AndreaBozzo/ceres-open-data-index huggingface dataset:
Demographics API - By Geography Type and Geography Name

This API returns a search for the demographic information for a particular geography type and geography name.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Demographics API - By Geography Type and Geography ID

This API returns a search for the demographic information for a particular geography type and geography ID

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Community Anchor Institutions API - Nation

This API returns the broadband availability among the Community Anchor Institutions for the entire United States.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Community Anchor Institutions API - By Geography Type and Geography Name

This API returns the broadband availability among the Community Anchor Institutions by geography name and type.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Community Anchor Institutions API - By Geography Type and Geography ID

This API returns the broadband availability among the Community Anchor Institutions by geography type and ID.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Census API - By Geography Name

This API returns the geographies specified by a geography name (e.g., Washington) of a specific geography type (e.g., congressional district) within the entire United States.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Census API - By Coordinates

This API returns the US Census Block geography ID information given a passed Latitude and Longitude.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
BTOP Map

The BTOP Map allows the public to visualize the impact of more than $4 billion in broadband investments being made through the American Recovery and Reinvestment Act (Recovery Act). Organizations awarded grants through the Broadband Technology Opportunities Program (BTOP) submit performance reports that summarize their project's progress in advancing broadband access and adoption across the country. These reports can be found on the BTOP website. Drawing on these reports, the BTOP Map allows users to find new infrastructure investments and community institutions connected in their region, locate new and improved public computer centers, and see where efforts to stimulate demand and usage of broadband services (e.g., digital literacy training or free laptop programs) are taking place. Filters enable users to view data by project type, and zooming features help users obtain details on projects in their communities.

Tags: arra, broadband, btop, map
Organization: Department of Commerce
Almanac API - Ranking by Geography Type within the Nation

This API is designed to find the rankings by any geography type within the nation with a specific census metric (population or household) and ranking metric (any of the metrics from provider, demographic, technology or speed). Support for full list of rankings by nation is not allowed for geography types (e.g., county, census place, usf) so only the top ten and bottom ten rankings would be returned through the API.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Almanac API - Ranking by Geography Type within a State

This API is designed to find the rankings by any geography type within the state with a specific census metric (population or household) and ranking metric (any of the metrics from provider, demographic, technology or speed). Only the top ten and bottom ten rankings would be returned through the API if the result set is greater than 500; otherwise full ranking list be returned.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Almanac API - Ranking by Geography ID within the Nation

This API is designed to find the rankings by any geography ID within the nation with a specific census metric (population or household) and ranking metric (any of the metrics from provider, demographic, technology or speed). The results are the top ten and bottom ten rankings within the nation for the particular geography type and my area rankings include +/- 5 rankings from the my area rank.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Almanac API - Ranking by Geography ID within a State

This API is designed to find the rankings by geography within the state for a specific metric (population or household) and rank (any of the metrics from provider, demographic, technology or speed). The results are the top ten and bottom ten records within the state for the particular geography type and my area rankings. Additionally we include +/- 5 rankings from the 'my' area rank.

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, gov20, national-broadband-map, nsgic, ntia, opengov, state-broadband-data-and-development-grant-program, state-broadband-initiative
Organization: Department of Commerce
Almanac API - Parameters

Almanac API - Ranking by Geography ID within the Nation

Tags: arra, broadband, broadband-data-improvement-act, community-anchor-institutions, fcc, federal-communications-commission, gov20, national-broadband-map, national-telecomunications-and-information-administration, nsgic, ntia, opengov, sbdd, state-broadband-data-and-development-program, state-broadband-initiative
Organization: Department of Commerce
RICEWQ_AnnAGNPS_Manuscript_Data

RICEWQ_AnnAGNPS_Manuscript_Data. 

This dataset is associated with the following publication:
Wang, R., R. Bingner, Y. Yuan, M. Locke, G. Herring, D. Denton, and M. Zhang. Evaluation of thiobencarb runoff from rice farming practices in a California watershed using an integrated RiceWQ-AnnAGNPS system.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 767: 144898, (2021).

Tags: annagnps, model-integration, pesticide-modeling, rice-field, ricewq, thiobencarb
Organization: U.S. Environmental Protection Agency
Measuring microRNAs in LCM-isolated nephron segments to determine region-specific expression

To determine nephron specificity of microRNA expression that may be associated as toxicity biomarker seen in the urine, laser-capture microdissection (LCM) was performed on the 4 major segment of the nephron in control rat samples. These samples were sent to Bayer for candidate digital drop PCR measurements, NIEHS for smallRNA-seq measurements, and Abcam for FirePlex measurements. smallRNA-seq  measurements were used as global assessment of miRNA expression in these segments. FirePlex and ddPCR were used as medium to low number candidate assessments, respectively, of miRNA candidates, based on seq and urine data. "Data associated with Fig 4" summarizes the ddPCR findings. "Data Associated with Figure 5" and "Data Associated with Figure 6" summarize the smallRNA-seq findings. "Data Associated with Figure 7" summarize the FirePlex findings. "Data associated with Figure 8_9" summarize the correlations of these measurements. The cumlmination of these data determine nephron-specific and enriched expression of miRNAs, that are potential candidates of toxicity markers that could leak into the urine upon chemical exposure. 

This dataset is associated with the following publication:
Chorley, B., H. Ellinger-Ziegelbauer, M. Tackett, F. Simutis, A. Harrill, J. McDuffie, E. Atabakhsh, R. Nassirpour, L. Whiteley, J. Léonard, G. Carswell, E. Harpur, C. Chen, and J. Gautier. Urinary miRNA Biomarkers of Drug-Induced Kidney Injury and Their Site Specificity Within the Nephron.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,  180(1): 1-16, (2021).

Tags: biomarkers, ddpcr, fireplex, kidney-injury, lcm, micrornas, rna-seq, safety-assessment
Organization: U.S. Environmental Protection Agency
Urinary miRNAs measured in rat studies associated with nephron-specific chemical toxicity

Urine samples were derived from a variety of archived industry-led studies, outlined in the dataset. The purpose was to measure a targeted set of miRNA targets that were represented in the Thermo Fisher TLDA A and TLDA B card sets in Figure 2. These case studies were selected due to probable nephrotoxicity, associated with published or internal records. These clinical markers and histopath evidence was included in Table 1 associated dataset. Given specific nephron toxicity, this experiment would determine miRNA candidates that may be specific toxicity biomarkers. This analysis set up the Venn Analysis in Figure 3, which specified candidates for nephron-specific analyses. 

This dataset is associated with the following publication:
Chorley, B., H. Ellinger-Ziegelbauer, M. Tackett, F. Simutis, A. Harrill, J. McDuffie, E. Atabakhsh, R. Nassirpour, L. Whiteley, J. Léonard, G. Carswell, E. Harpur, C. Chen, and J. Gautier. Urinary miRNA Biomarkers of Drug-Induced Kidney Injury and Their Site Specificity Within the Nephron.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,  180(1): 1-16, (2021).

Tags: biomarkers, kidney-injury, micrornas, safety-assessment
Organization: U.S. Environmental Protection Agency
sea fog study data

The data includes the input for the WRF-CMAQ coupled model and the model output. This dataset is not publicly accessible because: This study was conduct at the University of Houston. It can be accessed through the following means: Please contact Prof. Yunsoo Choi (ychoi23@central.uh.edu) at the Department of Earth and Atmospheric Sciences, University of Houston to obtain the data. Format: input and output data are in netCDF format. 

This dataset is associated with the following publication:
Jung, J., Y. Choi, D. Wong, D. Nelson, and S. Lee. Journal Of Geophysical Research -Atmospheres, Role of sea fog over the Yellow Sea on air quality with the direct effect of aerosols.   JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES. American Geophysical Union, Washington, DC, USA, 126(5): e2020JD033498, (2021).

Tags: aerosol, air-quality, direct-aerosol-effect, pm25, sea-fog
Organization: U.S. Environmental Protection Agency
PHOSPHORUS INVENTORY FOR THE CONTERMINOUS UNITED STATES (2002-2012), updated legacy V2

This dataset contains estimates of phosphorus inputs and outputs for all HUC-8 subbasins across the contiguous United States for the years 2002, 2007, and 2012 as well as estimates of legacy P surplus.

Tags: agriculture, fertilizer-p, nonpoint-source-pollution, phosphorus, point-source, stream-water-quality
Organization: U.S. Environmental Protection Agency
Monoassociation with bacterial isolates reveals the role of colonization, community complexity and abundance on locomotor behavior in larval zebrafish

Across taxa, animals with depleted intestinal microbiomes show disrupted behavioral phenotypes. Axenic (i.e., microbe-free) mice, zebrafish, and fruit flies exhibit increased locomotor behavior, or hyperactivity. The mechanism through which bacteria interact with host cells to trigger normal neurobehavioral development in larval zebrafish is unknown. Here, we monoassociated zebrafish with either one of six different zebrafish-associated bacteria, mixtures of these host-associates, or with an environmental bacterial isolate. We found that while the axenic cohort was hyperactive, monoassociation with three different host-associated bacterial species, as well as with the mixtures, resulted in control-like locomotor behavior. Monoassociation with one host-associate and the environmental isolate resulted in the hyperactive phenotype characteristic of axenic larvae, while monoassociation with two other host-associated bacteria partially blocked this phenotype. Furthermore, we found an intriguing inverse relationship between the total concentration of bacteria per larvae and locomotor behavior. These data support a growing body of evidence that individual species of bacteria can have different effects on host behavior, potentially related to their success at intestinal colonization. Specific to the zebrafish model, our results suggest that differences in the composition of microbes in fish facilities could have profound effects on the outcomes of behavioral and pharmacological studies. 

This dataset is associated with the following publication:
Weitekamp, C., A. Kvasnicka, S. Keely, N. Brinkman, X. Howey, S. Gaballah, D. Phelps, T. Catron, T. Zurlinden, E. Wheaton, and T. Tal. Monoassociation with bacterial isolates reveals the role of colonization, community complexity and abundance on locomotor behavior in larval zebrafish.   Animal Microbiome. BioMed Central Ltd, London,  UK, 3(12): 1-13, (2021).

Tags: germ-free, hyperactivity, locomotor-behavior, microbiome, zebrafish
Organization: U.S. Environmental Protection Agency
Fates of Nanoparticles in Simulated Gastric Fluid Studied using Single-Particle-Inductively Coupled Plasma-Mass Spectrometry

This study adds to the growing knowledge of the fates of ENPs under conditions that simulate the human stomach. The fates of different nanoparticles after exposure to a simulated human digestion system is highly relevant to understand the impact of ENPs overall as they become more integrated into daily life, potentially resulting in increased exposures. Various factors such as species, size, the concentration of ingested ENPs, and body temperature on the fates of nanoparticles in the human digestion system proved to be varied and complex. This research highlights the need for a better understanding of nanomaterials' properties in the digestive system under other physiologically relevant conditions. This work contributes to an improved understanding of the fates of ENPs in gastric fluid, which gives insights into the gastrointestinal uptake of these ENPs before they enter into the blood circulation and organ systems. It is especially crucial for nanoparticles not completely solubilized in the digestive system's physiological contact time because these ENPs will enter into the other body systems and potentially circulate through the body as particulates. Using this study framework, sequentially studying in other tissues, especially for those ENPs not dissolved in SGF, including Ag-NPs, Au-NPs, and CeO¬2–NPs, would be valuable to evaluate the potential risk of ENPs to human health. This dataset is not publicly accessible because: The research continued, additional papers could be published from this data set. It can be accessed through the following means: Data will be placed in EPA file server. Format: Data is on spreadsheet, which includes dissolution rate of engineered nanoparticles of different particle size in simulated gastric fluid. 

This dataset is associated with the following publication:
He, X., H. Zhang, H. Shi, W. Liu, and E. Sahle-Demessie. Fates of Au, Ag, ZnO, and CeO2 Nanoparticles in Simulated Gastric Fluid Studied using Single-Particle-Inductively Coupled Plasma-Mass Spectrometry.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. Elsevier Science Ltd, New York, NY, USA, 31(10): 2180-2190, (2020).

Tags: ingestion-exposure, nanoparticles, simulated-gastric-fluid-sgf, single-particle-sp-icp-ms
Organization: U.S. Environmental Protection Agency
Biochar 4 Crops

Raw data files for study of the effects of biochar on growth and elemental content of four crops: carrot, lettuce, soybean and sweetcorn.  Plus additional files on biochar and soil characteristics. 

This dataset is associated with the following publications:
Olszyk, D., T. Shiroyama, J.M. Novak, K.B. Cantrell, G. Sigua, D.W. Watts, and M. Johnson. Biochar affects growth and shoot nitrogen in four crops for two soils.   Agrosystems, Geosciences & Environment. John Wiley & Sons, Inc., Hoboken, NJ, USA,  e20067, (2020).
Olszyk, D.M., T. Shiroyama, J.M. Novak, K.B. Cantrell, G. Sigua, D.W. Watts, and M.G. Johnson. Biochar Affects Essential Elements of Carrot Taproots and Lettuce Leaves.   HORTSCIENCE. American Society for Horticultural Science,    55(2): 261-271, (2020).

Tags: biochar, carrot, feedstock, lettuce, plant-growth, plant-nutrients, plants, pyrolysis-temperature, remediation, soil, soybean, sweet-corn
Organization: U.S. Environmental Protection Agency
Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries

These are the raw data files for TOXSCI manuscript 19-0578 entitled, “Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries”:
Description from readme.txt file:

1) sc_seahorse.lvl0.merged.data.csv- contains all mapped raw OCR data from tier 1 single-concentration RSA screening of 1,042 Toxcast Phase I and II chemicals

2) mc_seahorse.lvl0.merged.data.csv- contains all mapped raw OCR data from tier 2 multi-concentration RSA screening of 249 actives from tier 1

3) EFA.lvl0.merged.data.csv- contains all mapped raw OCR data from tier 3 EFA screening of 149 putative electron transport chain inhibitors

4) mc5_mc6_ncct_mito_nov2019.csv- level 5 and 6 outputs from ToxCast pipeline (tcpl) analysis

5) RawMC3_ToxCast_by_aeid.csv- level 3 tcpl outputs for all mitochondrial ToxCast assays

6) RawMC5_ToxCast_by_aeid.csv- level 5 tcpl outputs for all mitochondrial ToxCast assays

7) ref.set.chems.csv- sixty reference chemicals used to compared assay performance

8) study_code.R- R script used to analyze data and generate figures and tables. 

This dataset is associated with the following publication:
Hallinger, D., H. Lindsay, K. Friedman, D. Suarez, and S. Simmons. Respirometric Screening and Characterization of Mitochondrial Toxicants Within the ToxCast Phase I and II Chemical Libraries.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,  176(1): 175-192, (2020).

Tags: high-throughput-screening, toxcast
Organization: U.S. Environmental Protection Agency
A cross-platform approach to characterize and screen potential neurovascular unit toxicants

Development of the neurovascular unit (NVU) is a complex, multistage process that requires orchestrated cell signaling mechanisms across several cell types and ultimately results in the formation of the blood-brain barrier. Typical high-throughput screening (HTS) assays investigate single biochemical or single cell responses following chemical insult. As the NVU comprises multiple cell types interacting at various stages of development, a methodology for combining high-throughput results across pertinent cell-based assays is needed to investigate potential chemical-induced disruption to the development of this complex cell system. To this end, we developed a novel method for screening putative NVU disruptors across diverse assay platforms to predict chemical perturbation of the developing NVU. Here, HTS assay results measuring chemical-induced perturbations to cellular key events across angiogenic and neurogenic outcomes were combined to create a cell-based prioritization of NVU hazard. Using activity from each biological outcome, chemicals were grouped into similar modes of action and used to train a logistic regression literature model. This model utilizes the chemical-specific pairwise mutual information score for PubMed MeSH annotations to represent how often a chemical was shown to produce a specific outcome in the published literature space. Taken together, this study presents a methodology to investigate NVU developmental hazard using cell-based HTS assays and literature evidence to prioritize screening of putative NVU disruptors. The results from these screening efforts demonstrate how chemicals that represent a range of putative vascular disrupting compound (pVDC) scores based on angiogenic endpoints can also produce effects on neurogenic outcomes such as neurite outgrowth, neuroprogenitor/neural crest migration, representing an additional method for understanding the range of possible modes of action for disruption of the developing NVU. 

This dataset is associated with the following publication:
Zurlinden, T., K. Saili, N. Baker, T. Toimela, T. Heinonen, and T. Knudsen. A cross-platform approach to characterize and screen potential neurovascular unit toxicants.   REPRODUCTIVE TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 96(September 2020): 300-315, (2020).

Tags: high-throughput-screening, neurovascular-unit, point-wise-mutual-information, tipping-points, vembryo, virtual-embryo, virtual-tissues
Organization: U.S. Environmental Protection Agency
Dataset for Ebullition dominates methane fluxes from the water surface across different ecohydrological patches in a temperate freshwater marsh

Dataset for Ebullition dominates methane fluxes from the water surface across different ecohydrological patches in a temperate freshwater marsh. This dataset is not publicly accessible because: Data is property of Ohio State University. It can be accessed through the following means: Jorge A. Villa, School of Geosciences. University of Louisiana at Lafayette, Lafayette, LA, 70504, USA. Format: Data will be made available at National estuarine research Centralized Data Management Office (http://cdmo.baruch.sc.edu/get/landing.cfm) and the ESS-DiVE  repository. 

This dataset is associated with the following publication:
Villa, J.A., Y. Ju, T. Yazbeck, S. Waldo, K.C. Wrighton, and G. Bohrer. Ebullition dominates methane fluxes from the water surface across different ecohydrological patches in a temperate freshwater marsh at the end of the growing season.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 767: 144498, (2021).

Tags: ebullition, grts, methane, wetland
Organization: U.S. Environmental Protection Agency