AndreaBozzo/ceres-open-data-index huggingface dataset:
GLM-AED calibration inputs and outputs

In this data release, we provide data to describe the water quality in Green Lake, Wisconsin, from 1905 to 2020, primarily the constituents for which it is impaired, including near-surface total phosphorus concentrations and metalimnetic dissolved oxygen concentrations, and quantify the water and phosphorus inputs to the lake. We also provide inputs to and outputs from the General Lake Model coupled to the Aquatic Ecodynamics modeling library (GLM-AED) hydrodynamic water-quality model to describe the factors that have caused low dissolved oxygen concentrations in the metalimnion of Green Lake; and quantify how changes in phosphorus loading should affect near-surface total phosphorus and chlorophyll-a concentrations, water clarity, and the minimum dissolved oxygen concentrations in the metalimnion the lake. This data release includes 5 zipped files in child items: (1) Met_Stream_Lake_data, which contains morphology, meteorology, atmospheric deposition, water quality data and mass balance data for the lake; (2) GLM_calibration, which contains inputs to and outputs from the GLM model for which physical parameters in the model were calibrated; (3) GLMAED_Calibration, which contains inputs to and outputs from the GLM-AED model for which physical, chemical, and biological parameters in the model were calibrated; (4) GLMAED_MOMCauses, which contains all of the data needed to run the model to determine the causes of metalimnetic oxygen minima (MOM), and the outputs from the model; and (5) GLMAED_ChangesInPhosphorusLoading, which contains all of the data needed to run the model to determine how dissolved oxygen, near surface total phosphorus, and near-surface chlorophyll-a concentrations respond to changes in phosphorus loading from the watershed, and the outputs from the model.

Tags: aquatic-biology, atmospheric-deposition, biota, chlorophyll, dissolved-oxygen, freshwater-ecosystems, glm-aed-model, green-lake, green-lake-county, lake, limnology, metalimnetic, meteorology, minimum, morphology, nutrients, plankton, secchi-depth, streams, surface-water-quality, temperature, total-phosphorus, usgs-60dcbeb9d34e3a6dca224f85, water-quality, wisconsin
Organization: Department of the Interior
PAC_PRS - Parsed seabed data for the continental margin of the U.S. Pacific Coast (California, Oregon, Washington) from usSEABED (pac_prs.txt)

This data layer (PAC_PRS.txt) is one of five point coverages of known sediment samples, inspections, and probes from the usSEABED data collection for the U.S. Pacific continental margin integrated using the dbSEABED software system. This data layer represents the parsed (PRS) output of the dbSEABED mining software. It contains the numeric results parsed from text-based descriptions held in the data resource files (DRF). Because it relies on descriptions, the PRS data are less precise than the extracted data (PAC_EXT), but may include information on outsized elements and consolidation that are often not in lab-analyzed data. This file contains the same data fields as the extracted (PAC_EXT) and calculated (PAC_CLC) data files, and the three files may be combined.

Tags: analyses, benthic-habitats-pacific-project, biogenic-sediments, borderland, cmgp, coastal-and-marine-geology-program, components, continental-island-shelf, continental-island-slope, dbseabed, descriptions, distributions, estuarine-coastal, features, genesis, geology, geoscientificinformation, gravel-deposits, grays-harbor, instaar, institute-of-arctic-and-alpine-research, location, marine-aggregates-resources-and-processes-project, marine-nearshore, marine-offshore, marine-sediments, monterey-bay, national-marine-fisheries-service, national-oceanic-and-atmospheric-administration, nmfs, noaa, nonmetallic-mineral-resources, northern-california-ecoregion, oceans, oregon-washington-vancouver-coast-and-shelf-ecoregion, pacific-coast, pacific-coastal-and-marine-science-center, pacific-ocean, pcmsc, puget-sound, rock-substrate, san-francisco-bay, san-pedro-bay, sand-deposit, sand-deposits, sand-resources, santa-monica-bay, sea-floor, sea-floor-characteristics, seabed, sediment, sediment-chemistry, sediment-composition, sediment-resources, sediment-textures, southern-california-bight-ecoregion, state-of-california, state-of-oregon, state-of-washington, stratigraphic-sequence, substrate, terrigenous-sediments, u-s-geological-survey, uc, unconsolidated-deposits, unconsolidated-mineral-substrate, united-states-of-america, university-of-colorado, usgs, usgs-8cad9b4f-0c74-43e5-8874-af205ae7ed70, usseabed, west-coast, whsc, willapa-bay, woods-hole-science-center
Organization: Department of the Interior
Influenza A Virus Data from Emperor Geese, Alaska

Data set containing avian influenza A virus (IAV) sampling information for Emperor Geese in Alaska, 2015-2017. The data are in three tables: 1) collection data and IAV screening results from fecal samples at several sites in southwestern Alaska, 2) results of blocking enzyme-linked immunosorbent assay (bELISA) tests for IAV antibodies in blood serum collected from nesting female Emperor geese near the Manokinak River on the Yukon-Kuskokwim River Delta, and 3) results of influenza virus microneutralization assays to test for the specific IAV subtypes in the Manokinak samples.

Tags: adak-island, alaska, animals-vertebrates, aquatic-animals, avian-influenza, biota, birds, cinder-lagoon, cinder-river, environment, enzyme-linked-immunosorbent-assay, health, health-and-disease, hemagglutination-inhibition-tests, immunologic-techniques, influenza, influenza-a-virus, izembek-national-wildlife-refuge, kodiak-island, manokinak-river, nelson-lagoon, shemya-island, usgs-asc210, viral-diseases, virus-diseases, virus-microneutralization, viruses, waterfowl, wildlife-disease
Organization: Department of the Interior
Exit Creek Transect Survey, June 2013

This dataset consists of survey data from transects surveyed June 10-12, 2013 along Exit Creek, a stream draining Exit Glacier in Kenai Fjords National Park, Alaska. The survey was conducted using Global Positioning System Real-Time Kinetic (GPS-RTK) transceivers and tied to monuments previously established by the U.S. Forest Service. This survey repeated points from an initial (2011) survey of Transects 2 and 3 by the U.S. Forest Service and established Transects 4-7. The intent of the survey transects is to monitor changes in elevation across the braid plain of Exit Creek.

Tags: alaska, alluvial-fans, deglaciation, environment, exit-creek, exit-glacier, flood-plains, flooding, glaciers, harding-icefield, ice-ages, inlandwaters, kenai-fjords-national-park, kenai-peninsula, little-ice-age, paradise-creek, paradise-glacier, resurrection-river, rivers, sediments, seward, usgs-asc121
Organization: Department of the Interior
Plasmodium Parasite Infection Data from Mosquitoes Collected in South-central Alaska, 2016

This data set includes two tables associated with a study of Plasmodium parasite infection in mosquitoes collected in south-central Alaska during the summer of 2016. The first table contains data regarding mosquito collection from three sites using CO2 baited CDC light traps. Mosquitoes were sorted and pooled according to collection date, genus, and location and subsequently screened for Plasmodium parasite infection using molecular methods. The second table contains results of Plasmodium parasite screening of pooled mosquito abdomen and head/thorax segments using PCR. Parasite genetic data is provided as GenBank accession numbers for any samples that tested positive for Plasmodium infection.

Tags: anchorage, animals-invertebrates, arthropods, biological-science-disciplines, biology, biota, blood-parasites, disease, disease-detection, disease-reservoirs, disease-vectors, diseases, dna-sequencing, eagle-river, ecological-dynamics, environment, genetics, health, health-and-disease, hexapods, host-parasite-interactions, insects, malaria, natural-science-disciplines, parasitic-diseases, parasitism, parasitology, pathologic-processes, polymerase-chain-reaction, protozoa, species-population-interactions, state-of-alaska, usgs-asc212, vector-borne-diseases
Organization: Department of the Interior
Blood Parasite Infection Data from Northwestern Crows (Corvus caurinus), Alaska, 2007-2008

This data set consists of two tables associated with a study of Haemosporidian parasite infection in Northwestern Crows (Corvus caurinus) sampled at six locations throughout southcentral and southeast Alaska in 2007-2008. The first table contains species, location, banding, and morphometric data for all samples. The second table contains results from heamosporidian parasite screening of crow blood samples using molecular techniques. Genomic DNA was extracted from blood samples and screened for the presence of Haemoproteus, Plasmodium, and Leucocytozoon blood parasites using a nested-PCR method. Parasite genetic data is provided as GenBank accession numbers for any samples that tested positive for haemosporidian infection

Tags: alaska, animals-vertebrates, avian-physiology, biological-science-disciplines, biology, biosphere, biota, birds, blood-parasites, disease, disease-vectors, dna-sequencing, ecological-dynamics, environment, genetic-diversity, genetic-variance, genetics, haemosporidians, haines, hematozoa, homer, juneau, kenai, life-sciences, natural-science-disciplines, parasitic-diseases, parasitism, parasitology, pathologic-processes, perching-birds, polymerase-chain-reaction, sciences, seward, species-population-interactions, usgs-asc213, valdez, vector-borne-diseases, wildlife-biology, zoology
Organization: Department of the Interior
1-meter backscatter imagery collected in 2012 by the U.S. Geological Survey in the Connecticut River during field activity 2012-024-FA (GeoTIFF image)

A geophysical and geological survey was conducted at the mouth of the Connecticut River from Old Saybrook to Essex, Connecticut, in September 2012. Approximately 230 linear kilometers of digital Chirp subbottom (seismic-reflection) and 234-kilohertz interferometric sonar (bathymetric and backscatter) data were collected along with sediment samples, riverbed photographs, and (or) video at 88 sites within the geophysical survey area. Sediment grab samples were collected at 72 of the 88 sampling sites, video was acquired at 68 sites, and photographs of the river bottom were taken at 38 sites. These survey data are used to characterize the riverbed by identifying sediment-texture and riverbed morphology. More information can be found on the web page for the Woods Hole Coastal and Marine Science Center field activity: https://cmgds.marine.usgs.gov/fan_info.php?fan=2012-024-FA. Data collected during the 2012 survey can be obtained here: https://doi.org/10.5066/F7PG1Q7V.

Tags: atlantic-ocean, backscatter, cmgp, coastal-and-marine-geology-program, connecticut, connecticut-river, essex, estuary, field-activity-2012-024-fa, field-activity-number-12024, geomorphology, geoscientificinformation, geotiff, imagerybasemapsearthcover, interferometric-sonar, interferometry, long-island-sound, marine-geology, marine-geophysics, north-america, oceans, old-saybrook, r-v-rafael, raster, river, river-bed, riverbed, sea-floor, sea-floor-acoustic-reflectivity, sea-floor-characteristics, sea-submetrix, sea-swathplus, seafloor, sedimentary-environments, surface, swath-backscatter, u-s-geological-survey, united-states, usgs, usgs-6a9b9629-312a-4709-8ed1-087a9c7a67b8, whcmsc, woods-hole-coastal-and-marine-science-center
Organization: Department of the Interior
Airborne geophysical survey: Southern Nevada, Nevada

Aeromagnetic data were collected along flight lines by instruments in an
aircraft that recorded magnetic-field values and locations.  This dataset
presents latitude, longitude, altitude, and magnetic-field values.

Tags: aeromagnetic-data, aeromagnetic-surveying, airborne-surveys, f04015-mohave, f06027-inyo, f06071-san-bernardino, f32003-clark, f32023-nye, field-monitoring-stations, geophysical-surveys, geophysics, geospatial-datasets, magnetic, magnetic-field-earth, magnetic-surveys, nevada, nv, residual-magnetic-field, southern-nevada, total-field, united-states, usgs-8703e881-ea21-4eea-912c-2ee15be14b3b
Organization: Department of the Interior
Exit Creek Water Surface Survey, June 2013

This dataset consists of survey data from a longitudinal profile of water surface surveyed June 23-24, 2013 at Exit Creek, a stream draining Exit Glacier in Kenai Fjords National Park, Alaska. The survey was conducted using a total station at multiple instrument locations linked using visual estimates of instrument locations from an orthophoto. The intent of the survey was to provide detailed water surface elevations to compare to a 2012 digital elevation model.

Tags: alaska, alluvial-fans, deglaciation, environment, exit-creek, exit-glacier, flood-plains, flooding, glaciers, harding-icefield, ice-ages, inlandwaters, kenai-fjords-national-park, kenai-peninsula, little-ice-age, paradise-creek, paradise-glacier, resurrection-river, rivers, sediments, seward, usgs-asc122
Organization: Department of the Interior
Attributes for NHDPlus Version 2.1 Reach Catchments and Modified Routed Upstream Watersheds for the Conterminous United States: Annual Average Runoff (millimeters) from 1945 - 2015

This tabular data set represents annual average runoff values (millimeters) described in Wolock and McCabe (2017), compiled for the NHDPlus version 2 data suite (NHDPlusV2) for the conterminous United States. Linkage of the runoff data with NHDPlusV2 is achieved through the common unique identifier COMID. The runoff values are estimated both for: 1) individual reach catchments and 2) reach catchments accumulated upstream through the river network. The reach catchment information characterizes data at the local scale, whereas the catchments accumulated through the river network characterize cumulative upstream conditions.  The network-accumulated values are derived using two methods: 1) divergence routing and 2) total upstream routing. Both approaches use a modified routing database (Schwarz and Wieczorek, 2017) to navigate the NHDPlusV2 reach network and to aggregate (accumulate) the metrics derived from the reach catchment scale.

Tags: average-annual-runoff, catchment, inlandwaters, nawqa, nhdplus, sparrow, usgs-57bf5e25e4b0f2f0ceb75b77, water-balance-model
Organization: Department of the Interior
Influenza A Antibodies in Pacific (Gavia pacifica), Red-throated (G. stellata), and Yellow-billed Loons (G. adamsii) in Alaska, 2008-2017

This data set contains three spreadsheets with results of Influenza A Virus (IAV) screening in blood from Pacific, Red-throated, and Yellow-billed Loons at three locations in Alaska. Loons were captured along the Beaufort Sea Coast, Chukchi Sea Coast, and Yukon-Kuskokwim Delta from 2008-2017. Three different tests were used and the results are presented in separate spreadsheets. All serum samples were screened for IAV antibodies using a blocking enzyme-linked immunosorbent assay (bELISA). A subsample were screened using agar gel immunodiffusion (AGID), and hemagglutination inhibition assays (HI).

Tags: alaska, animal-diseases, animals-vertebrates, aquatic-birds, avian-influenza, beaufort-sea, bering-land-bridge-national-preserve, biota, bird-diseases, birds, chipp-river, chukchi-sea, colville-river-delta, diagnosis, ecological-dynamics, environment, enzyme-linked-immunosorbent-assay, health, health-and-disease, hemagglutination-inhibition-tests, immunologic-techniques, influenza, kasegaluk-lagoon, loons, manokinak-river, migratory-birds, north-slope, pathology, plant-and-animal-testing, point-lay, serologic-tests, serology, species-population-interactions, usgs-asc214, viral-diseases, virology, virus-diseases, viruses, wildlife-disease
Organization: Department of the Interior
Hydrologic Data Sites for Grand County, Utah

This map shows the USGS (United States Geologic Survey), NWIS (National
Water Inventory System) Hydrologic Data Sites for Grand County, Utah.
		
The scope and purpose of NWIS is defined on the web site:
		
http://water.usgs.gov/public/pubs/FS/FS-027-98/

Tags: altitude, environment, estuary, geoscientificinformation, grand, grand-county, hole-depth, hydrologic-data-site, inlandwaters, lake, reservoir, spring, state-of-utah, stream, usgs-13bd244b-dc39-4b3d-b236-4a899ffbd414, utah, water-use, well, well-depth
Organization: Department of the Interior
Minisparker seismic-reflection data collected between Point Sur and Morro Bay, offshore of central California, from 2011-09-12 to 2011-09-26 (USGS field activity B-05-11-CC)

This dataset includes raw, and swell-filtered, high-resolution seismic-reflection data, collected by the U.S. Geological Survey (USGS) in 2011, between Point Sur and Morro Bay in central California.

Tags: bathymetry, bathymetry-and-elevation, big-sur, cmg, cmgp, coastal-and-marine-geology-program, continental-margins, geoscientificinformation, minisparker, morro-bay, oceans, pacific-coastal-and-marine-science-center, pacific-ocean, pcmsc, san-diego, san-luis-obispo-county, seismic-reflection-profiling, state-of-california, sub-bottom-profiling, u-s-geological-survey, usgs, usgs-60357521-0944-405b-8335-b67df7eaca13
Organization: Department of the Interior
Coastwide Reference Monitoring System (CRMS) 2005, 2008, 2012, 2015 and 2018 Site 0641 land-water matrix

Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in Louisiana rely on monitoring to determine the efficacy of these projects. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum. As part of CRMS, land and water classifications are created from Digital Orthophoto Quarter Quadrangles (DOQQs) approximately every three years at all CRMS sites. This dataset consists of a matrix of five land-water products (2005, 2008, 2012, YYYY and 2018).  The resulting matrix has 32 possible classes defined by the combination of land and water categories on those five dates.

Tags: alteration-of-wetland-habitats, cartography, coastal, coastal-louisiana, crms, doqq, emergent-wetland, forested-wetland, geographic-information-system, imagerybasemapsearthcover, land-water, louisiana, mapping, marsh, protection, restoration, scrub-shrub-wetland, state-of-louisiana, usgs-611f13f8d34e40dd9c01d27d, wetland, wetland-ecosystems, wetland-restoration
Organization: Department of the Interior
Hybrid bathymetric-topographic digital elevation model for the Upper Missouri River near Wolf Point, MT

The dataset contains a hybrid bathymetric-topographic digital elevation model (DEM) of the Upper Missouri River near Wolf Point, MT. The DEM was generated within ArcGIS by compositing bathymetric data from multiple single beam sonar surveys collected between June 2018 and July 2019 with previously existing topographic data collected from airborne LiDAR into a triangulated irregular network (TIN). The resulting TIN was then manually edited and exported as a raster for use in developing a hydrodynamic model.

Tags: aquatic-biology, biota, hydrology, missouri-river, montana, usgs-656e25d3d34e7ca10833f982, water-resources
Organization: Department of the Interior
Sockeye Salmon (Oncorhynchus nerka) Body Condition and Water Temperature Along the Pilgrim River, Northwestern Alaska, 2013-2016

This dataset is four tables with: 1) the body condition and egg counts of Sockeye Salmon captured at several sites along the Pilgrim River 2013-2016, 2) water temperature from 10 automated temperature dataloggers during the summers of 2013-2016, 3) results from an experiment to determine the effect of elevated water temperature on levels of Heat Shock Protein (HSP70) in captive juvenile Sockeye Salmon, and 4) the geographic coordinates of temperature dataloggers and fish capture sites.

Tags: alaska, anadromous-species, animals-vertebrates, aquatic-biology, aquatic-ecosystems, biological-productivity, biosphere, biota, climate-change, dispersal-organisms, environment, fish, migratory-species, nome, oncorhynchur-nerka, pilgrim-river, ray-finned-fishes, rivers, rivers-stream-habitat, salmons-trouts, sockeye-salmon, spawning-migrations, temperature-tolerance, usgs-asc215
Organization: Department of the Interior
Sea Otter Aerial Survey Data from Glacier Bay National Park and Preserve, 1999-2012

The data package "Sea Otter Aerial Survey Data from Glacier Bay National Park and Preserve, 1999-2012" provides raw data for examining abundance and distribution of northern sea otters (Enhydra lutris kenyoni) in Glacier Bay National Park and Preserve in southeast Alaska, based on data collected during a series of population-wide aerial surveys. The USGS aerial sea otter surveys have been completed multiple times using consistent methodology involving aerial-based counts. The surveys provide data and a population estimate that Park and other Federal management agencies use for decision making and planning additional research. This data package includes a series of files with the raw digital data that was used for population estimates and population modeling found in related manuscripts.

Tags: abundance-organisms, aerial-surveys, alaska, animals-vertebrates, biota, carnivores, ecology, ecosystem-monitoring, environment, glacier-bay-national-park-and-preserve, gulf-of-alaska, marine-mammals, population-density, population-dynamics, usgs-asc216
Organization: Department of the Interior
Katahdin Woods and Waters National Monument 4-Band Aerial Imagery Mosaics - Deasey Pond and Hunt Farm Units

Katahdin Woods and Waters National Monument was established on August 24, 2016. The monument spans mountains and forest lands in north central Maine.
High-resolution aerial imagery was collected on October 5, 2019 with a Phase One iXU-R 180 RGB camera co-mounted with a Phase One iXU-RS 160 Achromatic camera. Images from the two cameras are merged to create 4-band imagery that can be displayed as either true-color (RGB) or color-infrared (CIR). The imagery has a resolution of approximately 0.15 meter/pixel (6 inches).

Tags: imagerybasemapsearthcover, katahdin-woods-and-waters-national-monument, maine, usgs-6357f8a3d34ebe4425031fa9
Organization: Department of the Interior
Exit and Paradise Creek Fluvial Features, 2012

This dataset presents delineations of the braid plains of Exit and Paradise Creeks in Kenai Fjords National Park, Alaska for 2012 conditions. A braid plain can be defined generally as the area over which a braided river shifts, and can include active braid plain (the suite of wetted channels and largely unvegetated intervening bars) and inactive braid plain (vegetated formerly occupied channels and bars still accessible by braiding without substantial bank erosion). An additional category of transitional braid plain here describes areas where vegetation is disturbed by recent sediment transport but not fully removed. Because processes are changing as Exit Glacier retreats, selected former fluvial surfaces are no longer expected to be accessible by typical braiding and may be removed from the braid plain. For 2012 conditions, inactive braid plain mapping was only conducted on Exit Creek downstream of the prominent moraines dating to the 1800s.

Tags: alaska, alluvial-fans, deglaciation, environment, exit-creek, exit-glacier, flood-plains, flooding, glaciers, harding-icefield, ice-ages, inlandwaters, kenai-fjords-national-park, kenai-peninsula, little-ice-age, paradise-creek, paradise-glacier, resurrection-river, river-basins, rivers, seward, usgs-asc127
Organization: Department of the Interior