AndreaBozzo/ceres-open-data-index huggingface dataset:
Box photosynthesis modeling results for WRF/CMAQ LSM

Box Photosynthesis model simulations for latent heat and ozone at 6 different FLUXNET sites. 

This dataset is associated with the following publication:
Ran, L., J. Pleim, C. Song, L. Band, J. Walker, and F. Binkowski. A photosynthesis-based two-leaf canopy stomatal conductance model for meteorology and air quality modeling with WRF/CMAQ PX LSM.   JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES. American Geophysical Union, Washington, DC, USA, 122(3): 1930-1952, (2017).

Tags: air-quality-modeling, ozone-deposition, photosynthesis, px-lsm, wrf-cmaq
Organization: U.S. Environmental Protection Agency
GMAP Phoenix 2013 data

mobile monitoring data from the 2013 Phoenix study. 

This dataset is associated with the following publication:
Venkatram, A., V. Isakov , P. Deshmukh, and R. Baldauf. Modeling the impact of solid noise barriers on near road air quality.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 141: 462-469, (2016).

Tags: air-quality, dispersion-modeling, near-road, noise-barriers, traffic
Organization: U.S. Environmental Protection Agency
Measured exposure metrics

measured air pollution exposure metrics. 

This dataset is associated with the following publication:
Breen , M., T. Long , B. Schultz, R. Williams , J. Richmond-Bryant , M. Breen, J. Langstaff , R. Devlin , A. Schneider, J. Burke , S.A. Batterman, and Q.Y. Meng. Air Pollution Exposure Model for Individuals (EMI) in Health Studies: Evaluation for Ambient PM2.5 in Central North Carolina.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 49(24): 14184-14194, (2015).

Tags: air-pollution, exposure, human-health
Organization: U.S. Environmental Protection Agency
Development of the crop residue and rangeland burning in the 2014 National Emissions Inventory using information from multiple sources

This workbook contains all the activity data, emission factor data, and ancillary data used to compute crop residue  burning and rangeland emissions for the 2014 NEI as described in the journal article (see citation) in addition to the data associated with Figures 1-5. 

This dataset is associated with the following publication:
Pouliot, G., V. Rao, J. McCarty, and A. Soja. Development of the crop residue and rangeland burning in the 2014 National Emissions Inventory using information from multiple sources.   JOURNAL OF THE AIR & WASTE MANAGEMENT ASSOCIATION. Air & Waste Management Association, Pittsburgh, PA, USA, 67(5): 613-622, (2017).

Tags: 2014-nei, crop-residue-burning, cropland-data-layer, hazard-mapping-system, national-emission-inventory, rangeland-burning
Organization: U.S. Environmental Protection Agency
Assessing model characterization of single source secondary pollutant impacts using 2013 SENEX field study measurements

The dataset consists of 4 comma-separated value (csv) text files and 3 netCDF data files. Each csv file contains the observed and CMAQ modeled gas and aerosol concentrations collected during the SENEX field campaign. The netCDF files contain ground layer modeled single source contributions. The headers of each file contain the variable names for each column. An additional data dictionary with variable descriptions and units for the csv files is included with the data along with a file detailing the mapping of files to figures in the manuscript. 

This dataset is associated with the following publication:
Baker, K., and M. Woody. Assessing Model Characterization of Single Source Secondary Pollutant Impacts Using 2013 SENEX Field Study Measurements.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 51(7): 3833-3842, (2017).

Tags: cmaq, cmaq-isam
Organization: U.S. Environmental Protection Agency
Multipollutant health effect simulations

Resulting betas (health effects) from a variety of copollutant epidemiologic models used to analyze the impact of exposure measurement error on health effect estimates. 

This dataset is associated with the following publication:
Dionisio , K., H.H. Chang, and L. Baxter. A simulation study to quantify the impacts of exposure measurement error on air pollution health risk estimates in copollutant time-series models..   ENVIRONMENTAL HEALTH. Academic Press Incorporated, Orlando, FL, USA, 15: 114, (2016).

Tags: bias, copollutant, exposure-assessment, exposure-measurement-error, exposure-modeling
Organization: U.S. Environmental Protection Agency
QSARs for Plasma Protein Binding: Source Data and Predictions

The dataset has all of the information used to create and evaluate 3 independent QSAR models for the fraction of a chemical unbound by plasma protein (Fub) for environmentally relevant chemicals. In vitro plasma protein values for 1245 pharmaceuticals and 406 ToxCast chemicals were collected from the literature (Obach 2008, Zhu 2013, Wetmore 2012, Wetmore 2015). The 21 descriptors calculated by MOE that were used in the models are included, as is an acid/base/neutral/zwitterions classification based on ionization percentages calculated in ADMET Predictor. Finally, the dataset includes the in silico Fub predictions for each chemical from the constructed k-nearest neighbor, support vector machine, and random forest QSAR models, as well as a consensus (average) prediction. 

This dataset is associated with the following publication:
Ingle, B., R. Tornero-Velez, J. Nichols, and B. Veber. Informing the Human Plasma Protein Binding of Environmental Chemicals by Machine Learning in the Pharmaceutical Space: Applicability Domain and Limits of Predictability.   Journal of Chemical Information and Modeling. American Chemical Society, Washington, DC, USA, 56(11): 2243-2252, (2016).

Tags: domain-of-applicability, environmental-toxicology, machine-learning, plasma-protein-binding, quantitative-structure-activity-relationship-qsar
Organization: U.S. Environmental Protection Agency
CMAPS source apportionment

This dataset includes concentrations of trace inorganic elements, ions, and organic/element carbon of PM collected from two sampling sites (GT Craig and Chippewa Lake) in Cleveland as well as PM source profiles/contributions to each sampling sites. 

This dataset is associated with the following publication:
Kim, Y., T. Krantz, J. Mcgee, K. Kovalcik, R. Duvall, R. Willis, A. Kamal, M. Landis, G. Norris, and I. Gilmour. Chemical Composition and Source Apportionment of Size Fractionated Particulate Matter in Cleveland, Ohio, USA.   ENVIRONMENTAL POLLUTION. Elsevier Science Ltd, New York, NY, USA, 218: 1180-1190, (2016).

Tags: air-pollution, cleveland, rural, source-apportionment, urban
Organization: U.S. Environmental Protection Agency
Temporary Vs. Permanent Sub-Slab Ports: A Comparative Performance Study

Data Tables from Published Article. 

This dataset is associated with the following publication:
Zimmerman, J., C. Lutes, B. Cosky, B. Schumacher, D. Salkie, and R. Truesdale. Temporary vs. Permanent Sub-slab Ports: A Comparative Performance Study.   SOIL AND SEDIMENT CONTAMINATION: AN INTERNATIONAL JOURNAL. CRC Press LLC, Boca Raton, FL, USA, 26(3): 294-307, (2017).

Tags: pce, sub-slab-port, tce, vapor-intrusion, volatile-organic-compounds
Organization: U.S. Environmental Protection Agency
Tables and figures from Gavett 2016 paper in Particle and Fibre Toxicology

The files in the dataset are labeled according to table or figure number as listed in the paper (Gavett et al., Particle and Fibre Toxicology, 13:17, 2016). The paper itself and an online additional file are also included. Data files from the additional file are labeled as Extra File with figures and tables labeled Table S1, Figure S1, etc. The files are all self explanatory with clearly labeled headers and notes explaining the data. Derived data can be traced back to original data by following the formula links in excel files. PDF report titles contain page numbers which reference summary tables used in the paper. 

This dataset is associated with the following publication:
Gavett , S., C. Parkinson, G. Willson, C. Wood , A. Jarabek , K. Roberts, U. Kodavanti , and D. Dodd. Persistent Effects of Libby Amphibole and Amosite Asbestos Following Subchronic Inhalation in Rats.   Particle and Fibre Toxicology. BioMed Central Ltd, London,  UK, 13(1): 17, (2016).

Tags: amosite, asbestos, inflammasome, inflammation, inhalation-exposures, libby-amphibole
Organization: U.S. Environmental Protection Agency
Data for Cyphert, J Toxicol Environ Health A, 2016: Long-Term Toxicity of Naturally Occurring Asbestos in Male Fischer 344 Rats

The data shown are raw values used in tables and figures published in Cyphert et al., J Toxicol Environ Health A, 2016. Besides the published paper which is included in the dataset, each file is clearly labeled with the table or figure number and 1 to 3 words indicating the subject of the table or figure. All table and figure files are excel spreadsheets which are clearly labeled with the data in columns. One word file has pathology notes used in the composition of figures 4 and 5. 

This dataset is associated with the following publication:
Cyphert, J., M. McGee, A. Nyska, M. Schladweiler , U. Kodavanti , and S. Gavett. Long-Term Toxicity of Naturally Occurring Asbestos in Male Fischer 344 Rats.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH - PART A:  CURRENT ISSUES. Taylor & Francis, Inc., Philadelphia, PA, USA, 79(2): 49-60, (2016).

Tags: carcinogenesis, chrysotile, ferroactinolite, fibrosis, libby-amphibole, tremolite
Organization: U.S. Environmental Protection Agency
Multiscale predictions of aviation-attributable PM 2.5 for US airports modeled using CMAQ with plume-in-grid and an aircraft-specific 1-D emission model

NA. This dataset is not publicly accessible because: No EPA generated data was used in this work. It can be accessed through the following means: NA. Format: No EPA generated data was used in this work. 

This dataset is associated with the following publication:
Woody, M., H. Hsi-Wu Wong, J.J. West, and S. Arunachalam. Multiscale predictions of aviation-attributable PM2.5 for U.S. airports modeled using CMAQ with plume-in-grid and an aircraft-specific 1-D emission model.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 147: 384-394, (2016).

Tags: aircraft-emissions, cmaq, plume-in-grid
Organization: U.S. Environmental Protection Agency
Estimation of pyrethroid pesticide intake using regression modeling of food groups based on composite dietary samples

Population-based estimates of pesticide intake are needed to characterize exposure for particular demographic groups based on their dietary behaviors. Regression modeling performed on measurements of selected pesticides in composited duplicate diet samples allowed 1) estimation of pesticide intakes for a defined demographic community, and 2) comparison of dietary pesticide intakes between the composite and individual samples. Extant databases were useful for assigning individual samples to composites, but they could not provide the breadth of information needed to facilitate measurable levels in every composite. Composite sample measurements were found to be good predictors of pyrethroid pesticide levels in their individual sample constituents where sufficient measurements are available above the method detection limit. Statistical inference shows little evidence of differences between individual and composite measurements and suggests that regression modeling of food groups based on composite dietary samples may provide an effective tool for estimating dietary pesticide intake for a defined population. 

This dataset is associated with the following publication:
Michael, L., G.G. Brown, and L. Melnyk. Estimation of pyrethroid pesticide intake using regression modeling of food groups based on composite dietary samples...   Journal of Environmental Science and Health. Part B, Pesticides, Food Contaminants, and Agricultural Wastes. Marcel Dekker Incorporated, New York, NY, USA, 51(11): 751, (2016).

Tags: community-duplicat-diet, dietary-exposure, dietary-pesticide-intake, food-analysis, pesticides, pyrethroids, regression-modeling, sample-compositing
Organization: U.S. Environmental Protection Agency
Laboratory simulations of the atmospheric mixed layer in flow over complex terrain

A laboratory study of the influence of complex terrain on the interface between a well-mixed boundary layer and an elevated stratified layer was conducted in the towing-tank facility of the U.S. Environmental Protection Agency.  The height of the mixed layer in the daytime boundary layer can have a strong influence on the concentration of pollutants within this layer.  Deflections of streamlines at the height of the interface are primarily a function of hill Froude number (Fr), the ratio of mixed-layer height (zi) to terrain height (h), and the crosswind dimension of the terrain.  The magnitude of the deflections increases as Fr increases and zi / h decreases.  For mixing-height streamlines that are initially below the terrain top, the response is linear with Fr; for those initially above the terrain feature the response to Fr is more complex.  Once Fr exceeds about 2, the terrain-related response of the mixed layer interface decreases somewhat with increasing Fr (toward more neutral flow).  Deflections are also shown to increase as the crosswind dimensions of the terrain increases.  Comparisons with numerical modeling, limited field data and other laboratory measurements reported in the literature are favorable. Additionally, visual observations of dye streamers suggests that the flow structure exhibited for our elevated inversions passing over three dimensional hills is similar to that reported in the literature for continuously stratified flow over two-dimensional hills. 

This dataset is associated with the following publication:
Perry, S., and W. Snyder. Laboratory simulations of the atmospheric mixed-layer in flow over complex topography.   PHYSICS OF FLUIDS. Physics of Fluids,    29(2): 020702, (2017).

Tags: atmospheric-mixed-layer, complex-terrain, stratified-water-channel
Organization: U.S. Environmental Protection Agency
Data for GMD article "A framework for expanding aqueous chemistry in the Community Multiscale Air Quality (CMAQ) model version 5.1"

These data were used to generate the figures included in the following manuscript: Fahey, et al. (2017) "A framework for expanding aqueous chemistry in the Community Multiscale Air Quality (CMAQ) model version 5.1". Geosci. Mod. Dev. 

This dataset is associated with the following publication:
Fahey, K., A. Carlton, H. Pye, J. Baek, B. Hutzell, C. Stanier, K. Baker, W. Appel, M. Jaoui, and J. Offenberg. A framework for expanding aqueous chemistry in the Community Multiscale Air Quality (CMAQ) model version 5.1.   Geoscientific Model Development. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 10: 1587-1605, (2017).

Tags: aqueous-chemistry, clouds, cmaq, kpp, soa, sulfate
Organization: U.S. Environmental Protection Agency
PM mass and elemental species concentration data for I-96 monitoring sites

PM2.5 (fine) and PM10-2.5 (coarse) mass concentrations for monitoring sites located 10 m, 100 m and 300 m north of Interstate I-96 in Detroit, the water-soluble and acid-soluble elemental species concentrations for each, and results of factor analysis using these data. 

This dataset is associated with the following publication:
Oakes, M., J. Burke, G. Norris, K. Kovalcik, J.P. Pancras, and M. Landis. Near-road enhancement and solubility of fine and coarse particulate matter trace elements near a major interstate in Detroit, Michigan.   ATMOSPHERIC ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 145: 213-224, (2016).

Tags: air-pollution, brake-wear, near-road, particulate-matter, trace-metals, traffic-sources
Organization: U.S. Environmental Protection Agency
E331 TP HF RW O3 SHC2.63 SCID: A-bvqk

Data for differing physiological measures of dams on high fat or control diet with/without exercise and physiological effects on male and female offspring. 

This dataset is associated with the following publication:
Gordon, C., P. Phillips, A. Johnstone, J. Schmid, M. Schladweiler, A. Ledbetter, S. Snow, and U. Kodavanti. EFFECTS OF MATERNAL HIGH FAT DIET AND SEDENTARY LIFESTYLE ON SUSCEPTIBILITY OF ADULT OFFSPRING TO OZONE EXPOSURE IN RATS.   INHALATION TOXICOLOGY. Informa Healthcare USA, New York, NY, USA,  239-254, (2017).

Tags: exercise, maternal-diet, offspring, ozone, pulmonary, rat, sedentary
Organization: U.S. Environmental Protection Agency
E331 Behavior TP HF RW O3 SHC2.63

Human and animal studies indicate that maternal obesity can negatively impact aspects of metabolism and neurodevelopment in the offspring.  Not known, however, is whether maternal exercise can alter these adverse outcomes.  In this study, Long-Evans female rats were provided a high fat (60%; HFD) or control diet (CD) 44 days before mating and throughout gestation and lactation.  Running wheels were available to half of each diet group during the gestational period only: CD diet with (CDRW) or without (sedentary; CDSED) exercise, and HFD with (HFRW) or without (HFSED) exercise.  The offspring in this study were put on control diet after weaning and examined using a number of behavioral evaluations up to 4 months of age.  Offspring of CDRW dams weighed less than offspring from CDSED dams, as well as from HFD dams.  After weaning, the lower weight in CDRW offspring persisted in male, but not female, rats.  Male (females not tested) offspring from HFSED dams performed worse than other groups in a Morris water maze during initial spatial training as well as reversal learning; memory was not impacted.  Female, but not male, offspring from the HFSED dams showed less preference for chocolate milk during a 2-bottle choice test.  No differences were seen in tests of novel object recognition, social approach, or locomotor activity.  Thus, maternal diet and exercise produced differential effects on growth and selective behaviors in the offspring, and the data demonstrate a positive impact of maternal exercise on the offspring in that it ameliorated some deleterious behavioral effects of a maternal high fat diet. 

This dataset is associated with the following publication:
Moser, V., K. Mcdaniel, E. Wooland, P. Phillips, J. Franklin, and C. Gordon. IMPACTS OF MATERNAL DIET AND EXERCISE ON OFFSPRING BEHAVIOR AND GROWTH.   NEUROTOXICOLOGY AND TERATOLOGY. Elsevier Science Ltd, New York, NY, USA,  46-50, (2017).

Tags: behavior, exercise, maternal-diet, offspring, rat
Organization: U.S. Environmental Protection Agency
Comparison of cryopreserved trout hepatocytes and liver S9 fractions as in vitro tools for bioaccumulation assessment of chemicals that undergo biotransformation in fish

The purpose of this study was to compare two in vitro systems, cryopreserved trout hepatocytes and trout liver S9 fractions, used to predict in vivo levels of biotransformation in fish.  This information is needed to refine modeled estimates of bioaccumulation for hydrophobic organic chemicals that undergo biotransformation.  In this effort we used trout hepatocytes to measure in vitro biotransformation of 6 polycyclic aromatic hydrocarbons (PAHs).  The results were compared to metabolism rates reported previously for trout liver S9 fractions.  Results obtained using both in vitro systems were then used to predict measured levels of hepatic clearance for the same test chemicals exhibited by isolated perfused livers.  The results of this study suggest that both in vitro systems are well suited for performing in vitro-in vivo metabolism extrapolations with fish as a means for improving modeled bioaccumulation predictions. 

This dataset is associated with the following publication:
Fay, K., P. Fitzsimmons, A. Hoffman, and J. Nichols. Comparison of trout hepatocytes and liver S9 fractions  as in vitro models for predicting hepatic clearance in fish.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry,  FL, USA, 36(2): 463-471, (2017).

Tags: bioaccumulation, biotransformation, fish, in-vitro-in-vivo-extrapolation, rainbow-trout, rainbow-trout-fish
Organization: U.S. Environmental Protection Agency
2016 Uinta Basin Pneumatic Controller Study Database

2016 Uinta Basin Pneumatic Controller Study Database: This study along with select figures and calculations. 

This dataset is associated with the following publication:
Thoma, E., P. Deshmukh, R. Logan, M. Stovern, C. Dresser, and H. Brantley. Assessment of Uinta Basin Oil and Natural Gas Well Pad Pneumatic Controller Emissions.   Journal of Environmental Protection. Scientific Research Publishing, Inc., Irvine, CA, USA, 8(4): 394-415, (2017).

Tags: methane, oil-and-natural-gas-production, pneumatic-controller, uinta-basin, volatile-organic-compounds
Organization: U.S. Environmental Protection Agency
Turkey Run Landfill Emissions Dataset

landfill emissions measurements for the Turkey run landfill in Georgia. 

This dataset is associated with the following publication:
De la Cruz, F., R. Green, G. Hater, J. Chanton, E. Thoma , T. Harvey, and M. Barlaz. Comparison of Field Measurements at a New Landfill to Methane Emissions Models.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 50(17): 9483-9441, (2016).

Tags: landfill, methane, mobile-measurements, otm-33b
Organization: U.S. Environmental Protection Agency
Quantitative Structure-Use Relationship Model thresholds for Model Validation, Domain of Applicability, and Candidate Alternative Selection

This file contains value of the model training set confusion matrix, domain of applicability evaluation based on training set to predicted chemicals structural similarity, and 75th percentile bioactivity index values for each QSUR model. 

This dataset is associated with the following publication:
Phillips, K., J. Wambaugh, C. Grulke, K. Dionisio, and K. Isaacs. High-throughput screening of chemicals as functional substitutes using structure-based classification models.   GREEN CHEMISTRY. Royal Society of Chemistry, Cambridge,  UK, 19: 1063-1074, (2017).

Tags: alternatives-assement, consumer-products, expocast, functional-use, high-throughput-screening, machine-learning-algorithms, qsar
Organization: U.S. Environmental Protection Agency
Influence of exposure differences on city-to-city heterogeneity in PM2.5-mortality associations in U.S. Cities

This dataset contains information on the cluster characteristics, health effect estimates, and the meta-regression results. 

This dataset is associated with the following publication:
Baxter, L., J. Crooks, and J. Sacks. Influence of exposure differences on city-to-city heterogeneity in PM2.5-mortality associations in US cities.   ENVIRONMENTAL HEALTH. Academic Press Incorporated, Orlando, FL, USA, 16(1): 1-8, (2017).

Tags: air-pollution-exposure, epidemiology, fine-particulate-matter
Organization: U.S. Environmental Protection Agency
Quantitative Structure-Use Relationship Model Predictions to evaluate Tox21 Chemicals as Functional Substitutes and Candidate Alternatives

This dataset provides a prediction for all Tox21 chemicals with available QSUR descriptors across all 41 valid QSUR models developed with FUse. 

This dataset is associated with the following publication:
Phillips, K., J. Wambaugh, C. Grulke, K. Dionisio, and K. Isaacs. High-throughput screening of chemicals as functional substitutes using structure-based classification models.   GREEN CHEMISTRY. Royal Society of Chemistry, Cambridge,  UK, 19: 1063-1074, (2017).

Tags: alternatives-assement, consumer-products, expocast, functional-use, high-throughput-screening, machine-learning-algorithms, qsar
Organization: U.S. Environmental Protection Agency