered for the literature review meta-analysis. This dataset includes basic identifying information regarding the report, geographic location of the study, type of field study, the major source or driver that was the focus of the study, and which in-stream stressors were measured. 
3) "Results from the literature review meta-analysis for the Chesapeake Stressor Identification Project": The results from the literature review meta-analysis. The dataset includes basic identifying information regarding the report, the response metric for which results were reported, the major source or driver that was the focus of the study, and whether or not the study found the stressor to be important.

Tags: alabama, austria, biota, canada, chesapeake-bay-watershed, colorado, connecticut, delaware, district-of-columbia, environment, freshwater-ecosystems, georgia, illinois, indiana, inlandwaters, maine, maryland, massachusetts, michigan, missouri, nebraska, new-hampshire, new-jersey, new-york, new-zealand, north-carolina, ohio, oregon, pennsylvania, portugal, south-carolina, spain, tennessee, texas, united-kingdom, united-states, usgs-626aedf8d34e76103cd18296, virginia, washington, water-quality, west-virginia, wisconsin
Organization: Department of the Interior
Sequence Information from the Mitogenome and Four Nuclear Genes from Holarctic Ermine (Mustela spp.)

These data are comprised of two tables, one of primers used for PCR amplifications and the other containing North American (n = 105), Mongolian (n = 1) and Russian (n = 5) ermine (Mustela spp.) sample accessions and NCBI GenBank DNA sequence accessions for mitogenomes and four nuclear genes (agouti signaling protein [ASIP], feline sarcoma [FES], growth hormone receptor [GHR], and serotonin receptor 1b [HTR1B]). All samples were obtained from collections at the University of Alaska Museum of the North or the University of New Mexico’s Museum of Southwestern Biology.

Tags: animal-morphology, animals-vertebrates, biota, carnivores, dna, dna-mitochondrial, dna-primers, dna-sequencing, environment, evolutionary-genetics, genetics, mammals, martens-weasels-wolverines, mustela-erminea, mustela-erminea-cicognanii, mustela-erminea-salva, mustela-haidarum, mustela-richardsonii, polymerase-chain-reaction, systematics-and-taxonomy, terrestrial-ecosystems, usgs-asc359, wildlife
Organization: Department of the Interior
Scripts and data to run R-QWTREND models and produce results

This child page contains a zipped folder which contains all items necessary to run trend models and produce results published in U.S. Geological Scientific Investigations Report 2021–XXXX [Tatge, W.S., Nustad, R.A., and Galloway, J.M., 2021, Evaluation of Salinity and Nutrient Conditions in the Heart River Basin, North Dakota, 1970-2020: U.S. Geological Survey Scientific Investigations Report 2021-XXXX, XX p.]. To run the R-QWTREND program in R 6 files are required and each is included in this child page: prepQWdataV4.txt, runQWmodelV4XXUEP.txt, plotQWtrendV4XXUEP.txt, qwtrend2018v4.exe, salflibc.dll, and StartQWTrendV4.R (Vecchia and Nustad, 2020). The folder contains: six items required to run the R–QWTREND trend analysis tool; a readme.txt file; a  flowtrendData.RData file; an allsiteinfo.table.csv file, a folder called "scripts", and a folder called "waterqualitydata". The "scripts" folder contains the scripts that can be used to reproduce the results found in the USGS Scientific Investigations Report referenced above. The "waterqualitydata" folder contains .csv files with the naming convention of site_ions or site_nuts for major ions and nutrients constituents and contains machine readable files with the water-quality data used for the trend analysis at each site. R–QWTREND is a software package for analyzing trends in stream-water quality. The package is a collection of functions written in R (R Development Core Team, 2019), an open source language and a general environment for statistical computing and graphics. The following system requirements are necessary for using R–QWTREND: • Windows 10 operating system • R (version 3.4 or later; 64 bit recommended) • RStudio (version 1.1.456 or later). An accompanying report (Vecchia and Nustad, 2020) serves as the formal documentation for R–QWTREND. 
Vecchia, A.V., and Nustad, R.A., 2020, Time-series model, statistical methods, and software documentation for R–QWTREND—An R package for analyzing trends in stream-water quality: U.S. Geological Survey Open-File Report 2020–1014, 51 p., https://doi.org/10.3133/ofr20201014 
R Development Core Team, 2019, R—A language and environment for statistical computing: Vienna, Austria, R Foundation for Statistical Computing, accessed December 7, 2020, at https://www.r-project.org.

Tags: datasets, heart-river, north-dakota, streamflow, usgs-615cce0dd34e7b019242b96c, water-quality
Organization: Department of the Interior
Airborne geophysical survey: Bighorn, California

Aeromagnetic data were collected along flight lines by instruments in an
aircraft that recorded magnetic-field values and locations.  This dataset
presents latitude, longitude, altitude, and magnetic-field values.

Tags: aeromagnetic-data, aeromagnetic-surveying, airborne-surveys, bighorn, ca, california, f06065-riverside, f06071-san-bernardino, field-monitoring-stations, geophysical-surveys, geophysics, geospatial-datasets, magnetic, magnetic-field-earth, magnetic-surveys, residual-magnetic-field, total-field, united-states, usgs-2118e5d1-a285-4be0-9606-bdd5bf620b5b
Organization: Department of the Interior
Survey lines along which EdgeTech SB-512i and SB-424 chirp seismic-reflection data were collected by the U.S. Geological Survey offshore of Massachusetts between Duxbury and Hull (DH_SeismicTrackline shapefile, Geographic, WGS84)

These data were collected under a cooperative agreement with the Massachusetts Office of Coastal Zone Management (CZM) and the U.S. Geological Survey (USGS), Coastal and Marine Geology Program, Woods Hole Science Center (WHSC). Initiated in 2003, the primary objective of this program is to develop regional geologic framework information for the management of coastal and marine resources. Accurate data and maps of sea-floor geology are important first steps toward protecting fish habitat, delineating marine resources, and assessing environmental changes due to natural or human impacts. The project is focused on the inshore waters (5-30 m deep) of Massachusetts between the New Hampshire border and Cape Cod Bay. Data collected for the mapping cooperative have been released in a series of USGS Open-File Reports (http://woodshole.er.usgs.gov/project-pages/coastal_mass/html/current_map.html). This spatial dataset is from the study area located between Duxbury and Hull Massachusetts, and consists of high-resolution geophysics (bathymetry, backscatter intensity, and seismic reflection) and ground validation (sediment samples, video tracklines and bottom photographs). The data were collected during four separate surveys conducted between 2003 and 2007 (NOAA survey H10993 in 2003, USGS-WHSC survey 06012 in 2006, and USGS-WHSC surveys 07001 and 07003 in 2007) and cover more than 200 square kilometers of the inner continental shelf.

Tags: 2006, 2007, 424, 512i, atlantic-ocean, boston-south-shore, brant-rock, cape-cod-bay, chirp, cmgp, coastal-and-marine-geology-program, duxbury-bay, duxbury-beach, edgetech, geospatial-datasets, hull-bay, location, marine-geology, marine-geophysics, marshfield, massachusetts, massachusetts-bay, nantasket-beach, navigation-tracklines, navigational-data, north-america, oceans, r-v-megan-t-miller, r-v-rafael, scituate, sea-floor, seafloor, seismic-navigation, seismic-profile, seismic-reflection, subsurface, u-s-geological-survey, united-states, usgs, usgs-7d09df56-5ef7-4197-bba5-141b52aa3df4, whsc, whsc-field-activity-serial-number-06012, whsc-field-activity-serial-number-07001, woods-hole-science-center
Organization: Department of the Interior
Dauphin Island Decadal Forecast Evolution Model Inputs and Results: Final DEMs with restoration alternative 2 that extends Pelican Island simulated with ST2_SL1 and ST3_SL3 scenarios

The model input and output of topography and bathymetry values resulting from forecast simulations of coupled modeling scenarios occurring between 2015 and 2025 at Dauphin Island, Alabama, and described in U.S. Geological Survey (USGS) Open-File Report 2020–1001 (https://doi.org/10.3133/ofr20201001), are provided here. For further information regarding model input generation and visualization of model output topography and bathymetry, refer to Mickey and others (2020).

Tags: alabama, alongshore-transport, barrier-island, bathymetry, coastal, coastal-processes, dauphin-island, decadal, dem, digital-elevation-models, elevation, geomorphology, geoscientificinformation, gulf-of-mexico, marine-geology, morphologic-change, north-america, ocean-waves, oceans, sea-level-change, sediment-transport, spcmsc, st-petersburg-coastal-and-marine-science-center, tides-oceanic, topography, u-s-geological-survey, united-states, usgs, usgs-9db5c5e6-5bbc-4fa7-a204-66d06c878a2c
Organization: Department of the Interior
Coastwide Reference Monitoring System (CRMS) 2005, 2008, 2012, and 2016 Site 0237 land-water matrix

Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in Louisiana rely on monitoring efforts to determine the efficacy of these efforts. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum. As part of CRMS, land and water classifications are created from Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection, and Restoration Act (CWPPRA) in Louisiana rely on monitoring efforts to determine the efficacy of these efforts. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum. As part of CRMS, land and water classifications are created from Digital Orthophoto Quarter Quadrangles (DOQQs) approximately every three years at all CRMS sites. This dataset consists of a matrix of four land-water products (2005, 2008, 2012, and 2016).  The resulting matrix has 16 possible classes defined by the combination of land and water categories on those four dates.

Tags: alteration-of-wetland-habitats, cartography, coastal, crms, doqq, emergent-wetland, forested-wetland, geographic-information-system, imagerybasemapsearthcover, land-water, louisiana, mapping, marsh, protection, restoration, scrub-shrub-wetland, state-of-louisiana, usgs-5b631a14e4b006a11f717764, wetland, wetland-ecosystems, wetlands
Organization: Department of the Interior
Forage Fish Size, Age, and Energy Density Data from Prince William Sound, Alaska

One table with age, total length, weight, dry mass energy density, and dry mass of forage fish (Pacific sand lance and capelin) captured in July in Prince William Sound, Alaska.

Tags: age-composition, alaska, animals-vertebrates, bioenergetics, biota, calorimetry, capelin, coastal-ecosystems, environment, fish, fisheries, food-web, forage-fish, gulf-of-alaska, marine-ecosystems, marine-fishery-resources, oceans, pacific-sand-lance, pelagic-habitat, prince-william-sound, sandlance, usgs-asc347
Organization: Department of the Interior
CE-QUAL-W2 models for the Willamette River and major tributaries downstream of U.S. Army Corps of Engineers dams: 2011, 2015, and 2016

In the Willamette River Basin in northwestern Oregon, stream temperature has been altered by 13 dams operated by the U.S. Army Corps of Engineers (USACE), negatively influencing threatened populations of native salmonids.  CE-QUAL-W2, a two-dimensional, hydrodynamic water quality model, has been used to investigate temperature and heat patterns in the Willamette River and the downstream effects of dam operations and other anthropogenic effects on heat and stream temperature.  This data release includes the input and output files for six CE-QUAL-W2 models that include Fall Creek downstream of Fall Creek Dam, the Row River downstream of Dorena Dam, the Coast Fork Willamette River downstream of Cottage Grove Dam, the Middle Fork Willamette River downstream of Dexter Dam, the South Fork McKenzie River downstream of Cougar Dam, the McKenzie River downstream of the South Fork McKenzie River confluence, the South Santiam River downstream of Foster Dam, the North Santiam River downstream of Big Cliff Dam, the Santiam River, and the Willamette River as far downstream as Willamette Falls (river mile 26.8) near Oregon City. The models, built by other researchers in the early 2000s to simulate portions of 2001 and 2002, were upgraded to CE-QUAL-W2 version 4.2 with additional USGS modifications to trace heat, water sources, and provide additional outputs.  Models are set up to run from late March through October of 2011, 2015, and 2016.  Model scenarios documented in this data release were used to investigate the downstream impacts of flow augmentation from various upstream dams.

Tags: benton-county, ce-qual-w2-model, clackamas-county, coast-fork-willamette-river, environment, fall-creek, inlandwaters, lane-county, linn-county, marion-county, mckenzie-river, middle-fork-willamette-river, north-santiam-river, oregon, polk-county, row-river, south-fork-mckenzie-river, south-santiam-river, surface-water-quality, usgs-602ff235d34eb1203115c752, water-temperature, willamette-river, yamhill-county
Organization: Department of the Interior
Coral species and size data by transect, West Hawaii, 2011

Observations of coral species and size were documented by scuba divers along pre-determined transects and are presented here in comma-separated format.

Tags: assessments, cmhrp, coastal-and-marine-hazards-and-resources-program, corals, distributions, diving, freeze-face, habitat, hawaii, health-and-disease, honaunau-bay, honokohau-small-boat-harbor, island-of-hawaii, kailua-kona, kailua-pier, kaloko-cut, kaloko-honokohau-national-historical-park, keawaiki, kona, oceans, pacific-coastal-and-marine-science-center, pcmsc, reef-ecosystems, sampling, state-of-hawaii, u-s-geological-survey, usgs, usgs-59b1954ce4b020cdf7d957d6
Organization: Department of the Interior
Estimated crop irrigation water use withdrawals in Hualapai Valley Groundwater Basin, Arizona for 2022

Observations of irrigated agricultural land within the Hualapai Valley Groundwater Basin in Arizona. Digitized field boundaries were used to locate crops for in situ verification once in 2022; crop verification occurred on June 2nd. Field boundaries were digitized from U.S. Department of Agriculture, National Agricultural Imagery Program County Mosaic 2021 imagery for Arizona and supplemented with Landsat and Sentinel2 imagery collections accessed via the Sentinel Hub, Sentinel Playground (https://apps.sentinel-hub.com/sentinel-playground). Satellite images were also used to identify the length of the growing season and crop condition. Water withdrawals were calculated using the modified Blaney-Criddle model of calculating consumptive use (U.S. Bureau of Reclamation, 1992 appendix A) using crop coefficients from Doorenbos and Pruitt (1975), the number of acres with active crops, crop condition, and irrigation system efficiency. The withdrawal equation was modified from "Water withdrawals for irrigation, municipal, mining, thermoelectric-power, and drainage uses in Arizona outside of active management areas, 1991-2000" (Tadayon, 2005) to account for variations in water application.

Tags: agricultural-sites, arizona, groundwater, hualapai-valley-groundwater-basin, irrigation, mohave, usgs-64920eb0d34ef77fcb004e3f, water-use
Organization: Department of the Interior
CoSMoS (Coastal Storm Modeling System) Central California v3.1 wave-hazard projections: average conditions in San Francisco County

This data contains maximum model-derived significant wave height (in meters) for the sea-level rise (SLR) and storm condition indicated. 
The Coastal Storm Modeling System (CoSMoS) makes detailed predictions (meter-scale) over large geographic scales (100s of kilometers) of storm-induced coastal flooding and erosion for both current and future sea-level rise (SLR) scenarios. Projections for CoSMoS v3.1 in Central California include flood-hazard information for the coast from Pt. Conception to the Golden Gate. Outputs include SLR scenarios of 0.0, 0.25, 0.5, 0.75, 1.0, 1.5, 2.0, 2.5, 3.0, and 5.0 meters; storm scenarios include background conditions (astronomic spring tide and average atmospheric conditions) and simulated 1-year/20-year/100-year return interval coastal storms. Methods and processes used in Central California are replicated from and described in O'Neill and others (2018). Please read metadata and inspect output carefully.  Data are complete for the information presented.
      

Tags: beaches, central-california, central-california-coast, climate-change, climatologymeteorologyatmosphere, cmhrp, coastal-and-marine-hazards-and-resources-program, coastal-erosion, earth-sciences, effects-of-climate-change, erosion, extreme-weather, floods, hazards-planning, mathematical-modeling, ocean-waves, ocean-winds, oceans, pacific-coastal-and-marine-science-center, pcmsc, physical-habitats-and-geomorphology, san-francisco-county, sea-level-change, sea-level-rise, state-of-california, storm-surge, storms, u-s-geological-survey, usgs, usgs-5d84fc39e4b0c4f70d083d97, water-depth, waves, wind
Organization: Department of the Interior
Wind rose plots for the volcano: 266010  Colo

This zip folder contains ASCII text files of vectors at the specified volcano at 
12-hour intervals, 
from January 1, 1990 through December 28, 2009.  
The wind vectors are divided into five files, names by their elevation range above 
sea level in the atmosphere: 00-05km.txt; 05-11km.txt; 11-16km.txt; 16-24km.txt; 
and 24-30km.txt. 
The zip folder also contains a subfolder "figures", with Wind rose plots of wind 
direction and speed over 
this time period.  The plots are by season, and by elevation, given a total of 20 
plots (4 seasons, 5 
elevation ranges).  A summary plot is also included which gives the year-round 
wind pattern at the volcano, 
at 0-5 km elevation.  Plots are in both jpg and pdf format.

Tags: meteorology, usgs-58d0129ce4b0236b68f52bbf, volcanic-ash, volcanic-eruption-forecasting, wind
Organization: Department of the Interior
DS926 Digital surfaces and thicknesses of selected hydrogeologic units of the Floridan aquifer system in Florida and parts of Georgia, Alabama, and South Carolina -- Raster surface depicting top of the Lower Floridan aquifer

Digital surfaces and thicknesses of selected hydrogeologic units of the Floridan aquifer system 
were developed to define an updated hydrogeologic framework as part of the U.S. Geological 
Survey Groundwater Resources Program. This feature class contains a gridded surface 
depicting the top of the Lower Floridan aquifer in feet relative to NGVD29.

Tags: alabama, altitude, environment, florida, floridan-aquifer-system, geology, georgia, geoscientificinformation, gridded-surface, hydrogeology, inlandwaters, lf, lower-floridan, raster, regional, regional-groundwater-availability-study, regions, south-carolina, stratigraphy, top, united-states-geological-survey, usgs, usgs-801fedfa-7c9d-4be3-9689-3b824f572723
Organization: Department of the Interior
Daily rainfall collected at Caño Boquerón, Cabo Rojo and Puerto Mosquito, Isla de Vieques, Puerto Rico, July 1, 2015 to July 28, 2016

The dataset includes daily rainfall collected at Puerto Mosquito, Isla de Vieques and Caño Boquerón, Cabo Rojo, Puerto Rico from July 1, 2015 to July 28, 2016. Two rain gages were installed at: 1) USGS stations: 50129935 - Caño Boquerón No. 3, and 2) 50231500 - Laguna Bahía Puerto Mosquito No. 1. Site inspections of both rain gages occurred at 6-weeks intervals. Further details regarding the calibration, equipment, and data processing are available in the USGS National Information System (NWIS).

Tags: bahia-de-boqueron, cabo-rojo, precipitation-atmospheric, puerto-mosquito, rainfall, runoff, usgs-5a20105fe4b09fc93ddb2dd0, vieques
Organization: Department of the Interior
Cottonwood Lake Study Area Invertebrate Data - Weights

This dataset contains macroinvertebrate sampling data (weights) for wetlands in the Cottonwood Lake Study Area, Stutsman County, North Dakota.

Tags: biota, chase-lake-wetland-management-districtgtstutsman-county-waterfowl-production-areagteddy, chase-lake-wetland-management-districtgtstutsman-county-waterfowl-production-areagtshuler, community-composition, cottonwood-lake-study-area, freshwater-ecosystems, macroinvertebrates, north-dakota, northern-great-plains, prairie-pothole-region, stutsman-county, united-states-of-america, usgs-5a2fe846e4b08e6a89d57a4b
Organization: Department of the Interior
Zircon U-Pb data for Proterozoic rocks in southwestern Colorado and rocks from drill core from Wyoming, Montana, and Nebraska

This U.S. Geological Survey (USGS) data release provides U-Pb zircon data and geochronology for Proterozoic rocks in the Needle Mountains of southwestern Colorado and for Proterozoic rocks sampled from drill cores from Wyoming, Montana, and Nebraska. Samples from the Needle Mountains were collected in order to constrain the polyphase tectonic evolution of the area. Drill core samples are part of a larger characterization of the age and geochemical character of basement terranes in the United States.

Tags: colorado, geologic-framework-of-the-intermountain-west, geology-geophysics-and-geochemistry-science-center, geosciences-and-environmental-change-science-center, geoscientificinformation, la-icp-ms, montana, ncgmp, nebraska, precambrian-basement-terranes, u-pb-geochronology, us-geological-survey, usgs-63c184d7d34e92aad3d06682, wyoming
Organization: Department of the Interior