AndreaBozzo/ceres-open-data-index huggingface dataset:
Data Sources for the Analyses

Links are provided for the National Wetlands Inventory, National Hydrography Dataset, and the WorldClim-Global Climate Data source data websites. 

This dataset is associated with the following publication:
Lane , C., and E. D'Amico. Identification of Putative Geographically Isolated Wetlands of the Conterminous United States.   JAWRA. American Water Resources Association, Middleburg, VA, USA,  online, (2016).

Tags: geographically-isolated-wetlands
Organization: U.S. Environmental Protection Agency
Magnetic graphitic carbon nitride: its applicationin the C-& H-activation of amines.

Magnetic graphitic carbon nitride, Fe@g-C3N4, has been synthesized by adorning graphitic carbon nitride (g-C3N4) support with iron oxide via non-covalent interaction. The magnetically recyclable catalyst showed excellent reactivity for expeditious C-H activation and cyanation of amines. 

This dataset is associated with the following publication:
Verma, S., R.B. Nasir Baig, H. Changseok, M. Nadagouda , and R. Varma. Magnetic graphitic carbon nitride: its applicationin the C–H activation of amines.   CHEMICAL COMMUNICATIONS. Royal Society of Chemistry, Cambridge,  UK, 51(85): 15554 - 15557, (2015).

Tags: c-h-activation, earth-abundant-materials, graphitic-carbon-nitride, sustainable-materials-management
Organization: U.S. Environmental Protection Agency
PNW Hydrologic Landscape Class

Work has been done to expand the hydrologic landscapes (HLs) concept and to develop an approach for using it to address streamflow vulnerability from climate change.  This work has included development of the HL classification framework and its application to Oregon, use of the HL classes to predict where a simple lumped hydrologic model accurately predicts daily streamflow, use of HL information to model the presence of cold-water patches at tributary confluences, and combining Oregon HL results with temperature and precipitation predictions to examine how HLs would vary as a result of climate change.  As a part of the current work, the HL approach has been expanded to the Pacific Northwest (Oregon, Washington, and Idaho) based on a revision of the approach that makes it more broadly applicable. This revised approach has several advantages compared with the original approach:  it is not limited to areas that have an aquifer permeability map; it uses a flexible approach to converting a nationally available geospatial dataset into assessment units; and it is more robust.  These improvements should allow the revised HL approach to be applied more often in situations requiring hydrologic classification, and allow greater confidence in results.  This effort paves the way for a climate change analysis for the Pacific Northwest that is currently underway, as well as expansion into the southwest (California, Arizona, and Nevada).  This dataset contains a high resolution version of the PNW HL maps along with shape files. 

This dataset is associated with the following publication:
Leibowitz , S., R. Comeleo , P.J. Wigington, Jr., M. Weber , E.A. Sproles, and K.A. Sawicz. Hydrologic Landscape Characterization for the Pacific Northwest, USA.   JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION. American Water Resources Association, Middleburg, VA, USA, 52(2): 473-493, (2016).

Tags: geospatial-analysis, hydrologic-classification, hydrologic-cycle, national-hydrography-dataset, nhd, pacific-northwest, rivers-streams, runoff, watersheds
Organization: U.S. Environmental Protection Agency
Complex watersheds, collaborative teams: Assessing pollutant presence and effects in the San Francisco Delta

Chemical monitoring data and biological data from field collected samples. 

This dataset is associated with the following publication:
Biales , A., D. Denton , D. Riordan, R. Breuer, A. Batt , D. Crane, and H. Schoenfuss. Complex watersheds, collaborative teams: Assessing pollutant presence and effects in the San Francisco Delta.   Integrated Environmental Assessment and Management. Allen Press, Inc., Lawrence, KS, USA, 11(4): 674-688, (2015).

Tags: san-francisco, surface-water, vitellogenin, watershed-assessment
Organization: U.S. Environmental Protection Agency
United States Geological Survey discharge data from five example gages on intermittent streams

The data are mean daily discharge data at United States Geological Survey gages.  Once column provides the date (mm/dd/yyyy) and the other column provides the mean daily discharge in cubic feet per second. 

This dataset is associated with the following publication:
Costigan, K., K. Jaeger, C. Goss, K. Fritz , and P. Goebel. Understanding controls on flow permanence in intermittent rivers to aid ecological research: integrating meteorology, geology and land cover.   ECOHYDROLOGY. Wiley Interscience, Malden, MA, USA,  online, (2016).

Tags: connectivity, continuity, flow-cessation, network-expansion, temporary-streams
Organization: U.S. Environmental Protection Agency
Literaure search for intermittent rivers research using ISI Web of Science

The dataset is the bibliometric information included in the ISI Web of Science database of scientific literature.  Table S2 accessible from the dataset link provides bibliometric information included in the literature search.  Table S1 provides the parameters used searching the ISI Web of Science database for each of the subdisciplines. 

This dataset is associated with the following publication:
Leigh, C., A. Boulton, J. Courtwright, K. Fritz , C. May, R. Walker, and T. Datry. Ecological research and management of intermittent rivers: an historical review and future directions.   FRESHWATER BIOLOGY. Blackwell Publishing, Malden, MA, USA, 61(8): 1181–1199, (2016).

Tags: biogeochemistry, ephemeral-stream, fish, invertebrate, temporary-stream
Organization: U.S. Environmental Protection Agency
Evaluation of improved land use data and canopy representation in BEIS with biogenic VOC measurements in California

The link provided access to all the datasets and metadata used in this manuscript for the model development and evaluation per Geoscientific Model Development's publication guidelines with the exception of the model output due to its size. 

This dataset is associated with the following publication:
Bash , J., K. Baker , and M. Beaver. Evaluation of improved land use and canopy representation in BEIS v3.61 with biogenic VOC measurements in California.   Geoscientific Model Development. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 9: 2191-2207, (2016).

Tags: beis, biogenic-voc, isoprene, megan
Organization: U.S. Environmental Protection Agency
CalNex Observational Data

Observations made during the 2010 CalNex measurement campaign. 

This dataset is associated with the following publication:
Woody , M., K. Baker , P. Hayes, J. Jimenez, B. Koo, and H. Pye. Understanding sources of organic aerosol during CalNex-2010 using the CMAQ-VBS.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 16: 4081-4100, (2016).

Tags: calnex, cmaq, organic-aerosols, volatility-basis-set
Organization: U.S. Environmental Protection Agency
Modeling the current and future roles of particulate organic nitrates in the southeastern US

Links point to the NOAA data archive of observational data and the supplement of the article which this data supports. No model data was uploaded due to its size. All updates to CMAQ used in this work are available in the public release of CMAQv5.1 (available through github or the CMAS Center). 

This dataset is associated with the following publication:
Pye , H., D. Luecken , L. Xu, C.M. Boyd, N.L. Ng, K. Baker , B.R. Ayres, J. Bash , K. Baumann, W.P.L. Carter, E. Edgerton, J.L. Fry, B. Hutzell , D. Schwede , and P.B. Shepson. Modeling the current and future role of particulate organic nitrates in the southeastern United States.   Environmental Science & Technology Letters. American Chemical Society, Washington, DC, USA, 49(24): 14195-14203, (2015).

Tags: aerosol, monoterpenes, nitrate, nox, organic-nitrate, secondary-organic-aerosol, soa, soas
Organization: U.S. Environmental Protection Agency
LJFO00000000, LJFQ00000000, LJFT00000000, LJFU00000000, LJFX00000000, LJFY00000000

Draft genome sequences of six Mycobacterium immunogenum strains isolated from a chloraminated drinking water distribution system simulator subjected to changes in operational parameters. 

This dataset is associated with the following publication:
Gomez-Alvarez, V., and R. Revetta. Draft Genome Sequences of Six Mycobacterium immunogenum, Obtained from a Chloraminated Drinking Water Distribution System Simulator.   Genome Announcements. American Society for Microbiology, Washington, DC, USA, 4(1): e01538-15, (2016).

Tags: chloramine, drinking-water, genome, mycobacterium, sequences
Organization: U.S. Environmental Protection Agency
Effects of Cold Temperature and Ethanol Content on VOC Emissions from Light-Duty Gasoline Vehicles

Supporting information Table S6 provides emission rates in g/km of volatile organic compounds measured from gasoline vehicle exhaust during chassis dynamometer testing. Vehicles operated on ethanol blended fuels, E0, E10 and E85. Test temperatures were -7 and 24 degrees C. Data are average of replicate tests and listed by test condition and driving phase. 

This dataset is associated with the following publication:
George , I., M. Hays , R. Snow , J. Faircloth , B. George , T. Long , and R. Baldauf. Cold temperature and biodiesel fuel effects on speciated VOC emissions from diesel trucks.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 48(24): 14782-14789, (2014).

Tags: air-toxics, biofuels, dynamometer, vehicle-emissions
Organization: U.S. Environmental Protection Agency
Quantitative Prediction of Repeat Dose Toxicity Values using GenRA

Per Imran Shah, this was the Data used in and published as supplemental material for this manuscript.
Table S1. Aggregated point of departure (POD) data obtained from ToxRefDB v2.0. 
Table S2. Chemical structure descriptor data from DSSTox.
Table S3. Chemical cluster membership.
Table S5. GenRA optimal predictions for each endpoint category and cluster.


Tags: dsstox
Organization: U.S. Environmental Protection Agency
Illilouette Creek Basin Lidar Survey, Yosemite Valley, CA 2018

This lidar dataset was collected by NCALM for Sally Thompson at the  University of California, Berkeley.  This study aims to assess the occurrence and characteristics of post-fire erosion gullies caused by the Empire Fire in Illilouette Creek Basin, California.  The study area covers approximately 74 km2 in Yosemite National Park, California.

Organization: OpenTopography
Copernicus GLO-90 Digital Surface Model

 The Copernicus DEM is a Digital Surface Model (DSM) which represents the surface of the Earth including buildings, infrastructure and vegetation. This DSM is derived from an edited DSM named WorldDEM, where flattening of water bodies and consistent flow of rivers has been included. In addition, editing of shore- and coastlines, special features such as airports, and implausible terrain structures has also been applied.  The WorldDEM product is based on the radar satellite data acquired during the TanDEM-X Mission, which is funded by a Public Private Partnership between the German State, represented by the German Aerospace Centre (DLR) and Airbus Defence and Space. OpenTopography is providing access to the global 90m (GLO-90) DSM through the public AWS S3 bucket established by Sinergise.     Note:   In the original datasets, the longitudinal spacing of cells increases as a function of latitude for latitudes north of 50N and south of 50S.  See the original documentation  for details.  In order to keep the pixel dimensions uniform, OpenTopography interpolates data north of 50 degrees latitude and south of -50 degrees latitude in order to output a consistent 90m product. GLO-90 is available on a free basis for the general public under the terms and conditions of the License found here 

Organization: OpenTopography
NASADEM Global Digital Elevation Model

NASADEM is a modernization of the Digital Elevation Model (DEM) and associated products generated from the Shuttle Radar Topography Mission (SRTM) data. Interferometric SAR data from SRTM were reprocessed with an optimized hybrid processing technique in producing the data products. The data rely on multiple radar images to create interferograms with 2-dimensional phase arrays that result in greater elevation accuracy. Because of inherent characteristics of interferometric data, it needs to be wrapped and unwrapped so the data are quantifiable. NASADEM relied on the latest unwrapping techniques and auxiliary data that were not available during the original processing of SRTM data. The optimized technique minimized data voids and extended spatial coverage of the SRTM. Additional voids were filled with a variety of sources including ASTER GDEM, Advanced Land Observing Satellite (ALOS) Panchromatic Remote sensing Instrument for Stereo Mapping (PRISM), USGS National Elevation Dataset (NED), and Canada and Alaska DEMs Global DEM Specifications. Vertical and tilt adjustments were applied based on ground control points and laser profiles from the Ice, Cloud and Land Elevation Satellite (ICESat) mission. This application improved the vertical accuracy, swath consistency, and uniformity within the swath mosaic.  The NASADEM products are freely available through the Land Processes Distributed Active Archive Center (LP DAAC) at one arcsecond spacing.  For more information about this dataset, visit the Land Processes Distributed Active Archive Center (LP DAAC)

Organization: OpenTopography
AIS Ship Traffic: Mariana and Wake: 2011-2012

Ship position data from a satellite-based Automatic Identification System (AIS) were obtained jointly by PacIOOS (J. Potemra), SOEST/ORE of the University of Hawaii (E. Roth), and the Papahanaumokuakea Marine National Monument (PNMN) (D. Graham) through a one-time purchase from ORBCOMM LLC. The purchase agreement was made in late 2012 and was for a 30-by-30 degree section of historical AIS data that included the region of the Mariana Islands. The data include AIS long and unchecked reports for a one year period: August 2011 through mid-August 2012. The raw, monthly GPS files were locally converted to NetCDF for the PacIOOS data servers. Due to vendor constraints, release of the raw data is limited.

Tags: commonwealth of the northern mariana islands (cnmi), earth observation satellites, earth remote sensing instruments, earth science, guam, human dimensions, infrastructure, latitude, longitude, micronesia, navigation platforms, northern mariana islands, ocean, pacific islands ocean observing system, pacific ocean, pacioos, passive remote sensing, platform_course, platform_speed_wrt_ground, positioning/navigation, time, transportation, western pacific ocean
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
ETOPO5 Global Surface Relief

ETOPO5 is a 5 arc-minute global relief model of Earth's surface that integrates land topography and ocean bathymetry. It was built from numerous global and regional data sets. This historical dataset has been deprecated in favor of the newer and higher-resolution ETOPO1 1 arc-minute global relief model.

Tags: bathymetry, bathymetry/seafloor topography, dem, digital elevation model, digital elevation/terrain model (dem), earth science, geographic region, global, height, land surface, latitude, longitude, models/analyses, not applicable, oceans, pacific islands ocean observing system, pacioos, terrain elevation, topography
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AIS Ship Traffic: Rose Atoll: 2011-2012

Ship position data from a satellite-based Automatic Identification System (AIS) were obtained jointly by PacIOOS (J. Potemra), SOEST/ORE of the University of Hawaii (E. Roth), and the Papahanaumokuakea Marine National Monument (PNMN) (D. Graham) through a one-time purchase from ORBCOMM LLC. The purchase agreement was made in late 2012 and was for a 30-by-30 degree section of historical AIS data that included the region surrounding Rose Atoll in American Samoa. The data include AIS long and unchecked reports for a one year period: August 2011 through mid-August 2012. The raw, monthly GPS files were locally converted to NetCDF for the PacIOOS data servers. Due to vendor constraints, release of the raw data is limited.

Tags: american samoa, earth observation satellites, earth remote sensing instruments, earth science, human dimensions, infrastructure, latitude, longitude, navigation platforms, ocean, pacific islands ocean observing system, pacific ocean, pacioos, passive remote sensing, platform_course, platform_speed_wrt_ground, polynesia, positioning/navigation, rose atoll, south pacific ocean, time, transportation
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AIS Ship Traffic: Hawaii: 2011-2012

Ship position data from a satellite-based Automatic Identification System (AIS) were obtained jointly by PacIOOS (J. Potemra), SOEST/ORE of the University of Hawaii (E. Roth), and the Papahanaumokuakea Marine National Monument (PNMN) (D. Graham) through a one-time purchase from ORBCOMM LLC. The purchase agreement was made in late 2012 and was for a 30-by-30 degree section of historical AIS data that included the region of the Hawaiian Islands. The data include AIS long and unchecked reports for a one year period: August 2011 through mid-August 2012. The raw, monthly GPS files were locally converted to NetCDF for the PacIOOS data servers. Due to vendor constraints, release of the raw data is limited.

Tags: central pacific ocean, continent, earth observation satellites, earth remote sensing instruments, earth science, hawaii, hawaiian islands, human dimensions, infrastructure, latitude, longitude, navigation platforms, north america, ocean, pacific islands ocean observing system, pacific ocean, pacioos, passive remote sensing, platform_course, platform_speed_wrt_ground, positioning/navigation, time, transportation, united states of america
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
AIS Ship Traffic: Johnston Atoll: 2011-2012

Ship position data from a satellite-based Automatic Identification System (AIS) were obtained jointly by PacIOOS (J. Potemra), SOEST/ORE of the University of Hawaii (E. Roth), and the Papahanaumokuakea Marine National Monument (PNMN) (D. Graham) through a one-time purchase from ORBCOMM LLC. The purchase agreement was made in late 2012 and was for a 30-by-30 degree section of historical AIS data that included the region surrounding Johnston Atoll. The data include AIS long and unchecked reports for a one year period: August 2011 through mid-August 2012. The raw, monthly GPS files were locally converted to NetCDF for the PacIOOS data servers. Due to vendor constraints, release of the raw data is limited.

Tags: central pacific ocean, earth observation satellites, earth remote sensing instruments, earth science, human dimensions, infrastructure, johnston atoll, latitude, longitude, navigation platforms, ocean, pacific islands ocean observing system, pacific ocean, pacioos, passive remote sensing, platform_course, platform_speed_wrt_ground, positioning/navigation, time, transportation, u.s. minor outlying islands (usmoi)
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Nationwide Commercial Laboratory Seroprevalence Survey

CDC is working with commercial laboratories to conduct large-scale geographic seroprevalence surveys to estimate the percentage of people who were previously infected with SARS-CoV-2, the virus that causes COVID-19 disease. The strategy involves working with state, local, territorial, academic, and commercial partners to better understand COVID-19 in the United States using serology (antibody) testing for surveillance (“seroprevalence surveys” or “serosurveys”). For the surveys, de-identified clinical blood samples are tested for antibodies to SARS-CoV-2.

This dataset contains the data used to by the Nationwide Commercial Laboratory Seroprevalence Survey interactive visualization available at <a href="https://covid.cdc.gov/covid-data-tracker/#national-lab">https://covid.cdc.gov/covid-data-tracker/#national-lab</a>.

Additional information is available at <a href="https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/commercial-lab-surveys.html">https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/commercial-lab-surveys.html</a>.

Tags: coronavirus, covid, covid-19, covid19, laboratory, prevalence, seroprevalence, serosurveys
Organization: U.S. Department of Health & Human Services
VETS-100

This dataset contains required veteran employment data by federal contractors/subcontractors. There are two tables V100DataDotGov and V100ADataDotGov. Both collections contain the past two years plus current filing cycle. V100DataDotGov are reports entered for contracts that were established prior to December 1, 2003 and greater than $25,000.00. For additional information on data being reported review information at http://www.dol.gov/vets/vets-100.html#add.

Tags: veterans, vets
Organization: Department of Labor
Data supporting the article titled: Effects of future hydroclimatic conditions on microbial water quality and management practices in two agricultural watersheds.

File (spreadsheet) contains a summary of data presented in the journal article titled "Effects of future hydroclimatic conditions on microbial water quality and management practices in two agricultural watersheds". 

This dataset is associated with the following publication:
Coffey, R.P., J. Butcher, B. Benham, and T. Johnson. Modeling the Effects of Future Hydroclimatic Conditions on Microbial Water Quality and Management Practices in Two Agricultural Watersheds.   Transactions of the ASABE. AMERICAN SOCIETY OF AGRICULTURAL AND BIOLOGICAL ENGINEERS, ST. JOSEPH, MI, USA, 63(3): 753-770, (2020).

Tags: hydroclimatic-conditions, management-responses, microbial-water-quality, modeling, watersheds
Organization: U.S. Environmental Protection Agency
Modeling the Photoinactivation and Transport of Somatic and F+ Coliphages at a Great Lakes Beach

Data include: UV-visible absorption and currents data (ADCP) for swimming waters and a contaminated tributary of Washington Park beach, Michigan City IN obtained  during summer, 2015 . Data include a map of the  locations where samples were collected and ADCP data were collected. 

This dataset is associated with the following publication:
Safaie, A., C. Weiskerger, T. Nguyen, B. Acrey, R. Zepp, M. Molina, M. Cyterski, G. Whelan, Y. Pachepsky, and M. Phanikumar. Modeling the photoinactivation and transport of somatic and f+ coliphages at a great lakes beach.   JOURNAL OF ENVIRONMENTAL QUALITY. American Society of Agronomy, MADISON, WI, USA, 49(6): 1612-1623, (2020).

Tags: bacteriophage, beaches, e-coli, modeling, photoinactivation, public-health
Organization: U.S. Environmental Protection Agency