AndreaBozzo/ceres-open-data-index huggingface dataset:
NCCOS Assessment: Fertilization cross results examining genetic relatedness impact on successful reproduction in three species of reef building corals in the Florida Reef Tract in 2019 and 2022 (NCEI Accession 0289357)

Acropora cervicornis, A. palmata and Orbicella faveolata are important reef-building coral species in the Florida Reef Tract (FRT). These species have experienced alarming declines throughout the FRT, resulting in an increased risk of inbreeding depression and susceptibility to decreased fitness in surviving colonies. Acropora cervicornis, A. palmata and O. faveolata are broadcast spawners, introducing genetic diversity through sexual recombination of gametes during annual spawning events. Successful reproduction during this time is critical for curbing the deleterious effects of inbreeding depression, and in successfully restoring wild colonies to self-sustaining levels of genetic diversity. A critical step in the reproductive cycle of these species is the success of gamete fertilization following mass spawning events. Several abiotic causes of gametic incompatibilities have been reliably observed in these species, and incompatibility between certain genotypes has been shown to occur.

This dataset represents the collection of gametes from three coral species following nine spawning events in the Florida Keys during two spawning years (2019 and 2022), reciprocal fertilization trials with gametes from each parent and determined fertilization success for each cross.

Additionally, tissue fragments were collected from each A. cervicornis parent, DNA was isolated from the tissue and single nucleotide polymorphism analyses were performed using the Axiom Coral-Algae Genotyping array (Axiom AcropSNP, ThermoFisher Scientific). This data package contains images of coral eggs post fertilization trial and the results in spreadsheet format. The raw A. cervicornis single nucleotide polymorphism (SNP) data are also provided.

Tags: 31230, acropora cervicornis, acropora palmata, atlantic ocean, axiom coral-algae genotyping array, biosphere, coastal change, corals, country/territory, earth science, esa listed species, florida, florida reef tract, genetic data sets, genetic relatedness: does it matter for successful coral sexual reproduction?, genotyping, key largo (25n080w0010), laboratory experiment, larvae, microscope images, monroe county, north atlantic ocean, ocean basin, oceanography, orbicella faveolata, percent coral fertilization, reproduction, restoration, sexual reproduction, single nucleotide polymorphism (snp) data of acropora cervicornis, tavernier (24n080w0006), u.s. states and territories, united states of america, upper florida keys, visual images, w29gp1, waterbodies, zoology
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Nutrients data from bottle casts in the Bering Sea from R/V ALPHA HELIX as part of the Inner Shelf Transport and Recycling Project 1986-07-04 to 1986-09-25 (NCEI Accession 0000293)

Nitrate, nitrite, phosphate, silicate, and other data were collected from R/V ALPHA HELIX from July 4, 1986 to September 25, 1986. Data were submitted by University of Alaska - Fairbanks; Institute of Marine Science and California Dept of Fish and Game as part of the Inner Shelf Transport and Recycling Project (ISHTAR). Data were collected using bottle casts in the Bering Sea.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Dissolved inorganic carbon (DIC), total alkalinity and other hydrographic and chemical variables collected from discrete samples and profile observations during the USCGC Healy cruise HLY0902 (EXPOCODE 33HQ20090403) in the Bering Sea from 2009-04-03 to 2009-05-12 (NCEI Accession 0189648)

This dataset includes discrete profile measurements of dissolved inorganic carbon (DIC), total alkalinity, temperature, salinity and nutrients during USCGC Healy cruise HLY0902 (EXPOCODE 33HQ20090403) in the Bering Sea from 2009-04-03 to 2009-05-12. The cruise was funded by the National Science Foundation (NSF) for the Bering Sea Ecosystem Study-Bering Sea Integrated Ecosystem Research Program (BEST-BSIERP) and supported by numerous agencies and institutions. The CTD operations on the cruise were managed by personnel from NOAA/PMEL in the EcoFOCI program, with technical expertise from Scripps Institution of Oceanography personnel, and deployment assistance from Healy personnel.

Tags: 33hq20090403, alkali, bering sea, chukchi sea, ctdsal, ctdtmp, discrete measurement, hly0902, nitrat, nitrit phspht, north pacific ocean, ocean carbon and acidification data system (ocads) project, oceanography, silcat, tcarbn
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
High-resolution CTD/STD data from R/V WECOMA in the North Pacific Ocean from 1980-07-22 to 1980-12-02 (NCEI Accession 8500214)

This dataset includes high-resolution CTD/STD data from R/V WECOMA in the North Pacific Ocean from 1980-07-22 to 1980-12-02.

Data has been processed by NODC to the NODC standard High-Resolution CTD/STD (F022) format.

The F022 format contains high-resolution data collected using CTD (conductivity-temperature-depth) and STD (salinity-temperature-depth) instruments. As they are lowered and raised in the oceans, these electronic devices provide nearly continuous profiles of temperature, salinity, and other parameters. Data values may be subject to averaging or filtering or obtained by interpolation and may be reported at depth intervals as fine as 1m. Cruise and instrument information, position, date, time and sampling interval are reported for each station. Environmental data at the time of the cast (meteorological and sea surface conditions) may also be reported. The data record comprises values of temperature, salinity or conductivity, density (computed sigma-t), and possibly dissolved oxygen or transmissivity at specified depth or pressure levels. Data may be reported at either equally or unequally spaced depth or pressure intervals. A text record is available for comments.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Dissolved inorganic carbon (DIC), pH on total scale, total alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations obtained during the R/V Mirai cruise GOSHIP_S04I_2013 (EXPOCODE 49NZ20130106) in the Indian Ocean and Southern Oceans from 2013-01-06 to 2013-02-15 (NCEI Accession 0156925)

This dataset consists of discrete profile measurements of dissolved inorganic carbon (DIC), total alkalinity, pH on total scale, CTD temperature, salinity, dissolved oxygen, nutrients, chlorofluorocarbons (CFC-11, CFC-12, CFC113), sulfur hexafluoride (SF6), fluoro and chlorophyll obtained during the R/V Mirai cruise GOSHIP_S04I_2013 (EXPOCODE 49NZ20130106) in the Indian Ocean and Southern Oceans from 2013-01-06 to 2013-02-15. These data were collected by Hiroshi Uchida of Japan Agency for Marine-Earth Science and Technology (JAMSTEC) and Akihiko Murata of Meteorological Research Institute as part of the GOSHIP_S04I_2013 dataset. CDIAC associated the following cruise ID(s) with this dataset: GOSHIP_S04I_2013

Tags: 49nz20130106, alkali, cfc-11, cfc-12, cfc113, chlora, ctdoxy, ctdsal, ctdtmp, discrete measurement, fluoro, goship_s04i_2013, nitrat, nitrit, ocean carbon and acidification data system (ocads) project, oceanography, oxygen, ph_tmp, ph_tot, phspht, profile, s04i, salnty, sf6, silcat, southern ocean, tcarbn, xmiss
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Dissolved inorganic carbon (DIC), total alkalinity, pH on total scale, nutrients, water temperature, salinity and other variables collected from profile and discrete samples observations during the NOAA Ship Pisces cruise PC2305 (EXPOCODE 334B20231027) in the New York Bight, Northeast U.S. Shelf, North Atlantic Ocean from 2023-10-27 to 2023-11-13 (NCEI Accession 0303262)

This data set consists of dissolved inorganic carbon (DIC), total alkalinity, pH on total scale, nutrients, water temperature, salinity and other variables collected from profile and discrete samples observations during the NOAA Ship Pisces cruise PC2305 (EXPOCODE 334B20231027) in the New York Bight, Northeast U.S. Shelf, North Atlantic Ocean from 2023-10-27 to 2023-11-13. Increasing amounts of atmospheric carbon dioxide from human industrial activities are causing changes in global ocean carbon chemistry ultimately resulting in a reduction in pH, a process termed ocean acidification. Studies have demonstrated adverse effects on calcifying organisms, particularly some invertebrates, corals, sea urchins, pteropods, and coccolithophores, but also on species of commercial interest such as oysters or crabs. In support of the coastal monitoring and research objectives of the NOAA Ocean Acidification Program (OAP), the Ecosystem Monitoring Cruises (ECOMON) are utilized to collect water samples to measure water column inorganic carbon and hydrographic parameters including nutrients. Samples are collected at three depths (surface, mid-depth and near bottom) at select stations on a quarterly basis in the northeastern Atlantic continental shelf region off the United States. Water samples are sent to and analyzed by scientists at the Atlantic Oceanographic & Meteorological Laboratory (AOML) for dissolved inorganic carbon, pH and total alkalinity concentrations. Additional samples are analyzed for nutrient concentrations at the University of Maine. These data are used to monitor short-long term coastal ocean acidification trends.

Tags: 334b20231027, ammonia, coastal, ctdoxy, ctdoxymg, ctdprs, ctdsal, ctdtmp, depth_sampling, depth_station, dic, discrete measurement, new york bight, nitrit+nitrat, north atlantic ocean, northeast u.s. shelf, ocean acidification program (oap), ocean carbon and acidification data system (ocads) project, oceanography, pc2305, ph, phspht, profile, sigma-theta, silcat, talk
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Dissolved inorganic carbon (DIC), total alkalinity, pH on total scale, temperature, salinity, dissolved oxygen, nutrients, and other measurements collected from profile and discrete sample observations during the R/V Ryofu Maru III cruise rf202006 (EXPOCODE 49UP20200730) in the Pacific Ocean from 2020-07-30 to 2020-09-09 (NCEI Accession 0253361)

This dataset includes discrete profile measurements of dissolved inorganic carbon (DIC), total alkalinity, pH on total scale, temperature, salinity, dissolved oxygen, nutrients, and other measurements collected from profile and discrete sample observations during the R/V Ryofu Maru III cruise rf202006 (EXPOCODE 49UP20200730) in the Pacific Ocean from 2020-07-30 to 2020-09-09.

Tags: 49up20200730, alkali, ctdsal, ctdtmp, discrete measurement, jma, nutrients, ocean carbon and acidification data system (ocads) project, oceanography, oxygen, pacific ocean, ph_tot, profile, rf202006, salnty, tcarbn
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Coral Reef Ecosystem and Larval Research Consisting Of Biologic Data from the Nancy Foster in Caribbean Sea and Gulf of Mexico from April 11, 2015 to June 24, 2018 (NCEI Accession 0293057)

National Oceanic and Atmospheric Administration (NOAA) scientists from the Southeast Fisheries Science Center (SEFSC) and Atlantic Oceanographic and Meteorological Laboratory (AOML), working with scientists from the University of the Virgin Islands (UVI) in St. Thomas conducted a multi-year interdisciplinary research project which was a continuation of the 2007-2011 project  using the NOAA Ship Nancy Foster to conduct biological and physical oceanographic surveys of the Virgin Island's (VI) bank ecosystems and surrounding regional waters as well as areas around Jamaica, Cuba and the Gulf of Mexico. The long-term sustainability of fisheries in the VI and surrounding regions is dependent on a comprehensive understanding of regional spawning aggregations, larval transport, and overall larval recruitment in the study area.

This survey sampled water properties, currents, and dispersal and transport of settlement-stage larvae in the VI and neighboring regions. Data in this archival package includes: processed larval fish data collected from the various net tows (BONGO, MOCNESS, etc.) , processed data from all conductivity, temperature, depth (CTD) casts, processed data from all lowered acoustic Doppler profiler (LADCP) casts, processed hull-mounted acoustic Doppler current profiler (SADCP), processed sea surface, flow-through data collected with the ship's thermosalinograph (TSG) and fluorometer collected aboard NOAA Ship Nancy Foster during cruises NF-15-02, NF-15-03, NF-16-02, NF-16-03, NF-17-03 and NF-18-03 from 2015-04-11 to 2018-06-24.

Tags: atlantic ocean, bx4fc2, caribbean sea, country/territory, cuba, dominican republic, jamaica, lesser antilles, ocean basin, oceanography, u. s. virgin islands, u. s. virgin islands (17n064w0000), united states of america, virgin islands
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bathythermograph (XBT) data from SANDS in the North Atlantic Ocean from 1969-01-17 to 1969-01-20 (NCEI Accession 7000258)

This dataset includes bathythermograph (XBT) data from SANDS in the North Atlantic Ocean from 1969-01-17 to 1969-01-20.

Data has been processed by NODC to the NODC standard Bathythermograph (XBT) (C116) format.

The C116/C118 format contains temperature-depth profile data obtained using expendable bathythermograph (XBT) instruments. Cruise information, position, date and time were reported for each observation. The data record was comprised of pairs of temperature-depth values. Unlike the MBT Data File, in which temperature values were recorded at uniform 5 m intervals, the XBT data files contained temperature values at non-uniform depths. These depths were recorded at the minimum number of points ("inflection points") required to accurately define the temperature curve. Standard XBTs can obtain profiles to depths of either 450 or 760 m. With special instruments, measurements can be obtained to 1830 m. Prior to July 1994, XBT data were routinely processed to one of these standard types. XBT data are now processed and loaded directly in to the NODC Ocean Profile Data Base (OPDB). Historic data from these two data types were loaded into the OPDB.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Data Accompanying Manuscript "Potential for regional resilience to ocean warming and acidification extremes: Projected vulnerability under contrasting pathways and thresholds" from 1975-01-01 to 2100-12-31 (NCEI Accession 0305815)

This dataset contains daily model output from GFDL-ESM4.1 characterizing surface ocean temperature, aragonite saturation state, pCO2, and pH for time slices of historical (1975-2014), SSP1-2.6 (2061-2100), and SSP3-7.0 (2061-2100) simulations.

Tags: co3, co3satarag, model output, ocean acidification program (oap), ocean carbon and acidification data system (ocads) project, oceanography, phos, spco2, world-wide distribution
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Synoptic Bi-monthly and storm response water quality sampling in Southern Kaneohe Bay, Hawaii, from November 2007 - April 2009 (NCEI Accession 0062644)

Synoptic sampling including water column profiles and collected surface water samples was conducted on a bi-monthly basis throughout the rainy season (October-May) and on a monthly basis in the dry season (June-September) at nine locations in southern Kaneohe Bay in support of the Coral Reef Instrumented Monitoring Platform (CRIMP) program.  Another dozen or so ancillary stations were also monitored selectively.  Storm events were defined as greater than 5.1 cm of rain at the Luluku rain gain in less than 24 hours. The nine southern bay stations were sampled daily for one week after or until no obvious visual evidence of the storm runoff remained.

Tags: (spcond is specific conductivity used to calculate salinity), ammonium (nh4+), chlorophyll-a, coastal data, depth, dissolved oxygen, dissolved oxygen charge, dissolved oxygen concentration, dissolved silica (sico2), fluorescence, hawaii, kaneohe bay, nitrate (no3-), nitrite (no2-), north pacific, oahu, oceanography, ph, phmv, phosphate (po43-), salinity, spcond, turbidity, water properties, water quality data, water temperature
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bathythermograph (MBT) data from HAVERFIELD in the East China Sea, North Pacific Ocean, and others from 1967-04-25 to 1967-09-01 (NCEI Accession 6700521)

This dataset includes bathythermograph (MBT) data from HAVERFIELD in the East China Sea, North Pacific Ocean, Philippine Sea, and South China Sea from 1967-04-25 to 1967-09-01.

Data has been processed by NODC to the NODC standard Bathythermograph (MBT) (C128) format.

The C128 format is used for temperature-depth profile data obtained using the mechanical bathythermograph (MBT) instrument. The maximum depth of MBT observations is approximately 285 m. Therefore, MBT data are useful only in studying the thermal structure of the upper layers of the ocean. Cruise information, date, position, and time are reported for each observation. The data record comprises pairs of temperature-depth values. Temperature data in this file are recorded at uniform 5 m depth intervals.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Underway total alkalinity, water temperature, salinity and other variables collected from surface seawater during the R/V Atlantis Atlantic Zone Monitoring Program (AZMP2022) cruise (EXPOCODE 33AT20220319) in U.S. and Canadian East Coast waters and the Labrador Sea, North Atlantic Ocean from 2022-03-19 to 2022-05-16 (NCEI Accession 0288995)

This data package contains underway total alkalinity, water temperature, salinity and other variables collected from surface seawater during the R/V Atlantis Atlantic Zone Monitoring Program (AZMP2022) cruise (EXPOCODE 33AT20220319) in U.S. and Canadian East Coast waters and the Labrador Sea, North Atlantic Ocean from 2022-03-19 to 2022-05-16. Data were collected from the ship's underway seawater supply during a transit from Woods Hole MA to Greenland. This effort was part of the jointly-funded NOAA-DFO grant entitled "Improving Regional Northwest Atlantic Observations Through Enhanced Collaboration". Along with total alkalinity, corresponding temperature and salinity measurements are included.

Tags: 33at20220319, azmp2022, coastal, discrete measurement, labrador sea, north atlantic ocean, oap, ocean carbon and acidification data system (ocads) project, oceanography, sss, sst, surface underway, ta, u.s. and canadian east coast
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
High-resolution ocean and atmosphere pCO2 time-series measurements from mooring Crescent_64W_32N in the North Atlantic Ocean (NCEI Accession 0117059)

This dataset includes chemical, meteorological, physical and time series data collected from Mooring_CRESCENT_64W_32N in the North Atlantic Ocean from 2010-11-27 to 2018-07-09. These data include air-sea difference of partial pressure of carbon dioxide (pCO2), barometric pressure, oxygen, pCO2 in atmosphere, pCO2 in water, sea surface salinity, sea surface temperature and pH on total scale. The Moored Autonomous pCO2 (MAPCO2Â®) instruments used to collect these data include Bubble type equilibrator for autonomous carbon dioxide (CO2) measurement, Carbon dioxide (CO2) gas analyzer, Humidity Sensor, and oxygen meter. The Global CO2 Time-series and Moorings Project involves international groups from 18 countries who have mounted sensors on moored buoys to provide high resolution time-series measurements of atmospheric boundary layer and surface ocean CO2 partial pressure (pCO2). The CO2 Time-series and Moorings Project is coordinated by UNESCO International Ocean Carbon Coordination Project (IOCCP).

Tags: 316420101127, 316420120229, 316420130417, 316420140721, 316420150729, 316420160813, atlantic ocean, bermuda pedestal, co2 air qf, co2 sw qf, crescent reef bermuda, date time, dfco2, dpco2, fco2 air (sat), fco2 sw (sat), h2o air, h2o sw, licor atm pressure, licor temp, mapco2 %o2, mooring, mooring_crescent_64w_32n, mooring_crescent_64w_32n_apr2013_mar2014, mooring_crescent_64w_32n_aug2016_aug2017, mooring_crescent_64w_32n_feb2012_feb2013, mooring_crescent_64w_32n_jul2014_jul2015, mooring_crescent_64w_32n_jul2015_apr2016, mooring_crescent_64w_32n_nov2010_feb2012, ocean carbon and acidification data system (ocads) project, oceanography, pco2 air (wet), pco2 sw (wet), ph qf, ph sw, salinity, sst, time series, time-series and moorings, xco2 air (dry), xco2 air (wet), xco2 sw (dry), xco2 sw (wet)
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Conductivity, Temperature and Depth (CTD) data from ALPHA HELIX from Chukchi Sea and other northern seas from 1992-03-16 to 1992-10-27 (NCEI Accession 9300161)

The Conductivity, Temperature and Depth (CTD) and other data were collected in Gulf of Alaska, Chukchi Sea, and NW Pacific (limit-180). Data was collected from cruises HX 161, HX 163, HX 165 and HX 167 of R/V ALPHA HELIX. The data was collected over a period spanning from March 16, 1992 to October 27, 1992. Data was submitted in one exabyte cassette by Dr. Thomas C. Royer, Institute of Marine Science, University of Alaska, Fairbanks, AK. CTD data is available in F022-CTD-Hi Resolution file format of NODC.

The F022 format contains high-resolution data collected using CTD (conductivity-temperature-depth) and STD (salinity-temperature-depth) instruments. As they are lowered and raised in the oceans, these electronic devices provide nearly continuous profiles of temperature, salinity, and other parameters. Data values may be subject to averaging or filtering or obtained by interpolation and may be reported at depth intervals as fine as 1m. Cruise and instrument information, position, date, time and sampling interval are reported for each station. Environmental data at the time of the cast (meteorological and sea surface conditions) may also be reported. The data record comprises values of temperature, salinity or conductivity, density (computed sigma-t), and possibly dissolved oxygen or transmissivity at specified depth or pressure levels. Data may be reported at either equally or unequally spaced depth or pressure intervals. A text record is available for comments.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Bathythermograph (XBT) data from VICTORIA in the North Atlantic Ocean from 1969-05-17 to 1969-05-19 (NCEI Accession 7001169)

This dataset includes bathythermograph (XBT) data from VICTORIA in the North Atlantic Ocean from 1969-05-17 to 1969-05-19.

Data has been processed by NODC to the NODC standard Bathythermograph (XBT) (C116) format.

The C116/C118 format contains temperature-depth profile data obtained using expendable bathythermograph (XBT) instruments. Cruise information, position, date and time were reported for each observation. The data record was comprised of pairs of temperature-depth values. Unlike the MBT Data File, in which temperature values were recorded at uniform 5 m intervals, the XBT data files contained temperature values at non-uniform depths. These depths were recorded at the minimum number of points ("inflection points") required to accurately define the temperature curve. Standard XBTs can obtain profiles to depths of either 450 or 760 m. With special instruments, measurements can be obtained to 1830 m. Prior to July 1994, XBT data were routinely processed to one of these standard types. XBT data are now processed and loaded directly in to the NODC Ocean Profile Data Base (OPDB). Historic data from these two data types were loaded into the OPDB.

Tags: oceanography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce