AndreaBozzo/ceres-open-data-index huggingface dataset:
GPM GROUND VALIDATION NCAR CLOUD MICROPHYSICS PARTICLE PROBES GCPEX V1

The GPM Ground Validation NCAR Cloud Microphysics Particle Probes GCPEx data was collected during the GPM Cold-season Precipitation Experiment (GCPEx), which occurred in Ontario, Canada during the winter season of 2011 through 2012. GCPEx addressed shortcomings in the GPM snowfall retrieval algorithm by collecting microphysical properties, associated remote sensing observations, and coordinated model simulations of precipitating snow. The GPM Ground Validation NCAR Cloud Microphysics Particle Probes GCPEx dataset was obtained from three instruments carried aboard the University of North Dakota (UND) Cessna Citation aircraft. These probes, the 2D-C, Cloud Imaging Probe (CIP) and High Volume Precipitation Spectrometer (HVPS-3), collected particle size distributions and particle images which were processed by the National Center for Atmospheric Research (NCAR). Data were collected January 16, 2012 through February 25, 2012. A related cloud microphysics dataset, GPM Ground Validation UND Citation Cloud Microphysics GCPEx is also available.

Tags: atmosphere, clouds, earth-science
Organization: National Aeronautics and Space Administration
CRED Ocean Data Platform (ODP), Acoustic Doppler Profiler (ADP); PRIA, JAR; Long: -160.01553, Lat: -00.37917 (WGS84); Sensor Depth: 15.00m; Data Range: 20020311-20040325.

The Ocean Data Platform (ODP) is placed on the sea floor to measure water current profiles, waves, temperature and conductivity. The ODP consists of an upward looking acoustic doppler current profiler (ADP) (SonTek/YSI ADP, www.ysi.com) and a temperature/conductivity recorder (Model SBE37-SM, Sea-Bird Electronics, Inc., www.seabird.com). This metadata record refers to the SonTek ADP dataset. ADP sensors include three acoustic transducers, internal temperature sensor (temperature data automatically compensate for changes in sound speed), compass/tilt sensor (magnetic heading and 2-axis tilt) and a pressure sensor. When an ODP is recovered, another one is typically deployed in the same place. Time series data combining multiple deployments from a given site may also be available. Please contact CRED with any questions. For program information see the web site https://www.fisheries.noaa.gov/pacific-islands/ecosystems/coral-reefs-pacific

Tags: adcp), biosphere, bleaching, bottom, central pacific ocean, coastal processes, coral diseases, coral reef ecosystem division (cred), coral reefs, corals, coris_metadata, country/territory, earth science, in situ physical, jar_ocean_001, jarvis island, jarvis island (00s160w0001), line islands, mooring, noaa pacific islands fisheries science center, numeric data sets, ocean basin, ocean circulation, ocean currents, ocean data platform (odp), ocean pressure, ocean temperature, ocean waves, oceanographic, oceanography, oceans, pacific ocean, pacific remote island areas, pria, profile, reef assessment and monitoring program (ramp), reef monitoring and assessment, sea level pressure, sea level rise, sea state, significant wave height, sontek/ysi upward looking acoustic doppler current profile (adp, storm surge, surf beat, swells, temperature, thermocline, tidal components, tidal currents, tidal height, tides, united states of america, upwelling, usa minor outlying islands, water temperature, wave direction, wave frequency, wave height, wave length, wave period, wave speed, wave types, wind waves, zoology
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
RNA-Seq transcriptome profiling of soleus from adult and aged mice following disuse muscle atrophy and recovery

Rodent hind limb unloading was used as a model for reduced muscle activity and eventual atrophy. After a 10 day period of unloading mice in this study were  xe2 x80 x9creloaded xe2 x80 x9d for 3 days and regained use of their hind limbs. We report the application of Next-generation sequencing (NGS) technology for high-throughput profiling of mRNA in soleus muscle of adult (6 mo) and aged (22-24 mo) mice. Our goal was to determine the effects of hind limb unloading and reloading on mRNA profiles in soleus muscle and compare between adult and aged mice. We find that there are distinct response in the profile of fatty acid oxidation TCA cycle ETC oxidative phosphorylation gene expression patterns in response to unloading and reloading. The repsonses are generally simialr between young and old mice.

Tags: age, animal-husbandry, hindlimb-unloading, library-construction, mouse-habitation, nucleic-acid-extraction, nucleic-acid-sequencing, sample-collection, sequence-analysis-data-transformation
Organization: National Aeronautics and Space Administration
Flight Crew Physiological Data for Crew State Monitoring

This physiological data was collected from pilot/copilot pairs in and out of a flight simulator.  It was collected to train machine-learning models to aid in the detection of pilot attentive states.
The benchmark training set is comprised of a set of controlled experiments collected in a non-flight environment, outside of a flight simulator. The test set (abbreviated LOFT = Line Oriented Flight Training) consists of a full flight (take off, flight, and landing) in a flight simulator.
The pilots experienced distractions intended to induce one of the following three cognitive states:
Channelized Attention (CA) is the state of being focused on one task to the exclusion of all others. This is induced in benchmarking by having the subjects play an engaging puzzle-based video game.
Diverted Attention (DA) is the state of having one’s attention diverted by actions or thought processes associated with a decision. This is induced by having the subjects perform a display monitoring task. Periodically, a math problem showed up which had to be solved before returning to the monitoring task.
Startle/Surprise (SS) is induced by having the subjects watch movie clips with jump scares.
For each experiment, a pair of pilots (each with its own crew ID) was recorded over time and subjected to the CA, DA, or SS cognitive states. The training set contains three experiments (one for each state) in which the pilots experienced just one of the states. For example, in the experiment labelled CA, the pilots were either in a baseline state (no event) or the CA state. The test set contains a full flight simulation during which the pilots could experience any of the states (but never more than one at a time).
Each sensor operated at a sample rate of 256 Hz. Please note that since this is physiological data from real people, there will be noise and artifacts in the data.

Tags: classification, crew-state-monitoring, csm, flight-crew, flight-simulator, human-dimensions, langley-research-center, physiology, pilot, response, safety
Organization: National Aeronautics and Space Administration
Mlh1 deficiency increases the risk of hematopoietic malignancy after simulated space radiation exposure

Cancer-causing genome instability is a major concern during space travel due to exposure of astronauts to potent sources of high-linear energy transfer (LET) ionizing radiation. Hematopoietic stem cells (HSCs) are particularly susceptible to genotoxic stress, and accumulation of damage can lead to HSC dysfunction and oncogenesis. Our group recently demonstrated that aging human HSCs accumulate microsatellite instability coincident with loss of MLH1, a DNA Mismatch Repair (MMR) protein, which could reasonably predispose to radiation-induced HSC malignancies. Therefore, in an effort to reduce risk uncertainty for cancer development during deep space travel, we employed an Mlh1+/- mouse model to study the effects high-LET 56Fe ion space-like radiation. Irradiated Mlh1+/- mice showed a significantly higher incidence of lymphomagenesis with 56Fe ions compared to Î³-rays and unirradiated mice, and malignancy correlated with increased MSI in the tumors. In addition, whole-exome sequencing analysis revealed high SNVs and INDELs in lymphomas being driven by loss of Mlh1 and frequently mutated genes had a strong correlation with human leukemias. Therefore, the data suggest that age-related MMR deficiencies could lead to HSC malignancies after space radiation, and that countermeasure strategies will be required to adequately protect the astronaut population on the journey to Mars.

Tags: genotype-ionizing-radiation, treatment-protocol-nucleic-acid-extraction-library-construction-nucleic-acid-sequencing
Organization: National Aeronautics and Space Administration
T Cell Activation in Microgravity Compared to 1g (Earth  s) Gravity

This study tested the hypothesis that transcription of immediate early genes is inhibited in T cells activated in microgravity (mg). Immunosuppression during spaceflight is a major barrier to safe long-term human space habitation and travel. The goals of these experiments were to prove that mg was the cause of impaired T cell activation during spaceflight as well as understand the mechanisms controlling early T cell activation. T cells from 4 human donors were stimulated with concanavalin A (ConA) and anti-CD28 onboard the International Space Station (ISS). An onboard centrifuge was used to generate a 1g simultaneous control to isolate the effects of mg from other variables of spaceflight. Microarray expression analysis after 1.5 hours of activation demonstrated that mg- and 1g-activated T cells had distinct patterns of global gene expression and identified 47 genes that were significantly differentially down-regulated in mg. Importantly several key immediate early genes were inhibited in mg. T cells were isolated from human volunteers. T cells from each donor were kept separate and loaded into individual chambers in separate cassettes for the following treatments: mg non-activated mg activated and 1g activated. Therefore samples represent biological triplicates. Experimental units were launched into space and placed into the KUBIK facility onboard the International Space Station. The 1g units were placed in the central centrifuge positions and centrifuged with an applied 1g force. The mg units were place in the static positions for continued mg exposure. After 30 minutes of pre-incubation mg non-activated units were fixed by addition of RNALater (QIAGEN Valencia CA) removed from the incubator and stored in 4 xc2 xb0C. The mg and 1g activated units were injected with final concentration 10mg/ml Con A and 4mg/ml anti-CD28. These cassettes were replaced into KUBIK on either the centrifuge or static positions and activated for 1.5 hours. Activation was stopped with the addition of RNALater and the units were then moved to 4 xc2 xb0C storage. All units were returned to Earth for analysis.

Tags: bioassay_data_transformation, feature_extraction, gravity, grow, hybridization, image_aquisition, labeling, nucleic_acid_extraction, p-gse38836-1, p-gse38836-2, p-gse38836-3, p-gse38836-4, p-gse38836-5, p-gse38836-6, p-gse38836-7, p-gse38836-8, specified_biomaterial_action, treatment
Organization: National Aeronautics and Space Administration
Radiation responses in peripheral white blood cells of smokers and non-smokers

Understanding the possible impact of potential confounding factors is necessary for any approach to radiation biodosimetry. Potential confounding factors have not been fully addressed for gene expression-based biodosimetry approaches such as we are developing. To begin addressing this need we have used an ex vivo irradiated peripheral blood cell model to investigate the potential effect of smoking on the global radiation gene expression response and looked for genes that respond to radiation differently in smokers and non-smokers and also in males and females. The results indicate that only a small number of genes may be significantly confounded by either factor supporting the idea of developing peripheral blood gene expression strategies for radiation biodosimetry. Blood from each of 24 different donors was exposed to four doses of ionizing radiation (0 0.1 0.5 or 2 Gy) and analyzed using single-color microarray hybridization. The donors represented equal numbers of male and female smokers (1 or more packs a day) and non-smokers. There are 95 data sets in the study as the sample from one of the female smokers exposed to 2 Gy was lost.

Tags: age, bioassay_data_transformation, donor, feature_extraction, gender, grow, hybridization, image_aquisition, ionizing-radiation, labeling, nucleic_acid_extraction, p-gse23515-1, p-gse23515-2, p-gse23515-3, p-gse23515-4, p-gse23515-5, p-gse23515-6, p-gse23515-7, p-gse23515-8, radiation-dose, smoking-status, specified_biomaterial_action
Organization: National Aeronautics and Space Administration
Expression Data from International C.elegans Experiment 1st

The effect of microgravity on gene expression in C.elegans was comprehensively analysed by DNA microarray. This is the first DNA microarray analysis for C.elegans grown under microgravity. Hyper gravity and clinorotation experiments were performed as reference against the flight experiment.

Tags: bioassay_data_transformation, feature_extraction, gravity, grow, hybridization, image_aquisition, labeling, nucleic_acid_extraction, p-gse36358-1, p-gse36358-2, p-gse36358-3, p-gse36358-4, p-gse36358-5, p-gse36358-6, p-gse36358-7, p-gse36358-8, specified_biomaterial_action, stress
Organization: National Aeronautics and Space Administration
MASTER: BP Oil Spill Mapping, Louisiana-Gulf of Mexico-Wisconsin, Fall, 2010

This dataset includes Level 1B (L1B) and Level 2 (L2) data products from the MODIS/ASTER Airborne Simulator (MASTER) instrument. The raw data were collected during 9 flights aboard a NASA ER-2 aircraft over the Gulf of Mexico and portions of California, Colorado, Arizona, Utah, Idaho, New Mexico, Texas, Arkansas, Illinois, Wisconsin, Michigan, Louisiana, Mississippi, and Florida from 2010-07-31 to 2010-09-01. A primary purpose of this deployment was to collect imagery related to the Deepwater Horizon-BP Oil Spill that occurred in late April 2010 in the Gulf of Mexico.  Data products include L1B georeferenced multispectral imagery of calibrated radiance in 50 bands covering wavelengths of 0.460 to 12.879 micrometers at approximately 50-meter spatial resolution. Derived L2 data products are emissivity in 5 bands in thermal infrared range (8.58 to 12.13 micrometers) and land surface temperature. The L1B file format is HDF-4, and L2 products are provided in ENVI and KMZ formats. In addition, the dataset includes the flight path, spectral band information, instrument configuration, ancillary notes, and summary information for each flight, and browse images derived from each L1B data file.

Tags: earth-science, infrared-wavelengths, land-surface, spectral-engineering, surface-radiative-properties, surface-thermal-properties, visible-wavelengths
Organization: National Aeronautics and Space Administration
QuikSCAT Scatterometer Inter-Calibrated ESDR Level 2 Ocean Surface Equivalent Neutral Wind Vectors and Wind Stress Vectors Version 1.0

This dataset contains the first provisional release of the MEaSUREs-funded Earth Science Data Record (ESDR) of inter-calibrated ocean surface wind vectors (equivalent neutral and true 10m) and wind stress vectors derived from QuikSCAT scatterometer observations. The primary purpose of this release is for provisional evaluation by the NASA International Ocean Vector Winds Science Team (IOVWST). As such, this release is not intended for science-quality research, and is subject to future revision based on feedback provided by the IOVWST. The wind vector and stress retrievals are provided on a non-uniform grid within the swath (Level 2  (L2) products) at 12.5 km pixel resolution. Each L2 file corresponds to a specific orbital revolution (rev) number, which begins at the southernmost point of the ascending orbit.

Tags: earth-science, ocean-winds, oceans
Organization: National Aeronautics and Space Administration
Transcription profiling of atm mutant adm mutant and wild type whole plants and roots of Arabidopsis after gamma ray irradiation in a time series

Whole seedlings of wild type (4d) and atm mutants (4d) have been analyzed after a gamma ray irradiation of 0.75h 1.5h 3h & 5h (time course). Roots of wt (4d) atm (3d) and atr (4d) mutants have been analyzed after a 1h irradiation. Ataxia Telangiectasia Mutated (ATM) encodes a large protein with a phosphatidylinositol 3-kinase (PI3K)-like domain at the C terminus (reviewed by Rotman and Shiloh 1998). PI3K-related proteins make up a large family of Ser-Thr protein kinases numerous members of which are involved in the regulation of cell cycle progression responses to DNA damage and the maintenance of genomic stability (Hoekstra 1997). AtATM plays an essential role in meiosis and in the somatic response to DNA damage in plants similar to the function of ATM in mammals and other eukaryotes. Ataxia telangiectasia-mutated and Rad3-related (ATR) plays a central role in cell-cycle regulation transmitting DNA damage signals to downstream effectors of cell-cycle progression.

Tags: data-collection, genotype, growth-protocol, ionizing-radiation, labeling, nucleic-acid-hybridization, organism-part, p-mexp-27428, p-mexp-27449, p-mexp-27465, p-mexp-27468, p-mexp-27469, p-mexp-27470, p-mexp-28392, p-mexp-7099, p-mexp-7100, rna-extraction, time, treatment-protocol
Organization: National Aeronautics and Space Administration
Goddard and Caldwell Oahu, Hawaii Surf Observation Dataset for 1968-2004 (NODC Accession 0001754)

Surf reports are typically made several times per day at select locations around Oahu, primarily by Honolulu City and County lifeguards and the Surf News Network, Inc. Wave heights are reported in Hawaii Scale Feet, which systematically underestimates breaker size by as much as one-half. Although exactly when and why this tendency originated is highly disputed, it became the primary means of communicating surf size by the late 1960s. From publicly available surf reports and other notes from reputable surfers, Mr. Larry Goddard logged heights from 1968 through September 1987 and Mr. Patrick Caldwell has done similarly from September 1987 to 2004. The caretakers of the dataset typically cross-check observations among the various reporters for quality control. The daily value in the GC set represents the upper end of the reported height range, which is roughly equivalent to H1/10, for the observing time and location with the highest breakers along a given coast facing a similar direction. For the north shore, most observations are taken at Sunset Point, which is usually one of the areas of highest surf under the dominant northwest swells. For days of extreme surf with heights greater than 15 HSF, visual observations are reported from Waimea Bay, where breakers are closer to shore. For the south shores, Ala Moana is usually the reporting site. Observations from the west and east side of Oahu have also been recorded although these reports are of lower quality. Comparisons of the GC database to 1981-2002 data from NOAA buoy 51001, which is located roughly 400 km west-northwest of Oahu, show the north shore surf observations are temporally consistent with the shoaling-only, buoy-estimated breaker heights and have an uncertainty of 10 to 15% of the surf height.

Tags: ala moana, central pacific ocean, coastal studies, coris_metadata, country/territory, diamond head, earth science, hawaii, hawaiian islands, honolulu, makaha, makapuu, mhi, north beach, north pacific, north shore, numeric data sets, oahu, oahu (21n157w0003), oahu island, ocean basin, ocean waves, oceanography, oceans, pacific ocean, south shore, sunset point, surf height, surface, united states of america, visual observation, waimea bay, wave height
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
FERMIGTRIG - Fermi GBM Trigger Catalog

This table lists all of the triggers observed by one or more of the 14 GBM detectors (12 NaI and 2 BGO). Note that there are two Browse catalogs resulting from GBM triggers. All GBM triggers are entered in the Trigger Catalog, but only those triggers classified as bursts are entered in the Fermi GBM Burst Catalog. Thus, a burst will be found in both the Trigger and Burst Catalogs. The Burst Catalog analysis requires human intervention; therefore, GRBs will be entered in the Trigger Catalog before the Burst Catalog. The latency requirements are 1 day for triggers and 3 days for bursts.

Tags: astrophysics, fermi, gamma-ray-bursts, gbm, lat, light-arcs, particle-physics, photons, pulsars, solar-flares, space-science
Organization: National Aeronautics and Space Administration
MAPDS

The datasets contain the retrieved aerosol and ocean color properties from AirHARP measurements using the FastMAPOL algorithm and adaptive data screening (MAPDS). One open ocean scene is included with cirrus cloud adaptive screened:
ACEPOL_AIRHARP.20171023201049.L2.FastMAPOLV1.3.nc

Details of the retrieval and data screening algorithm are available in the publication titled "Adaptive Data Screening for Multi-Angle Polarimetric Aerosol and Ocean Color Remote Sensing Accelerated by Deep Learning" (https://doi.org/10.3389/frsen.2021.757832)

Tags: aerosols, automatic-differentiation, cloud-masking, deep-learning, ocean-color, pace, polarimetry, remote-sensing
Organization: National Aeronautics and Space Administration
NOAA-20 VIIRS Level-4 Global Binned Carbon Data, version 2022.0

The Visible and Infrared Imager/Radiometer Suite (VIIRS) is a multi-disciplinary instrument that is being flown on the Joint Polar Satellite System (JPSS) series of spacecraft, including the Suomi National Polar-orbiting Partnership (S-NPP) that launched in October 2011.  JPSS is a multi-platform, multi-agency program that consolidates the polar orbiting spacecraft of NASA and the National Oceanic and Atmospheric Administration (NOAA).  S-NPP is the initial spacecraft in this series, and VIIRS is the successor to MODIS for Earth science data product generation.  VIIRS has 22 spectral bands ranging from 412 nm to 12 nm.  There are 16 moderate-resolution bands (750m at nadir), 5 image-resolution bands (375m), and one day-night band (DNB).

Tags: earth-science, ocean-chemistry, oceans
Organization: National Aeronautics and Space Administration
Terra MODIS Global Mapped Remote-Sensing Reflectance (RRS) - NRT Data, version R2022.0

The Ocean Biology DAAC produces near real-time (quicklook) products using the best-available combination of ancillary data from meteorological and ozone data. As such, the inputs and the calibration used are less than optimal. Quicklook products provide a snapshot of the data during a short time period within a single orbit.

Tags: aerosols, atmosphere, earth-science, national-geospatial-data-asset, ngda, ocean-optics, oceans
Organization: National Aeronautics and Space Administration
ASTEROID LIGHTCURVE DERIVED DATA V12.0

This is a compilation of published rotational parameters derived from lightcurve data for asteroids, based on the Warner et al. (2009) Asteroid Lightcurve Database. This is the version released on Mar. 2, 2011. In addition to reported rotational parameters by individual paper, there is a summary file with the values adopted by Harris, Warner, and Pravec as the most likely correct values for each asteroid. The data set also contains files listing known binary asteroids and 'tumbling' asteroids.

Tags: asteroid, support-archives
Organization: National Aeronautics and Space Administration