AndreaBozzo/ceres-open-data-index huggingface dataset:
Acute bottlenecks to the survival of juvenile Pygoscelis penguins

This data set contains a zipped file with 8 individual .csv files used to support the analysis of survival bottlenecks presented by Hinke et al.(2020), "Acute bottlenecks to the survival of juvenile Pygoscelis penguins occur immediately after fledging". Data include geographical position estimates from satellite telemetry studies on AdÃ©lie (Pygoscelis adeliae), chinstrap (P. antarctica), and gentoo (P. papua) penguins tracked from the Antarctic peninsula region, carcass counts from ship and beach surveys in the study region, fledgling weights, and battery voltage data from telemetry tags.

Multiple datasets are provided. Telemetry data is raw ARGOS data collected from Sirtrak Kiwisat K2G-72A transmitters on Adelie, gentoo, and chinstrap fledlging penguins. Summarized data on cumulative losses of tags from adult birds dervie from Wildlife Computers Spot-275 transmitters. Historical raw data collected by field researchers include fledgling weights and counts of penguin carcass observed at sea and on beaches. Fledgling weights are were collected with spring scales immediatley prior to first departure of fledgling penguins from their natal colony (Adelie and chinstrap) or at a standard age of 85-days after hatch (gentoo). At-sea carcass observations were collected during standard seabird surveys while underway during daylight hours. Beach-cast carcasses of fledgling chinstraps were counted one week after the fledging period at Cape Shirreff, Livingston Island. Recruitment data are based from mark-recapture data and represent proportional returns of individuals from marked cohorts, as updated from a prior report (doi: 10.1007/s00442-007-0781-4)

Tags: adelie, admiralty bay, amlr, amlr predator data, antarctica, archival tag, bransfield strait, brood, cape shirreff, chinstrap, copacabana, doc/noaa/nmfs/swfsc, east antarctica, ecosystem, egg-laying, environmental, fledgling, gentoo, king george island, livingston island, mark-recapture, national marine fisheries service, noaa. u.s. department of commerce, penguins, pygoscelis, recruitment, south orkneys, south shetlands, southwest fisheries science center
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Conductivity-temperature-depth (CTD) data from FRD cruises

This is a repository of unprocessed raw data obtained using the CTD on recent cruises conducted by the SWFSC Fisheries Resources Division.

Tags: conductivity temperature depth, ctd, doc/noaa/nmfs/swfsc, frd and calcofi cruise data, national marine fisheries service, noaa. u.s. department of commerce, southwest fisheries science center
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Pacific Albacore Troll and Pole-and-line Fisheries

The North Pacific and South Pacific Albacore Troll and Pole-and-line Fisheries project contains landings, logbooks, and size composition data from U.S.A. troll and pole-and-line vessels fishing in the North and South Pacific, from 1952 and 1987, respectively, to the present.

Tags: albacore, baitboat, doc/noaa/nmfs/swfsc, jig, landings, logbook, national marine fisheries service, noaa. u.s. department of commerce, north pacific, pacific highly migratory species data, pacific ocean, pole-and-line, size composition, south pacific, southwest fisheries science center, troll
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AMLR Temperature Recording Archival Tags Gentoos 2005-2008 v1.2

Estimates of daily activity and consequent demand for food during winter are scarce for many polar seabirds, yet essential for assessing constraints on foraging effort, demand for food, and potential competition with local fisheries. We affixed archival temperature tags to gentoo penguins (Pygoscelis papua) from two colonies in the South Shetland Islands to measure the frequency, timing, and duration of foraging trips and to estimate minimum food requirements during winter. Foraging trip frequencies ranged from 0.85 to 1.0 trips day-1 and were positively correlated with day length. Early winter foraging trips more closely matched day length than late winter foraging trips. The data suggest that individuals maximize foraging time during the early winter period, likely to recover body mass following the breeding season and molt. The more attenuated response of foraging trip durations to increasing day length in late winter may be related to differences in local resource availability or individual behaviors prior to the upcoming breeding season. Minimum food requirements also exhibited a seasonal cycle with a mid-winter minimum. On average, minimum food requirements were estimated at 0.70 Â± 0.12 kg day-1. Extrapolated to the regional population of gentoo penguins, winter food requirements by gentoo penguins were equivalent to roughly 33% of annual krill catches by commercial fisheries in the South Shetland Island region over the past decade. Current expansion of the gentoo population and the krill fishery in the southern Scotia Sea warrants continued monitoring of gentoo penguins during winter.

Tags: admiralty bay, amlr, amlr temperature recording archival tags gentoos 2005-2008 v1.2, antarctic, antarctica, archival tag, bransfield strait, cape shirreff, copacabana, doc/noaa/nmfs/swfsc, ecosystem, environmental, euphausia superba, gentoo, king george island, krill, livingston island, national marine fisheries service, noaa. u.s. department of commerce, penguins, pygoscelis, seasonality, south shetlands, southwest fisheries science center, temperature, winter consumption
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Habitat Ecology Visual Surveys of Demersal Fishes and Habitats off California

Since 1992, the Habitat Ecology team has been conducting fishery independent, visual surveys of demersal fishes and associated habitats in deep water (20 to 900 meters) off California, using manned submersibles, remotely-operated vehicles, and towed cameras equipped with video cameras, lasers, and CTD. This relational database contains information on counts, sizes, species and habitat types of demersal fishes, corals, and sponges, and location and amount of area surveyed.

Tags: 1992 - current year, california, demersal, doc/noaa/nmfs/swfsc, fishery independent, habitat, habitat ecology team, national marine fisheries service, noaa. u.s. department of commerce, rockfishes, rov, seafloor, southwest fisheries science center, submersible, visual surveys
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Determine movement patterns and survival rates of Central Valley Chinook salmon, steelhead and their predators using acoustic tags.

The projectâs objective is to document movement patterns and survival rates of Chinook salmon, steelhead, green sturgeon, and other fish from several sources in the Central Valley of California. Juvenile salmonids from hatcheries or wild caught are implanted with small acoustic transmitters and the location of the fish are recorded on receivers that are placed throughout the watershed from Redding to the Golden Gate. Over 70 receiver locations with over 150 receivers monitor the movement of these fish. These receivers record the date, time, and unique identification number of transmitters that pass within listening range of the receivers. The first acoustic tagging studies began in 2006 and continue today.

Tags: acoustic telemetry, central valley california, chinook, doc/noaa/nmfs/swfsc, green sturgeon, movement, national marine fisheries service, noaa. u.s. department of commerce, salmon assessment team, southwest fisheries science center, steelhead, survival, tagging
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
FRD Trawl Database

Specimens captured in trawls by the SWFSC Fisheries Resources Division during surveys for coastal pelagic species. Most tows were targeted for coastal pelagic species (e.g., sardine, anchovy, mackerels) using a Nordic trawl (2023 and before) or a Multi-Function Trawl net (2024 and after) on the surface at night. The database includes information on individual trawls, catch data with identification to various taxonomic levels depending on species, length frequencies, and individual length and weight data.

Tags: anchovy, atm, depm, doc/noaa/nmfs/swfsc, frd and calcofi cruise data, jack mackerel, national marine fisheries service, noaa. u.s. department of commerce, pacific mackerel, sardine, southwest fisheries science center
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AIS data

Automatic identification system (AIS) data are used to identify and track vessels for various purposes (primarily navigational safety). These data can be used to study vessel traffic, such as ship routing and speed over ground (SOG). Source data were obtained from the United States Coast Guard Navigation Center (USCG NAVCEN) for the period from June 2008 to December 2015. Derived data resulting from the processing of the source data are described here. This data set presents annual raster data (1 square kilometer grid size) off California from 2008-2015 for cumulative ship traffic density (kilometers/day) and mean SOG (knots; distance-weighted). The universe of data is limited to vessels with a length greater than or equal to 80 meters. The data are analyzed in three groups: freight vessels (container, general cargo, bulk carrier, refrigerated cargo, vehicle carrier, etc.), tanker vessels (crude oil, chemical/products, liquid petroleum gas, etc.) and all vessels (the previously noted vessels, plus passenger vessels and other vessel classes). The data are contained in a file geodatabase format as raster data sets. Metadata for the overall data set are contained at the level of the file geodatabase. The data were generated and used for a research article (Moore et al. 2018):
Moore, T.J., Redfern, J.V., Carver, M., Hastings, S., Adams, J.D., Silber, G.K., 2018. Exploring Ship Traffic Variability off California. Ocean and Coastal Management. https://doi.org/10.1016/j.ocecoaman.2018.03.010
See this manuscript for more information on the data description, issues, and processing methods.

Tags: 2008-2015, ais, annual, automatic identification system, california, doc/noaa/nmfs/swfsc, eez, exclusive economic zone, gis, marine mammal spatial habitat and risk program research portfolio, maritime shipping, mexico, national marine fisheries service, noaa. u.s. department of commerce, northern baja california, ship traffic, southwest fisheries science center, terrestrial ais receivers, vessel density, vessel speed
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Caribbean Seasonal and/or Area Closures GIS data

This data represents 9 geographic areas described in Title 50 CFR Part 622, Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic, Subpart S - Reef Fish Fishery of Puerto Rico and the U.S. Virgin Islands, Subpart V - Queen Conch Resources of Puerto Rico and the U.S. Virgin Islands, and Appendix E - Caribbean Island/Island Group Management Areas.

Tags: caribbean, closed areas, doc/noaa/nmfs/sero, eez, fishery management areas, fishery-dependent, gis, marine protected areas, mpa, national marine fisheries service, nmfs, noaa, non-environmental data, southeast regional office, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Gulf of Mexico Seasonal and/or Area Closures GIS Data

These data represents 21 geographic areas described in Title 50 CFR Part 622, Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic, Subpart B - Reef Fish Resources of the Gulf of Mexico, Subpart C - Shrimp Fishery, Subpart D - Coral and Coral Reefs, Subpart Q - Coastal Migratory Pelagic Resources, and Subpart R - Spiny Lobster Fishery

Tags: closed areas, doc/noaa/nmfs/sero, eez, fishery management areas, fishery-dependent, gis, gulf of mexico, marine protected areas, mpa, national marine fisheries service, nmfs, noaa, non-environmental data, southeast regional office, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Johnsons Seagrass Critical Habitat

These data represent the critical habitat for Johnson's Seagrass as designated by Federal Register Vol. 65, No. 66, Wednesday, April 5, 2000, Rules and Regulations.

Tags: atlantic ocean, biscayne bay, critical habitat, doc/noaa/nmfs/sero, endangered species information, fishery-dependent, florida, fort pierce inlet, gis, hobe sound, indian river lagoon, johnson's seagrass, jupiter inlet, lake worth, lake worth lagoon, lake wyman, national marine fisheries service, noaa, non-environmental data, seagrass, sebastian inlet, southeast regional office, st. lucie inlet, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Elkhorn and Staghorn Corals Critical Habitat

These data represent the critical habitat for elkhorn coral (Acropora palmata) and staghorn coral (A. cervicornis) as designated by 73 FR 72210, November 26, 2008, Rules and Regulations.

Tags: acropora cervicornis, acropora palmata, atlantic ocean, broward county, caribbean, caribbean sea, critical habitat, doc/noaa/nmfs/sero, elkhorn coral, endangered species, endangered species information, fishery-dependent, florida, florida keys, gis, miami-dade county, monroe county, national marine fisheries service, noaa, non-environmental data, palm beach county, puerto rico, southeast regional office, st. croix, st. john, st. thomas, staghorn coral, u.s. department of commerce, virgin islands
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bottomfish Fishing Locations

Bottomfish Sampling data collected on research cruises aboard the Oscar Elton Sette (OES/SE). Additional information about physical specimens collected during OES/SE cruises conducted within waters surrounding the Main and Northwestern Hawaiian Islands can be found in the Bottomfish Sampling Data dataset. THIS IS THE GENERAL LAYOUT FOR FISHING LOCATION DATA, which VARIES DEPENDING ON THE PROJECT (IF TRAPPING OCCURRED OR BOTCAM WAS USED, TAGGING, SHARK DOCUMENTATION ETC.) MODIFIED SLIGHTLY FOR EACH CRUISE DEPENDING ON OBJECTIVES.  USED ON ALL RESEARCH CRUISES ABOARD THE SETTE REGARDLESS OF LOCATION (MHI, JOHNSTON, MARIANA ISLANDS ETC.) AND SMALL BOAT FISHING OPS.

Tags: american samoa, big island, bottomfish, cnmi, doc/noaa/nmfs/pifsc, fishing, frmd, johnston atoll, kona, lhp, mhi, national marine fisheries service, noaa, oes, oscar elton sette, pacific islands fisheries science center, penguin banks, pifsc, survey, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Hawksbill Sea Turtle Critical Habitat

These data represent the critical habitat for hawksbill turtle as designated by Federal Register Vol. 63, No. 46701, September 2, 1998, Rules and Regulations. Redesignated and amended at 64 FR 14607, March 23, 1999.

Tags: caribbean, critical habitat, doc/noaa/nmfs/sero, endangered species, endangered species information, eretmochelys imbricata, fishery-dependent, gis, hawksbill sea turtle, mona island, monito island, national marine fisheries service, noaa, non-environmental data, puerto rico, southeast regional office, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Gulf sturgeon Critical Habitat Units 8-14

These data represent the critical habitat for Gulf Sturgeon as designated by Federal Register Vol. 68, No. 53, Wednesday, March 19, 2003, Rules and Regulations.

Tags: acipenser oxyrinchus desotoi, alabama, apalachicola bay, choctawhatchee bay, critical habitat, doc/noaa/nmfs/sero, endangered species, endangered species information, fishery-dependent, florida, gis, gulf of mexico, gulf sturgeon, lake borgne, lake pontchartrain, louisiana, mississippi, mississippi sound, national marine fisheries service, near shore gulf of mexico, noaa, non-environmental data, pensacola bay, santa rosa sound, southeast regional office, suwannee sound, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Leatherback Sea Turtle Critical Habitat

These data represent the critical habitat for leatherback turtle as designated by Federal Register Vol. 44, No. 17711, March 23, 1979, Rules and Regulations. Redesignated and amended at 64 FR 14067, March 23, 1999.

Tags: 100 fathom curve, caribbean, critical habitat, dermochelys coriacea, doc/noaa/nmfs/sero, endangered species, endangered species information, fishery-dependent, gis, leatherback sea turtle, national marine fisheries service, noaa, non-environmental data, sandy point, southeast regional office, st. croix, u.s. department of commerce, u.s. virgin islands
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Green Turtle Critical Habitat

These data represent the critical habitat for green turtle as designated by Federal Register Vol. 63, No. 46701, September 2, 1998, Rules and Regulations.

Tags: alcarraza, arrecife culebrita, caribbean, cayo ballena, cayo botijuela, cayo de luis pena, cayo lobito, cayo lobo, cayo norte, cayos geniqui, chelonia mydas, critical habitat, culebra island, doc/noaa/nmfs/sero, el mono, endangered species, endangered species information, fishery-dependent, gis, green sea turtle, isla culebrita, las hermanas, los gemelos, national marine fisheries service, noaa, non-environmental data, piedra steven, puerto rico, southeast regional office, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
South Atlantic Seasonal and/or Area Closures GIS data

These data represent 30 geographic areas described in Title 50 CFR Part 622 Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic, Subpart A - General Provisions, Subpart I - Snapper Grouper Fishery of the South Atlantic Region, Subpart J - Shrimp Fishery of the South Atlantic Region, Subpart K - Coral, Coral Reefs, and Live/Hard Bottom Habitats of the South Atlantic Region, Subpart L - Golden Crab Fishery of the South Atlantic Region, Subpart M - Dolphin and Wahoo Fishery Off the atlantic States, Subpart N - Pelagic Sargassum Habitat of the South Atlantic Region, Subpart Q - Coastal Migratory Pelagic Resources, and Subpart R - Spiny Lobster Fishery.

Tags: closed areas, doc/noaa/nmfs/sero, eez, fishery management areas, fishery-dependent, gis, gulf of mexico, marine protected areas, mpa, national marine fisheries service, nmfs, noaa, non-environmental data, south atlantic, southeast regional office, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Seasonal Management Areas for North Atlantic Right Whales GIS data

These data represent Seasonal Mangagement Area locations where regulations implement speed restrictions in shipping areas at certain times of the year along the coast of the U.S. Atlantic seaboard. The purpose of the regulations is to reduce the likelihood of deaths and serious injuries to endangered North Atlantic right whales that result from collisions with ships as designated by 73 FR 60173, October 10, 2008, Rules and Regulations. Sunset clause removed 78 FR 73726, December 9, 2013

Tags: doc/noaa/nmfs/sero, fishery-dependent, marine mammal information, national marine fisheries service, noaa, non-environmental data, north atlantic ocean, sma speed restrictions right whale noaa nmfs, south atlantic ocean, southeast regional office, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Acropora Location Database

The National Oceanic and Atmospheric Administration (NOAA) and the Florida Fish and Wildlife Conservation Commission (FWC) have embarked upon a collaborative effort to produce an online tool to allow for the open dissemination of Acropora-related datasets. An ArcGIS geodatabase has been built with the purpose of effective and accurate depiction of benthic data related to Acropora palmataand A. cervicornis. The geodatabase has been populated with significant multi-agency data from federal, state, university and non-government organizations. These agencies include NOAA, National Park Service, FWC, University of Miami, Univeristy of North Carolina - Wilmington, National Coral Reef Institute and The Nature Conservancy. All datasets include Acropora presence/absence and latitudinal /longitudinal coordinates at the minimum. This project was funded by award NA1ONMF4720029 from the National Oceanic and Atmospheric Administration/National Marine Fisheries Service, U.S. Department of Commerce.

Tags: acropora, caribbean, cervicornis, critical habitat, doc/noaa/nmfs/sero, endangered species information, fishery-dependent, florida keys, geodatabase, national marine fisheries service, noaa, palmata, puerto rico, southeast regional office, u.s. department of commerce, u.s. virgin islands
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Essential Fish Habitat of the Gulf of Mexico GIS data

Essential fish habitat (EFH) for Gulf of Mexico waters and/or substrate areas in the Gulf of Mexico, which may include estuaries and open water from the US/Mexico border to the boundary between the areas covered by the Gulf of Mexico Fishery Management Council (GMFMC) and the South Atlantic Fishery Management Council (SAFMC) from estuarine waters out to depths of 100 fathoms. Essential fish habitat (EFH) consists of areas of higher species density, based on the NOAA Atlas (NOAA 1985) and the functional relationships analysis in the EIS (GMFMC 2004).

Tags: alabama, coastal migratory pelagic resources, coral and coral reef, doc/noaa/nmfs/sero, efh, eis, environmental impact statement, essential fish habitat, essential fish habitat program, fishery management plan, fishery-dependent, florida, gulf of mexcio, gulf of mexico fishery management council, habitat, louisiana, magnuson-stevens fishery conservation and management act, mississippi, national marine fisheries service, noaa, non-environmental data, red drum, reef fish, shrimp, southeast regional office, southeast u.s., spiny lobster, stone crab, texas, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Pacific Islands Region Fishing Permits

The Sustainable Fisheries Division Permits Program issues around 300 permits annually for pelagic longline and troll & handline, bottomfish, crustacean (lobster and shrimp), coral reef, and precious coral fisheries. The permits are for American Samoa, Guam, Hawaii, Northern Mariana Islands, Pacific Remote Islands, and Pacific Marine National Monument areas. These permits are linked to Fishery Ecosystem Plans managing Federal fisheries within the Exclusive Economic Zones around these areas.

Tags: american samoa, bottomfish, cnmi, deepwater shrimp, doc/noaa/nmfs/piro, guam, hawaii, limited entry, lobster, longline, marine national monument fishing, mhi non-commercial bottomfish, national marine fisheries service, noaa, northern mariana islands, pacific islands regional office, pacific islands regional office sustainable fisheries, pacific remote island areas, pria troll and handline, special coral reef ecosystem fishing, u.s. department of commerce, western pacific, western pacific crustaceans, western pacific general longline, western pacific precious coral, western pacific receiving vessel
Organization: National Oceanic and Atmospheric Administration, Department of Commerce