AndreaBozzo/ceres-open-data-index huggingface dataset:
Ecosystem services in the St. Louis River AOC

Dataset indicates the presence or absence of each ecosystems service at each coordinate Location. Also included are depth, fetch, and aquatic vegetation data. See supporting information for SAS code used to process data, sources of public spatial data, logic of GIS models used to generate presence absence assignments, GIS processing metadata, and KMZ maps (zipped file). 

This dataset is associated with the following publication:
Angradi , T., J. Launspach, D. Bolgrien , B. Bellinger, M. Starry, J. Hoffman , A. Trebitz , M. Sierszen , and T. Hollenhorst. Mapping ecosystem service indicators in a Great Lakes estuarine Area of Concern.   JOURNAL OF GREAT LAKES RESEARCH. International Association for Great Lakes Research, Ann Arbor, MI, USA, 42(3): 717-727, (2016).

Tags: area-of-concern, ecosystem-services, ecosystems-services
Organization: U.S. Environmental Protection Agency
A Reduced Form Model for Ozone Based on Two Decades of CMAQ Simulations for the Continental United States

File containing the locations where the gridded datasets used in the analysis presented in this manuscript are archived. The actual gridded datasets are too large to upload to sciencehub (several terabytes). 

This dataset is associated with the following publication:
Porter, P.S., S.T. Rao, C. Hogrefe, and R. Mathur. A Reduced Form Model for Ozone Based on Two Decades of CMAQ Simulations for the Continental United States.   Atmospheric Pollution Research. Turkish National Committee for Air Pollution Research and Control, Izmir,  TURKEY, 8(2): 275-284, (2017).

Tags: air-quality-trends, emission-trends, long-term-cmaq-modeling, meteorological-adjustment, reduced-form-model
Organization: U.S. Environmental Protection Agency
LenoxKaplan_Role of natural gas in meeting electric sector emissions reduction strategy_dataset

This dataset is for an analysis that used the MARKAL linear optimization model to compare the carbon emissions profiles and system-wide global warming potential of the U.S. energy system over a series of model runs in which the power sector is required to meet a specific carbon dioxide reduction target across a number of scenarios in which the availability of natural gas changes.  Scenarios are run with carbon dioxide emissions and a range of upstream methane emission leakage rates from natural gas production along with upstream methane and carbon dioxide emissions associated with production of coal and oil. 

This dataset is associated with the following publication:
Lenox , C., and O. Kaplan. Role of natural gas in meeting an electric sector emissions reduction strategy and effects on greenhouse gas emissions.   Energy Economics. Elsevier B.V., Amsterdam,  NETHERLANDS, 60: 460-468, (2016).

Tags: air-quality, carbon-emissions, energy, energy-system, greenhouse-gas, markal, methane, modeling, natural-gas, scenario-analysis, systems-analyses
Organization: U.S. Environmental Protection Agency
Excel file of salivary antibody analysis for Boqueron Beach study, Puerto Rico for six waterborne pathogens.

This dataset is the raw Luminex antibody responses to six common waterborne pathogens reported in MFI (Median Fluorescence Intensity) units. 

This dataset is associated with the following publication:
Augustine , S., T. Eason , K. Simmons, C. Curioso, S. Griffin , M. Ramudit, and T. Plunkett. Developing a Salivary Antibody Multiplex Immunoassay to Measure Human Exposure to Environmental Pathogens.   Journal of Visualized Experiments. JoVE, Somerville, MA, USA, 115: e54415, (2016).

Tags: bead-based-multiplexing, bead-coupling, carboxylated-microspheres, coupling-confirmation, exposure, immunoassay, multiplex, saliva, salivary-antibody
Organization: U.S. Environmental Protection Agency
Insights into the deterministic skill of air quality ensembles from the analysis of AQMEII data

This dataset documents the source of the data analyzed in the manuscript " Insights into the deterministic skill of air quality ensembles from the analysis of AQMEII data" led by Dr. Ioannis Kioutsioukis of the European Commission's Joint Research Center. All of the data were contributed by non-EPA research groups from Europe. This dataset is not publicly accessible because: None of the data analyzed in this manuscript was contributed by EPA. It can be accessed through the following means: The datasets used for analysis by the external author of this manuscript were provided by researchers from more than ten non-EPA research groups from Europe participating in the first and second phase of the Air Quality Model Evaluation International Initiative (AQMEII). All data used in the manuscript are stored on the web-based password-protected ENSEMBLE platform hosted by the European Commission’s Joint Research Centre at http://ensemble3.jrc.it/. Interested researchers can request access to the AQMEII dataset hosted on the ENSEMBLE platform by contacting Dr. Stefano Galmarini (stefano.galmarini@jrc.ec.europa.eu). Format: N/A. 

This dataset is associated with the following publication:
Kioutsioukis, I., U. Im, E. Solazzo, R. Bianconi, A. Badia, A. Balzarini, R. Baro, R. Bellasio, D. Brunner, C. Chemel, G. Curci, H. Denier va der Gon, J. Flemming, R. Forkel, L. Giordano, P. Jimenez-Guerrero, M. Hirtl, O. Jorba, A. Manders-Groot, L. Neal, J. Perez, G. Pirovano, R. San Jose, N. Savage, W. Schroder, R. Sokhi, D. Syrakov, P. Tuccella, J. Werhahn, R. Wolke, C. Hogrefe, and S. Galmarini. Insights into the deterministic skill of air quality ensembles from the analysis of AQMEII data.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 16(24): 15629-15652, (2016).

Tags: air-quality-forecasting, aqmeii, ensemble-modeling-ensemble-averaging, model-intercomparison
Organization: U.S. Environmental Protection Agency
Functional Use Database (FUse)

There are five different files for this dataset:
1. A dataset listing the reported functional uses of chemicals (FUse)
2. All 729 ToxPrint descriptors obtained from ChemoTyper for chemicals in FUse
3. All EPI Suite properties obtained for chemicals in FUse
4. The confusion matrix values, similarity thresholds, and bioactivity index for each model.
5. The functional use prediction, bioactivity index, and prediction classification (poor prediction, functional substitute, candidate alternative) for each Tox21 chemical. 

This dataset is associated with the following publication:
Phillips, K., J. Wambaugh, C. Grulke, K. Dionisio, and K. Isaacs. High-throughput screening of chemicals as functional substitutes using structure-based classification models.   GREEN CHEMISTRY. Royal Society of Chemistry, Cambridge,  UK, 19: 1063-1074, (2017).

Tags: alternatives-assement, consumer-products, expocast, functional-use, high-throughput-screening, machine-learning-algorithms, qsar
Organization: U.S. Environmental Protection Agency
Figures

data for figures 1-8 in journal article "Assessment of port-related air quality impacts: geographic analysis of population", International Journal of Environment and Pollution, 58, 231-250, (2015). 

This dataset is associated with the following publication:
Arunachalam , S., H. Brantley , T. Barzyk , G. Hagler , V. Isakov , S. Kimbrough , B. Naess, N. Rice, M. Snyder, K. Talgo, and A. Venkatram. Assessment of port-related air quality impacts: geographic analysis of population.   INTERNATIONAL JOURNAL OF ENVIRONMENT AND POLLUTION. Inderscience Enterprises Limited, Geneva,  SWITZERLAND, 58(4): 231 - 250, (2015).

Tags: air-quality, dispersion-modeling, emissions, exposure, gis, population, ports
Organization: U.S. Environmental Protection Agency
Phoenix Study

Phoenix Traffic and Mobile Data. 

This dataset is associated with the following publication:
Baldauf , R., V. Isakov , P. Deshmukh, and A. Venkatram. Influence of Solid Noise Barriers on Near-Road and On-Road Air Quality.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 129: 265-276, (2016).

Tags: air-quality, emissions, near-road, noise-barriers, traffic
Organization: U.S. Environmental Protection Agency
Potential Vorticity based parameterization for specification of Upper troposphere/lower stratosphere ozone in atmospheric models

Potential Vorticity based parameterization for specification of Upper troposphere/lower stratosphere ozone in atmospheric models - the data set consists of 3D O3 fields from the CMAQ modeling system across the northern hemisphere,  potential vorticity fields from the WRF model, and observated ozone from the WOUDC ozonesonde launches. 

This dataset is associated with the following publication:
Mathur, R., J. Pleim, C. Hogrefe, M. Gan, G. Sarwar, D. Wong, J. Wang, S. McKeen, J. Xing, and J. Wang. Representing the effects of stratosphere–troposphere exchange on 3-D O3 distributions in chemistry transport models using a potential vorticity-based parameterization.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 16: 10865-10877, (2016).

Tags: cmaq, ozone, potential-vorticity, stratosphere-troposphere-exchange
Organization: U.S. Environmental Protection Agency
A demonstration of the uncertainty in predicting the estrogenic activity of individual chemicals and mixtures from an in vitro estrogen receptor transcriptional activation assay (T47D-KBluc) to the in vivo uterotrophic assay using oral exposure

the data set contains the figures and tables from the publication in addition to the means, standard errors of the mean and the sample sizes used in each group for every experiment.  the data set also contains a description of the genes, their function and acronyms on the QPCR arrays used in the study.  Finally, the dataset includes the histopathology reports on the uterine changes induced by the different chemicals and the criteria used by the pathologist to classify the estrogenic effects of the chemicals. 

This dataset is associated with the following publication:
Conley, J., B. Hannas, V. Wilson, E. Gray, and J. Furr. A demonstration of the uncertainty in predicting the estrogenic activity of individual chemicals and mixtures from an in vitro estrogen receptor transcriptional activation assay (T47D-KBluc) to the in vivo uterotrophic assay using oral exposure.   TOXICOLOGICAL SCIENCES. Society of Toxicology,     382-395, (2016).

Tags: environmental-estrogens, estrogenic-activity-in-vitro-and-in-vivo, in-vitro-in-vivo-extrapolation, in-vitro-to-in-vivo-extrapolation, prediction-of-in-vivo-effects-from-in-vitro-gene-expression, uterine-estrogenic-response, uterine-histology, uterine-weight
Organization: U.S. Environmental Protection Agency
Waterline ATS B. globigii spore water disinfection data

Disinfection of B. globigii spores (a non-pathogenic surrogate for B. anthracis) in clean and dirty water using the ATS-Waterline system, which uses ultraviolet light and a charged membrane filter. 

This dataset is associated with the following publication:
Silva, G., J. Szabo, V. Namboodiri, R. Krishnan, J. Rodriguez, and A. Zeigler. Evaluation of and environmentally sustainable UV-assisted water treatment system for removal of Bacillus spores in water.   WATER SCIENCE AND TECHNOLOGY. IWA Publishing, London,  UK, 18(3): 968-975, (2018).

Tags: bacillus-anthracis, bacillus-atrophaeus, drinking-water-treatment, homeland-security, membrane-filter, ultraviolet
Organization: U.S. Environmental Protection Agency
Aquatic concentrations of chemical analytes compared to ecotoxicity estimates

We describe screening level estimates of potential aquatic toxicity posed by 227 chemical analytes that were measured in 25 ambient water samples collected as part of a joint USGS/USEPA drinking water plant study. Measured concentrations were compared to biological effect concentration (EC) estimates, including USEPA aquatic life criteria, effective plasma concentrations of pharmaceuticals, published toxicity data summarized in the USEPA ECOTOX database, and chemical structure-based predictions. Potential dietary exposures were estimated using a generic 3-tiered food web accumulation scenario. 

This dataset is associated with the following publication:
Kostich , M., R. Flick , A. Batt , H. Mash , S. Boone , E. Furlong, D. Kolpin, and S. Glassmeyer. Aquatic concentrations of chemical analytes compared to ecotoxicity estimates.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 579: 1649-1657, (2017).

Tags: chemical, ecotoxicity, hazard-ratio, water
Organization: U.S. Environmental Protection Agency
Quantitative Structure-Use Relationship (QSUR) Model Descriptors

This data set contains ToxPrint finger prints for all chemicals in FUse that had QSAR-ready SMILES strings as well as select physicochemical properties from the Estimation Program Interface Suite (EPI Suite) program. 

This dataset is associated with the following publication:
Phillips, K., J. Wambaugh, C. Grulke, K. Dionisio, and K. Isaacs. High-throughput screening of chemicals as functional substitutes using structure-based classification models.   GREEN CHEMISTRY. Royal Society of Chemistry, Cambridge,  UK, 19: 1063-1074, (2017).

Tags: alternatives-assement, consumer-products, expocast, functional-use, high-throughput-screening, machine-learning-algorithms, qsar
Organization: U.S. Environmental Protection Agency
Supporting Info

Supporting Info. 

This dataset is associated with the following publication:
Washington , J., and T. Jenkins. Abiotic Hydrolysis of Fluorotelomer-Based Polymers as a Source of Perfluorocarboxylates at the Global Scale.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 49(24): 14129-14135, (2015).

Tags: ftp-pfoa
Organization: U.S. Environmental Protection Agency
Future United States Domestic Water Demand

Population projections, estimated per capita consumption rate, and estimated total annual water demand to 2100 for four future projections based off the IPCC SRES climate scenarios.  The estimates for water use are based Bayesian regression analysis on 1985, 1990, 1995, 2005 and 2010 water use from USGS. 

This dataset is associated with the following publication:
Pickard, B., M. Nash, J. Baynes, and M. Mehaffey. Planning for community resilience to future United States domestic water demand.   LANDSCAPE AND URBAN PLANNING. Elsevier Science Ltd, New York, NY, USA, 158: 75-86, (2017).

Tags: baysian-regression, domestic-water, ecosystem-services, enviroatlas, future-scenarios, landscape-ecology, per-capita-use, population
Organization: U.S. Environmental Protection Agency
Supporting Info

Supporting Information. 

This dataset is associated with the following publication:
Washington , J., T. Jenkins, and E. Weber. Identification of Unsaturated and 2H Polyfluorocarboxylate Homologous Series and Their Detection in Environmental Samples and as Polymer Degradation Products.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 49(22): 13256-13263, (2015).

Tags: upfoa-hpfoa-upfca-hpfca
Organization: U.S. Environmental Protection Agency
Liver steatosis study_PFAA treated Wild type and PPAR KO mouse data

Data set 1 consists of the experimental data for the Wild Type and PPAR KO animal study and includes data used to prepare Figures 1-4 and Table 1 of the Das et al, 2016 paper. 

This dataset is associated with the following publication:
Das, K., C. Wood, M. Lin, A.A. Starkov, C. Lau, K.B. Wallace, C. Corton, and B. Abbott. Perfluoroalky acids-induced liver steatosis:  Effects on genes controlling lipid homeostasis.   TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 378: 32-52, (2017).

Tags: body-weight, cell-size, dna-content, hepatotoxicity, lipid, liver-body-weight-ratio, liver-weight, pcr, perfluorinated-chemicals, pfhxs, pfna, pfoa, steatosis, triglyceride
Organization: U.S. Environmental Protection Agency
Liver steatosis study_PFAA treated mouse gene array data

This file contains a link for Gene Expression Omnibus and the GSE designations for the publicly available gene expression data used in the study and reflected in Figures 6 and 7 for the Das et al., 2016 paper. 

This dataset is associated with the following publication:
Das, K., C. Wood, M. Lin, A.A. Starkov, C. Lau, K.B. Wallace, C. Corton, and B. Abbott. Perfluoroalky acids-induced liver steatosis:  Effects on genes controlling lipid homeostasis.   TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 378: 32-52, (2017).

Tags: hepatotoxicity, lipid-catabolism, lipid-synthesis, perfluorinated-chemicals, pfhxs, pfna, pfoa, steatosis
Organization: U.S. Environmental Protection Agency
Mutagenicity of Whole Biodiesel Extracts in Salmonella

Description is in the data set. 

This dataset is associated with the following publication:
Mutlu, E., S. Warren , P. Matthews, C. King , L. Walsh , A. Kligerman, J. Schmid , D. Janek, I. Kooter, B. Linak , I. Gilmour , and D. DeMarini. Health Effects of Soy-Biodiesel Emissions: Mutagenicity-Emission Factors.   INHALATION TOXICOLOGY. Informa Healthcare USA, New York, NY, USA, 27(11): 585-596, (2015).

Tags: biodiesel, combustion-emissions, complex-mixtures, mutagenicity, organic-extracts, pm
Organization: U.S. Environmental Protection Agency
Data to support "Boosted Regression Tree Models to Explain Watershed Nutrient Concentrations & Biological Condition"

Spreadsheets are included here to support the manuscript "Boosted Regression Tree Models to Explain Watershed Nutrient Concentrations and Biological Condition". 

This dataset is associated with the following publication:
Golden , H., C. Lane , A. Prues, and E. D'Amico. Boosted Regression Tree Models to Explain Watershed Nutrient Concentrations and Biological Condition.   JAWRA. American Water Resources Association, Middleburg, VA, USA, 52(5): 1251-1274, (2016).

Tags: boosted-regression-tree, index-of-biotic-integrity, nutrients, riparian-buffer, statistical-model, watershed, watershed-management
Organization: U.S. Environmental Protection Agency
USEEIO Satellite Files

These files contain the environmental data as particular emissions or resources associated with a BEA sectors that are used in the USEEIO model. They are organized by the emission or resources type, as described in the manuscript. The main files (without SI) show the final "satellite tables" in the 'Exchanges' sheet which have emissions or resource use per USD for 2013. The other sheets in these files provide meta data for the create of the tables, including general information, sources, etc. The 'export' sheet is used for saving the satellite table for csv export. The data dictionary describes the fields in this sheet. The supporting files provide all the details data transformation and organization for the development of the satellite tables. 

This dataset is associated with the following publication:
Yang, Y., W. Ingwersen, T. Hawkins, and D. Meyer. USEEIO: A new and transparent United States environmentally extended input-output model.   JOURNAL OF CLEANER PRODUCTION. Elsevier Science Ltd, New York, NY, USA, 158: 308-318, (2017).

Tags: criteria-air-pollutant-emissions, energy-use, greenhouse-gas-emissions, input-output-data, land-use, life-cycle-assessment, life-cycle-inventory-data, mineral-extraction, nutrient-releases, satellite-tables, sustainability, toxic-releases, water-use
Organization: U.S. Environmental Protection Agency
Ohmic resistance affects microbial community and electrochemical kinetics in a multi-anode microbial electrochemical cell

A-3txf_sequence summary.xksx: Abundance of contigs or unique sequences for each biofilm samples from anodes in the MEC reactor
Hodon Waterloo final_fasta_working.docx: Raw sequences with their identification numbers
RNA S1_MEC.docx: Representative sequences with their ID number and taxonomy. 

This dataset is associated with the following publication:
Santodomingo, J., H. Ryu, B. Dhar, and H. Lee. Ohmic resistance affects microbial community and electrochemical kinetics in a multi-anode microbial electrochemical cell.   JOURNAL OF POWER SOURCES. Elsevier Science Ltd, New York, NY, USA, 331: 315-321, (2016).

Tags: abundance, anode-potential, fasta-file, half-saturation-anode-potential, microbial-electrochemical-cells, multi-anode, ohmic-energy-loss, raw-sequences
Organization: U.S. Environmental Protection Agency
Neurophysiological assessment of auditory, peripheral nerve, somatosensory, and visual system function after developmental exposure to gasoline, E15, and E85 vapors.

Visual, auditory, somatosensory, and peripheral nerve evoked responses. 

This dataset is associated with the following publication:
Herr , D., D. Freeborn , L. Degn , S.A. Martin, J. Ortenzio, L. Pantlin, C. Hamm , and W. Boyes. Neurophysiological Assessment of Auditory, Peripheral Nerve, Somatosensory, and Visual System Function After Developmental Exposure to Gasoline, E15 and E85 Vapors.   NEUROTOXICOLOGY AND TERATOLOGY. Elsevier Science Ltd, New York, NY, USA, 54: 78-88, (2016).

Tags: biofuels, brainstem-auditory-evoked-responses, e0, e15, e85, neurophysiology, peripheral-nerve-evoked-potentials, somatosensory-evoked-potentials, vapors, visual-evoked-potentials
Organization: U.S. Environmental Protection Agency
Locomotor activity and tissues levels following acute administration of lambda- and gamma-cyhalothrin in rats

raw motor activity counts and tissue levels. 

This dataset is associated with the following publication:
Moser, G., Z. Liu, C. Schlosser, T. Spanogle, A. Chandrasekaran, and K. Mcdaniel. Locomotor activity and tissue levels following acute administration of lambda- and gamma-cyhalothrin in rats.   TOXICOLOGY AND APPLIED PHARMACOLOGY. Academic Press Incorporated, Orlando, FL, USA, 313: 97-103, (2016).

Tags: cyhalothrin, motor-activity, neurotoxicity, pyrethroids, toxicokinetics, toxicokineticscyhalothrin
Organization: U.S. Environmental Protection Agency
Tox_esterase_2016

individual values for liver detoxification for each human sample and for each chemical. 

This dataset is associated with the following publication:
Moser, G., and S. Padilla. Esterase detoxification of acetylcholinesterase inhibitors using human liver samples in vitro.   TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA,  11-20, (2016).

Tags: detoxification, esterases, pesticides
Organization: U.S. Environmental Protection Agency
Ozone-induced systemic and pulmonary effects are diminished in adrenalectomized rats

This data set is an excel file pertaining to the study that examined ozone-induced systemic and pulmonary effects in rats that underwent SHAM surgery (control), adrenal demedullation or total bilateral adrenalectomy. Different pages of the spreadsheet shows individual animal data for markers of lung injury and inflammation, body weights, whole body plethysmography measurements, levels of circulating hormones and lipids, and circulating white blood cell count as well as platelet count. 

This dataset is associated with the following publication:
Miller, D., S. Snow, M. Schladweiler , J. Richards , A. Ghio , A. Ledbetter , and U. Kodavanti. Acute Ozone-Induced Pulmonary and Systemic Metabolic Effects are Diminished in Adrenalectomized Rats#.   TOXICOLOGICAL SCIENCES. Society of Toxicology,    150(2): 312-22, (2016).

Tags: adrenalectomy, hpa-axis, lung-injury, ozone, stress-response
Organization: U.S. Environmental Protection Agency