AndreaBozzo/ceres-open-data-index huggingface dataset:
BioSpyder data for perchlorate and propylthiouracil studies

Further details on 5 files are found in overview tab of each one. All data sets contain transcriptomic data from Biospyder run in March 2025.
1. "Biospyder M0516..." Tissue is forebrain of GD20 fetal rat pups born to dams exposed to 0  1 30 300 or 1000ppm ammonium perchlorate (ClO4) in drinking water from GD6-GD20 in study M0516 in 2016
2. "Biospyder M0714..." Tissue is forebrain of GD20 fetal rat pups born to dams exposed top 0  1 2  or 3ppm propylthiouracil (PTU) in drinking water from GD6-GD20 in study M0714 in 2014
3. "Biospyder M0918 ClO4 PN0..." Tissue is forebrain of PN0 pups born to dams exposed to 0 or 300ppm ammonium perchlorate (ClO4) in drinking water from GD6-PN21 under conditions of a replete iodine sufficient vs an iodine deficient diet in study M0918 in 2018-2019.
4. "BioSpyder M0918 ClO4 PN2..." Tissue is forebrain of PN2 pups born to dams exposed to 0 or  300ppm ammonium perchlorate (ClO4) in drinking water from GD6-PN21 under conditions of a replete iodine sufficient vs an iodine deficient diet in study M0918 in 2018-2019.
5. "BioSpyder M1123..." Tissue is forebrain of PN0 rat pups born to dams exposed top 0  0.5 1 or 3ppm propylthiouracil (PTU) in drinking water from GD6-PN21.




Tags: adverse-outcome-pathways-aops, childrens-health, developmental-neurotoxicity, in-vivo, perchlorate, propylthiouracil
Organization: U.S. Environmental Protection Agency
Wadeable Stream Habitat Assessments in the Southeastern United States, 2017-2024 Cumulative Data Package

This package contains data collected by the Southeast Coast Network (SECN), a part of the Inventory and Monitoring Division (IMD) of the National Park Service (NPS). Data was collected under the  Wadeable Stream Habitat Monitoring Protocol (McDonald et al. 2018) during the year 2023. Wadeable stream habitat monitoring surveys were conducted on two stream reaches at Kennesaw Mountain National Battlefield Park (KEMO), one stream reach at Horseshoe Bend National Military Park (HOBE), and one stream reach at Ocmulgee Mounds National Historical Park (OCMU). The data contained within describe geomorphic and habitat conditions observed within the monitored stream reaches at the time of the surveys. The geomorphic dimensions (cross-sectional morphology, channel widths, bank heights, bank angles, bank vegetative cover, and reach slope and sinuosity) of the selected stream reaches are measured to understand the natural range of variability of similar sized streams within and between the park units. Understanding the variability in channel morphology between study reaches will determine which reaches are being negatively impacted by upstream land use and land cover and provide an understanding of long-term trajectories of change along each stream reach. The habitat data provide an understanding of the habitats that are available for colonization by benthic invertebrates within each stream reach. Habitat measures selected for this protocol focus on inventorying large woody debris and bed sediment within each reach. These components of habitat have been shown to be highly influential in the distribution and character of biota within a stream. These data will also facilitate future complementary studies that can focus on the other physical factors (e.g., current, temperature, and oxygen) that influence biotic assemblages.

Tags: geomorpology, habitat, horseshoe-bend-national-military-park, kennesaw-mountain-national-battlefield-park, monitoring, ocmulgee-mounds-national-historical-park, southeast-coast-network, stream, survey, water
Organization: Department of the Interior
Digital Elevation Models (DEMs) for the main 8 Hawaiian Islands

Digital elevation model (DEM) data are arrays of regularly spaced elevation values referenced horizontally either to a Universal Transverse Mercator (UTM) projection or to a geographic coordinate system. The grid cells are spaced at regular intervals along south to north profiles that are ordered from west to east. The U.S. Geological Survey (USGS) produces five primary types of elevation data: 7.5-minute DEM, 30-minute DEM, 1-degree DEM.These datasets were derived from USGS 7.5' DEM Quads for the main 8 Hawaiian Islands.   Individual DEM quads were converted to a common datum, and vertical unit, and subsequently mosaicked in ArcGIS 9.x.  The DEM for Hawaii (Big Island) has a coordinate system of NAD83 UTM5N.  The DEM for the remaining 7 islands (Maui, Kahoolawe, Lanai, Molokai, Oahu, Kauai and Niihau) have a coordinate system of NAD83 UTM4N. All rasters have a spatial resolution of 10 meters and are in the ESRI grid format.  On this metadata sheet, the bounding coordinates and row and column counts  are for a hypothetical 10m grid that would contain the 8 main Hawaiian Islands.  For bounding coordinates and the number of rows and columns for each actual, individual DEM, users should consult their respective layer properties.

Tags: 2007, 2007 hawaiian benthic habitat maps, bathymetry/topography, big island, central pacific ocean, country/territory, doc/noaa/nos/nccos, hawaii, hawaii island, hawaii island (19n155w0003), hawaii_2007, hawaiian islands, honolulu, kahoolawe, kahoolawe island, kahoolawe island (20n156w0001), kalawao, kauai, kauai island, kauai island (22n159w0001), lanai, lanai island, lanai island (20n156w0002), maui, maui island, maui island (20n156w0004), molokai, molokai island, molokai island (21n157w0001), national centers for coastal ocean science, national ocean service, niihau, niihau island, niihau island (21n160w0001), noaa, oahu, oahu (21n157w0003), oahu island, ocean basin, pacific ocean, u.s. department of commerce, united states of america
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Walton-Smith CTD, WS21212, WS21212_WS21212_Sta064, 2021-08-06, 25.165N 81.1615W

Walton-Smith Conductivity, Temperature, Depth (CTD) - WS21212 - WS21212_WS21212_Sta064 - 2021-08-06 - 25.165N 81.1615W. Hydrographic Measurements in the Gulf of Mexico. flags: 1 = good; 3 =  mean ÃÂ± 3*standard deviation; 4 = mean ÃÂ± 5*standard deviation; 9 = missing

Tags: 2021-08-06, 25.165n, 81.1615w, 911plus, acoustic, acoustic velocity, acoustics, active, altimeter, altimeter status_flag, atlantic, attenuation, attenuation/transmission, available, beam, beam_attenuation status_flag, beam_transmission status_flag, c-star, chemistry, chlorophyll, chlorophyll_a_fluorescense_in_sea_water, chlorophyll_a_fluorescense_in_sea_water status_flag, coefficient, color, conductivity, coordinate, crs, ctd, currents, data, density, depth, descent, descent_rate status_flag, dissolved, dissolved o2, dissolved_oxygen status_flag, division, downwelling, earth, earth science, ecosystems, elapsed, electrical, flag, fluorescence, fluorescense, fluorometer, flux, fraction, fractional, fractional_saturation_of_oxygen_in_sea_water, fractional_saturation_of_oxygen_in_sea_water status_flag, gom, good, grid, gulf, horizontal, identifier, instrument, instrument1, instrument10, instrument11, instrument2, instrument3, instrument4, instrument5, instrument6, instrument7, instrument8, instrument9, irradiance, laboratory, laboratory/ocean, labs, latitude, longitude, mapping, marine biodiversity observation network, meteorological, mexico, noaa, o2, ocean, ocean acoustics, ocean chemistry, ocean color, ocean optics, ocean pressure, ocean temperature, oceanographic, oceans, optical, optical properties, optics, oxygen, par, par/irradiance, percent, photon, photosynthetic, photosynthetically, photosynthetically active radiation, photosynthetically_available_radiation, photosynthetically_available_radiation status_flag, platform, practical, pressure, profile, properties, quality, quality_flag, radiance, radiation, radiative, rate, reference, salinity, salinity/density, saturarion, saturation, sbe, science, sea, sea_water_electrical_conductivity, sea_water_electrical_conductivity status_flag, sea_water_practical_salinity, sea_water_pressure, sea_water_pressure status_flag, sea_water_salinity status_flag, sea_water_sigma_t, sea_water_sigma_t status_flag, sea_water_temperature, sea_water_temperature status_flag, seabird, seapoint, seawater, second, sensor, sigma, smith, sonde, sound, spar, spatial, speed, speed_of_sound_in_sea_water, speed_of_sound_in_sea_water status_flag, spherical, sta064, sta064.cnv, star, status, surface, surface_downwelling_photosynthetic_photon_spherical_irradiance_in_sea_water, surface_photosynthetically_available_radiation status_flag, system, temperature, time, transmission, transmissometer, variable, velocity, volume, volume_beam_attenuation_coefficient_of_radiative_flux_in_sea_water, volume_fraction_of_oxygen_in_sea_water, walton, walton-smith, water, water pressure, water temperature, wet, ws21212
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
KAKWA RIVER AT HIGHWAY NO. 40

Timeseries data from 'KAKWA RIVER AT HIGHWAY NO. 40' (ca_hydro_07GB003)

Tags: aggregate_quality_flag, altitude, atmosphere, biology, biosphere, canada water office, earth science, environment, latitude, longitude, ocean, quality_flag, river_discharge, time, water_surface_height_above_reference_datum
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Wrangell, AK

Timeseries data from 'Wrangell, AK' (noaa_nos_co_ops_9451204)

Tags: aggregate_quality_flag, altitude, atmosphere, biology, biosphere, earth science, environment, latitude, longitude, noaa center for operational oceanographic products and services (co-ops), ocean, quality_flag, sea_surface_height_above_sea_level, sea_surface_height_amplitude_due_to_geocentric_ocean_tide, time
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
PILARCITOS C BL STONE DAM NR HILLSBOROUGH CA (USGS 11162620)

Timeseries data from 'PILARCITOS C BL STONE DAM NR HILLSBOROUGH CA (USGS 11162620)' (gov_usgs_nwis_11162620)

Tags: aggregate_quality_flag, altitude, atmosphere, biology, biosphere, earth science, environment, latitude, longitude, ocean, quality_flag, river_discharge, sea_water_temperature, time, usgs national water information system (nwis), water_surface_height_above_reference_datum
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
FAST Eddy Sys 2  Transect 266, 75kHz kHz VMADCP

Program of vessel mount ADCP measurements comprising a combination of 75kHz and 150kHz ADCP data collected in the vicinity of the Loop Current and drilling blocks between 2009 and 2020.

Tags: acoustic, adcp, bins, bsee, circulation, coastal, crs, current, currents, data, depth, dir, direction, distance, doppler, drilling, earth science, east, eastward, eastward_sea_water_velocity, gcoos, gulf, identifier, instrument, kika, latitude, longitude, mexico, north, northward, northward_sea_water_velocity, o&g lc vmadcp program, observing, ocean, ocean circulation, ocean currents, ocean temperature, oceans, platform, platform/ocean, profile, profiler, sample, sea, seawater, series, speed, stations, stations/drilling, surface, system, temperature, time, time series, towards, upward, velocity, vert, water, water temperature
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Raven Bay, AK

Timeseries data from 'Raven Bay, AK' (noaa_nos_co_ops_9462573)

Tags: aggregate_quality_flag, altitude, atmosphere, biology, biosphere, earth science, environment, latitude, longitude, noaa center for operational oceanographic products and services (co-ops), ocean, quality_flag, sea_surface_height_amplitude_due_to_geocentric_ocean_tide, time
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Kings Bay Msf Pier, GA Predictions (KBMG1)

Timeseries data from 'Kings Bay Msf Pier, GA Predictions (KBMG1)' (noaa_nos_co_ops_8679598_predicti)

Tags: aggregate_quality_flag, altitude, atmosphere, biology, biosphere, earth science, environment, latitude, longitude, noaa center for operational oceanographic products and services (co-ops), ocean, quality_flag, sea_surface_height_amplitude_due_to_geocentric_ocean_tide, time
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Data for ioos-station-wmo-42865-20180521_0123-20180521_0123

Current profile data from Downward-looking Teledyne RDI 38 kHz Ocean Observer ADCP, ADCP #0 on BlackHornet, 27.31N, 93.56W, 2018/05/21 through 2018/06/13

Tags: acoustic, adcp, bins, bsee, bsee notice to lessees 2018-g01, circulation, coastal, crs, current, currents, data, depth, dir, direction, direction_of_sea_water_velocity, distance, doppler, drilling, earth science, east, eastward, eastward_sea_water_velocity, gcoos, gulf, identifier, instrument, kika, latitude, longitude, mexico, north, northward, northward_sea_water_velocity, observing, ocean, ocean circulation, ocean currents, ocean temperature, oceans, platform, platform/ocean, profile, profiler, sample, sea, sea_water_speed, seawater, series, speed, stations, stations/drilling, surface, system, temperature, time, time series, towards, upward, upward_sea_water_velocity, velocity, vert, water, water temperature
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
SAWMILL C BL U TAILRACE NR SITKA AK (USGS 15087810)

Timeseries data from 'SAWMILL C BL U TAILRACE NR SITKA AK (USGS 15087810)' (gov_usgs_nwis_15087810)

Tags: aggregate_quality_flag, altitude, atmosphere, biology, biosphere, earth science, environment, latitude, longitude, ocean, quality_flag, river_discharge, sea_water_temperature, time, usgs national water information system (nwis), water_surface_height_above_reference_datum
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Fugro Cruise C16267 Line 0043, 300 kHz VMADCP

Program of vessel mount Acoustic Doppler Current Profiler (ADCP) measurements comprising a combination of 300kHz and 75kHz ADCP data collected in the vicinity of the Loop Current and drilling blocks between 2004 and 2007.

Tags: acoustic, adcp, bin, c16215, circulation, current, currents, data, dephs, depth, direction, doppler, earth, earth science, fugro, gas, identifier, inc, latitude, longitude, loop, mount, o&g lc vmadcp program, ocean, ocean circulation, ocean currents, oceans, oil, platform, profiler, program, science, sea, sea_water_speed, sea_water_to_direction, seawater, speed, time, trajectory, various, velocity, vessel, water
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Fugro Cruise C16215 Line 1517, 75 kHz VMADCP

Program of vessel mount Acoustic Doppler Current Profiler (ADCP) measurements comprising a combination of 300kHz and 75kHz ADCP data collected in the vicinity of the Loop Current and drilling blocks between 2004 and 2007.

Tags: acoustic, adcp, bin, c16215, circulation, current, currents, data, dephs, depth, direction, doppler, earth, earth science, fugro, gas, identifier, inc, latitude, longitude, loop, mount, o&g lc vmadcp program, ocean, ocean circulation, ocean currents, oceans, oil, platform, profiler, program, science, sea, sea_water_speed, sea_water_to_direction, seawater, speed, time, trajectory, various, velocity, vessel, water
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
"LATEX CTD - d94j069.nc - 29.47N, 93.0W - 1994-11-07"

The Louisiana-Texas Shelf Physical Oceanography Program (LATEX) was sponsored by the Minerals Management Service (MMS) of the U.S. Department of the Interior. Of its three study units, the Texas-Louisiana Shelf Circulation and Transport Processes Study (LATEX A or LATEX Shelf) was conducted by the Texas A&M University System. The LATEX A field program ran from April 1992 to December 1994. The study area encompassed the Texas-Louisiana continental shelf offshore of approximately the 10-m isobath, from the Mississippi River to the Rio Grande. The five major field components were: moored current meter measurements, drifting buoys, hydrography, acoustic Doppler current profiling (Acoustic Doppler Current Profiler (ADCP)), and meteorological buoys.

Tags: a&m, accession, acoustic, active, adcp, and light transmission, available, backscatter, backscattering, beam, beam_transmission_in_sea_water, bird, bottomdepth, center, circulation, conductivity, crs, current, currents, d94j069, data, decent, density, department, depth, descentrate, disk, doppler, downwelling, downwelling irradiance, downwelling_photosynthetic_photon_spherical_irradiance_in_sea_water, drifters, earth, earth science, electrical, expendable bathythermograph, fluorescence, fluoresence, fluorometer, hydrographic, identifier, instrument, instrument1, instrument2, instrument3, instrument4, instrument5, instrument6, instrument7, instrument8, irradiance, latitude, light, longitude, louisiana, miscellaneous, national, ncei, nesdis, noaa, nodc, ocean, ocean optics, ocean pressure, ocean temperature, oceanographic, oceanography, oceans, optical, optical properties, optics, package, package_decent_rate, par, par-sensor, parv, percent, photon, photosynthetic, photosynthetically, photosynthetically active radiation, potential, potential temperature, potentialtemperature, practical, pressure, processes, profile, profiler, properties, radiance, radiation, rate, relative, relative_backscattering, relative_fluoresence, salinity, salinity/density, sbe, scattering, science, sea, sea-bird, sea_water_electrical_conductivity, sea_water_potential_temperature, sea_water_practical_salinity, sea_water_pressure, sea_water_sigma_t, sea_water_temperature, seawater, secchi, sensor, sensors, shelf, sigma, sigmat, spherical, study, temperature, texas, texas-louisiana, texas-louisiana shelf circulation and transport processes study, time, total, transmission, transmissometer, transport, university, velocity, volts, water, water pressure, water temperature, xsv
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
E05 Aanderaa Surface Currents

Ocean observation data from the Northeastern Regional Association of Coastal &amp; Ocean Observing Systems (NERACOOS). The NERACOOS region includes the northeast United States and Canadian Maritime provinces, as part of the United States Integrated Ocean Observing System (IOOS).  These data are served by Unidata's Thematic Realtime Environmental Distributed Data Services (THREDDS) Data Server (TDS) in a variety of interoperable data services and output formats.

Tags: aanderaa, buoy, chemistry, chlorophyll, circulation, component, conductivity, created, current, currents, data, density, department, depth, direction, direction_of_sea_water_velocity, direction_of_sea_water_velocity data_quality, e05, e0501, earth science, east, eastward, eastward_sea_water_velocity, eastward_sea_water_velocity data_quality, electrical, last, latitude, level, lobo, longitude, maine, marine, modified, name, neracoos, north, northward, northward_sea_water_velocity, northward_sea_water_velocity data_quality, o2, ocean, ocean chemistry, ocean circulation, ocean currents, ocean optics, ocean pressure, ocean temperature, ocean waves, ocean winds, oceanography, oceans, optics, oxygen, period, physical, pressure, quality, realtime, record, salinity, salinity/density, school, sciences, sea, sea level pressure, sea_water_temperature, sea_water_temperature data_quality, sea_water_velocity, sea_water_velocity data_quality, seawater, sensor, sigma, sigmat, significant, significant wave height, speed, station, surface, surface winds, temperature, time, turbidity, university, velocity, water, water temperature, wave, wave period, waves, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
C23 â FLRACEP-REACH #1 - Weather and Sea Surface Data (NDBC: 42027)

Timeseries data from 'C23 â FLRACEP-REACH #1 - Weather and Sea Surface Data (NDBC: 42027)' (c23-flracep-reach-1-ndbc-42027)

Tags: aggregate_quality_flag, air_pressure_at_mean_sea_level, air_temperature, altitude, atmosphere, biology, biosphere, earth science, environment, latitude, longitude, ocean, quality_flag, relative_humidity, sea_water_practical_salinity, sea_water_temperature, time, university of south florida coastal ocean monitoring and prediction system (comps), wind_from_direction, wind_speed, wind_speed_of_gust
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
CalHABMAP - HABs Humboldt South Bay data

The California Harmful Algal Bloom Monitoring and Alert Program (CalHABMAP) collects weekly phytoplankton and water quality data at eight piers along the Central and Southern California coast. HABMAP provides timely updates on HAB events, and aids in understanding the timing, extent, and impact of these events on humans and the marine ecosystem.

Tags: acid, air_temperature, akashiwo, alexandrium, algal, ammonia, ammonium, average, bloom, calhabmap, cells, cells/l, ceratium, chemistry, chl, chl1, chl2, chloro, chlorophyll, cochlodinium, code, collected, color, concentration, counting, data, date, day, delicatissima, depth, development, diatoms, dilution, dinoflagellates, dinophysis, dissolved, dissolved nutrients, dissolved o2, domoic, earth, earth science, erddap, filtered, group, gymnodinium, hab, harmful, identifier, latitude, lingulodinium, longitude, mass, mg/m3, mole, mole_concentration_of_ammonium_in_sea_water, mole_concentration_of_nitrate_and_nitrite_in_sea_water, mole_concentration_of_nitrate_in_sea_water, mole_concentration_of_nitrite_in_sea_water, mole_concentration_of_phosphate_in_sea_water, mole_concentration_of_silicate_in_sea_water, n02, ng/m, nh4, nitrate, nitrite, nitzschia, no3, nutrients, o2, ocean, ocean chemistry, ocean color, oceans, oxygen, phaeo, phaeo1, phaeo2, phosphate, phytoplankton, phytoplankton species, po4, polyedrum, prorocentrum, pseudo, pseudo-nitzschia, pst, quality, repository, sample, sampleid, sanguinea, science, sea, sea_water_practical_salinity, sea_water_temperature, seawater, seriata, settled, silicate, species, spp, station, taxonomy, temp, temperature, test, time, total, volume, water
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Fugro Cruise C16215 Line 1220, 75 kHz VMADCP

Program of vessel mount Acoustic Doppler Current Profiler (ADCP) measurements comprising a combination of 300kHz and 75kHz ADCP data collected in the vicinity of the Loop Current and drilling blocks between 2004 and 2007.

Tags: acoustic, adcp, bin, c16215, circulation, current, currents, data, dephs, depth, direction, doppler, earth, earth science, fugro, gas, identifier, inc, latitude, longitude, loop, mount, o&g lc vmadcp program, ocean, ocean circulation, ocean currents, oceans, oil, platform, profiler, program, science, sea, sea_water_speed, sea_water_to_direction, seawater, speed, time, trajectory, various, velocity, vessel, water
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Fugro Cruise C16185 Line 0789, 75 kHz VMADCP

Program of vessel mount ADCP measurements comprising a combination of 300kHz and 75kHz ADCP data collected in the vicinity of the Loop Current and drilling blocks between 2004 and 2007.

Tags: acoustic, adcp, bins, bsee, circulation, coastal, crs, current, currents, data, depth, dir, direction, distance, doppler, drilling, earth science, east, eastward, eastward_sea_water_velocity, gcoos, gulf, identifier, instrument, kika, latitude, longitude, mexico, north, northward, northward_sea_water_velocity, o&g lc vmadcp program, observing, ocean, ocean circulation, ocean currents, ocean temperature, oceans, platform, platform/ocean, profile, profiler, sample, sea, seawater, series, speed, stations, stations/drilling, surface, system, temperature, time, time series, towards, trajectory_id, upward, velocity, vert, water, water temperature
Organization: National Oceanic and Atmospheric Administration, Department of Commerce