AndreaBozzo/ceres-open-data-index huggingface dataset:
Promoting risk reduction among young adults with asthma during wildfire smoke

Poor air quality (AQ) from wildfire smoke is associated with increased asthma attacks and emergency department visits. Young adults are less likely to adhere to AQ alerts than older adults. 
This study utilized data collected as part of a 2020 pilot study testing two smartphone application (app) interventions in young adults with asthma compared to a control group.
NIH R21 1R21NR019071-01 (PI: Postma, Julie M) 4/1/2020-3/31/2022 Promoting Risk
Reduction Among Young Adults with Asthma During Wildre Smoke Events The goal of
this proposal was to assess the feasibility of the `Smoke Sense,' an EPA-developed smart
phone air quality application (app), to positively impact health outcomes among young
adults with asthma. This study is a clinical intervention. This dataset is not publicly accessible because: The data is associated with the manuscript whose corresponding author is Dr. Julie Postma
Assistant Dean of Research, Associate Professor 
Washington State University College of Nursing. It can be accessed through the following means: Assistant Dean of Research, Associate Professor 
Washington State University College of Nursing 
 
Email: jpostma@wsu.edu; Phone: 253-445-4612 
WSU Puyallup Research and Extension Center 2606 W. Pioneer Ave, Puyallup, WA 98371-4998 www.nursing.edu. Format: Ascii flat files. 

This dataset is associated with the following publication:
Postma, J., A. Rappold, T. Odom Maryon, H. Haverkamp, S. Amiri, R. Bindler, J. Whicker, and V. Walden. Promoting risk reduction among young adults with asthma during wildfire smoke.   Public Health Nursing. John Wiley & Sons, Inc., Hoboken, NJ, USA, 39(2): 405-414, (2022).

Tags: asthma, health-risk-communication, smart-phone-applications, wildfire-smoke
Organization: U.S. Environmental Protection Agency
Large-Scale Evaluation of Microorganism Inactivation by Bipolar Ionization and Photocatalytic Devices: Complete Dataset

Complete dataset for manuscript titled: Large-Scale Evaluation of Microorganism Inactivation by Bipolar Ionization and Photocatalytic Devices. 

This dataset is associated with the following publication:
Ratliff, K., L. Oudejans, J. Archer, W. Calfee, J. Gilberry, D.A. Hook, W. Schoppman, R. Yaga, L. Brooks, and S. Ryan. Large-Scale Evaluation of Microorganism Inactivation by Bipolar Ionization and Photocatalytic Devices.   BUILDING AND ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 227(1): 109804, (2023).

Tags: aerosol-treatment, bioaerosol, bipolar-ionization, covid-19, ms2, photocatalytic
Organization: U.S. Environmental Protection Agency
ES60 Water Column Sonar Data Collected During BE201201

A broad-scale, baseline acoustic-trawl surveys of pelagic fishes were conducted in late summer 2012 over the continental shelf of the ice-free U.S. northern Bering and Chukchi Seas on the F/V Bristol Explorer, a 55 m chartered fishing vessel. The goal of this work was to characterize the abundance and distribution of abundant pelagic fishes in the area to better understand the structure and function of these ecosystems. Fish species of interest included commercial subarctic species, which could expand northward in response to warming. The survey was conducted along 0.5 degree spaced transect lines from 59.75N to 73N between 170W and 157W. The primary water column acoustic instrument for the survey was a Simrad ES60 scientific echosounder equipped with a Simrad ES38-10 38 kHz transducer and ES120-7C 120 kHz transducer. The ship departed Dutch Harbor, AK on 01 August 2012, making intermediate port calls to Nome AK before ending in Dutch Harbor, AK on 29 September 2012. The echosounder was calibrated with a 38.1 mm tungsten-carbide sphere via the standard sphere method in Dutch Harbor, AK on 03 August 2012 and again at the end of the survey on 28 September 2012. The results of these surveys and further description of data collection are available in: De Robertis, A., Taylor, K., Wilson, C., and Farley, E. 2017. Abundance and Distribution of Arctic cod (Boreogadus saida) and other Pelagic Fishes over the U.S. Continental Shelf of the Northern Bering and Chukchi Seas Deep-Sea Research II, 135: 51-65.  http://dx.doi.org/10.1016/j.dsr2.2016.03.002

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, chukchi sea, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
ES60 Water Column Sonar Data Collected During BE201301

A broad-scale, baseline acoustic-trawl surveys of pelagic fishes were conducted in late summer 2013 over the continental shelf of the ice-free U.S. northern Bering and Chukchi Seas on the F/V Bristol Explorer, a 55 m chartered fishing vessel. The goal of this work was to characterize the abundance and distribution of abundant pelagic fishes in the area to better understand the structure and function of these ecosystems. Fish species of interest included commercial subarctic species, which could expand northward in response to warming. The survey was conducted along 0.5 degree spaced transect lines from 59.75N to 73N between 170W and 157W. The primary water column acoustic instrument for the survey was a Simrad ES60 scientific echosounder equipped with a Simrad ES38-10 38 kHz transducer and ES120-7C 120 kHz transducer. The ship departed Dutch Harbor, AK on 01 August 2013, making intermediate port calls to Nome AK before ending in Dutch Harbor, AK on 29 September 2013. The echosounder was calibrated with a 38.1 mm tungsten-carbide sphere via the standard sphere method during the survey in the southern Chukchi Sea on 13 August 2013. The results of these surveys and further description of data collection are available in: De Robertis, A., Taylor, K., Wilson, C., and Farley, E. 2017. Abundance and Distribution of Arctic cod (Boreogadus saida) and other Pelagic Fishes over the U.S. Continental Shelf of the Northern Bering and Chukchi Seas Deep-Sea Research II, 135: 51-65.  http://dx.doi.org/10.1016/j.dsr2.2016.03.002

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, chukchi sea, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Linking Snowpack Heterogeneity to Subsurface Storage and Transmissivity, OR 2022

This lidar dataset was collected as part of an NCALM Seed grant for Sarah Newcomb at Idaho State University. This dataset was collected to investigate the link between snowpack heterogeneity and subsurface storage and transmissivity in the rain-snow transition zone. The study area is located east of Eugene, Oregon and covers approximately 63 km2.

Organization: OpenTopography
EM302 Water Column Sonar Data Collected During NA104

Southern California Borderland

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
New England observed and predicted August stream/river temperature maximum daily rate of change points

The shapefile contains points with associated observed and predicted August stream/river temperature maximum negative rate of change in New England based on a spatial statistical network model published in Detenbeck et al. (2016): Detenbeck, N. E., Morrison, A., Abele, R. W. and Kopp, D. (2016), Spatial statistical network models for stream and river temperature in New England, USA. Water Resour. Res. Accepted Author Manuscript. doi:10.1002/2015WR018349). Portions of this dataset are inaccessible because: The dataset is being made available as part of a collection of stream/river temperature model results through EPA's Estuary Data Mapper (publically available application at www.epa.gov/edm for discovering, viewing and accessing geospatial data). They can be accessed through the following means: The dataset is being made available as part of a collection of stream/river temperature model results through EPA's Estuary Data Mapper (publically available application at www.epa.gov/edm for discovering, viewing and accessing geospatial data). Format: Shapefile. 

This dataset is associated with the following publication:
Detenbeck , N., A. Morrison, R. Abele , and D. Kopp. Spatial statistical network models for stream and river temperature in New England, USA.   WATER RESOURCES RESEARCH. American Geophysical Union, Washington, DC, USA, 52: 6018–6040, (2016).

Tags: aquatic-biota, green-infrastrucutre, habitat, new-england, rivers, spatial-statistical-network-model, stormwater, streams, water-temperature
Organization: U.S. Environmental Protection Agency
New England observed and predicted July maximum negative stream/river temperature daily rate of change points

The shapefile contains points with associated observed and predicted July stream/river temperature maximum negative daily rate of change in New England based on a spatial statistical network model published in Detenbeck et al. (2016): Detenbeck, N. E., Morrison, A., Abele, R. W. and Kopp, D. (2016), Spatial statistical network models for stream and river temperature in New England, USA. Water Resour. Res. Accepted Author Manuscript. doi:10.1002/2015WR018349). Portions of this dataset are inaccessible because: The dataset is being made available as part of a collection of stream/river temperature model results through EPA's Estuary Data Mapper (publically available application at www.epa.gov/edm for discovering, viewing and accessing geospatial data). They can be accessed through the following means: The dataset is being made available as part of a collection of stream/river temperature model results through EPA's Estuary Data Mapper (publically available application at www.epa.gov/edm for discovering, viewing and accessing geospatial data). Format: Shapefile. 

This dataset is associated with the following publication:
Detenbeck , N., A. Morrison, R. Abele , and D. Kopp. Spatial statistical network models for stream and river temperature in New England, USA.   WATER RESOURCES RESEARCH. American Geophysical Union, Washington, DC, USA, 52: 6018–6040, (2016).

Tags: aquatic-biota, green-infrastrucutre, habitat, new-england, rivers, spatial-statistical-network-model, stormwater, streams, water-temperature
Organization: U.S. Environmental Protection Agency
New England observed and predicted August stream/river temperature maximum positive daily rate of change points

The shapefile contains points with associated observed and predicted August stream/river temperature maximum positive daily rate of change in New England based on a spatial statistical network model published in Detenbeck et al. (2016): Detenbeck, N. E., Morrison, A., Abele, R. W. and Kopp, D. (2016), Spatial statistical network models for stream and river temperature in New England, USA. Water Resour. Res. Accepted Author Manuscript. doi:10.1002/2015WR018349). Portions of this dataset are inaccessible because: The dataset is being made available as part of a collection of stream/river temperature model results through EPA's Estuary Data Mapper (publically available application at www.epa.gov/edm for discovering, viewing and accessing geospatial data). They can be accessed through the following means: The dataset is being made available as part of a collection of stream/river temperature model results through EPA's Estuary Data Mapper (publically available application at www.epa.gov/edm for discovering, viewing and accessing geospatial data). Format: Shapefile. 

This dataset is associated with the following publication:
Detenbeck , N., A. Morrison, R. Abele , and D. Kopp. Spatial statistical network models for stream and river temperature in New England, USA.   WATER RESOURCES RESEARCH. American Geophysical Union, Washington, DC, USA, 52: 6018–6040, (2016).

Tags: aquatic-biota, green-infrastrucutre, habitat, new-england, rivers, spatial-statistical-network-model, stormwater, streams, water-temperature
Organization: U.S. Environmental Protection Agency
Metadata for ORD-047605

Attached document is metadata for the published manuscript. 

This dataset is associated with the following publication:
Mayer, M.M., N.T. Basta, and K.G. Scheckel. Using phosphate amendments to reduce bioaccessible Pb in contaminated soils: A meta-analysis.   Frontiers in Soil Science. Frontiers, Lausanne,  SWITZERLAND, 2: 1028328, (2022).

Tags: bioaccessibility, lead, phosphorus, remediation
Organization: U.S. Environmental Protection Agency
Metadata for manuscript

The document contains metadata of the information presented in the manuscript. 

This dataset is associated with the following publication:
Lucas, E., L. Mosesso, T. Roswall, Y. Yang, K. Scheckel, A. Shober, and G.S. Toor. X-ray absorption near edge structure spectroscopy reveals phosphate minerals at surface and agronomic sampling depths in agricultural Ultisols saturated with legacy phosphorus.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 308 part 2: 136288, (2022).

Tags: mineralogy, phosphate-removal, synchrotron-speciation, xanes
Organization: U.S. Environmental Protection Agency
Premise Plumbing Water Age Study

Summary of simulated water age results associated with Monte Carlo simulations conducted on 3 real world homes. 

This dataset is associated with the following publication:
Burkhardt, J., J. Minor, W. Platten, F. Shang, and R. Murray. Relative Water Age in Premise Plumbing Systems Using an Agent-Based Modeling Framework.   JOURNAL OF WATER RESOURCES PLANNING AND MANAGEMENT. American Society of Civil Engineers  (ASCE), Reston, VA, USA, 149(4): 04023007, (2023).

Tags: epanet, modeling, premise-plumbing, water-age
Organization: U.S. Environmental Protection Agency
Detroit 2022 Radionuclide transport stormwater data set

PCSWMM input file. This dataset is not publicly accessible because: EPA cannot release CBI, or data protected by copyright, patent, or otherwise subject to trade secret restrictions. Request for access to CBI data may be directed to the dataset owner by an authorized person by contacting the party listed. It can be accessed through the following means: Via non-disclosure agreement with the Great Lakes Water Authority. Format: PSCWMM input file. 

This dataset is associated with the following publication:
Mikelonis, A., J. Shireman, and K. Ratliff. Impact of model structure on radionuclide transport in urban stormwater.   ENVIRONMENTAL MODELLING AND SOFTWARE. Elsevier Science Ltd, New York, NY, USA, 160: 105602, (2023).

Tags: homeland-security, radiological-disperal-device, stormwater
Organization: U.S. Environmental Protection Agency
Characterization data for trout liver S9 fractions used by Droge et al to measure the in vitro intrinsic clearance of cationic surfactants

This ScienceHub dataset provides characterization data for a pooled sample of trout liver S9 fractions that was used to study the in vitro intrinsic clearance of selected cationic surfactants.  These data describe the activity of the pooled sample toward prototypical substrates for cytochrome P450 (CYP) 1A, glutathione-S-transferase, and UDP-glucuronosyltranserase.  Also provided are the protein content and total CYP content of the sample and well as information pertaining to the size and gender of fish from which the original sample was obtained. 

This dataset is associated with the following publication:
Droge, S., J. Armitage, J. Arnot, P. Fitzsimmons, and J. Nichols. Biotransformation Potential of Cationic Surfactants in Fish Assessed with Rainbow Trout Liver S9 Fractions.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 40(11): 3123-3136, (2021).

Tags: bioaccumulation-assessment, biotransformation, cationic-surfactant, liver-s9-fraction, rainbow-trout
Organization: U.S. Environmental Protection Agency
Ozone responsive gene expression as a model for describing repeat exposure response trajectories and inter-individual toxicodynamic variability in vitro

Dataset for manuscript titled, "Ozone responsive gene expression as a model for describing repeat exposure response trajectories and inter-individual toxicodynamic variability in vitro" published in Toxicological Sciences (2022), 185(1): 38-49.  Metadata are in the Readme tab within the data file. 

This dataset is associated with the following publication:
Bowers, E., E. Martin, A. Jarabek, D. Morgan, H. Smith, L. Dailey, E. Aungst, D. Diaz-Sanchez, and S. McCullough. Ozone responsive gene expression as a model for describing repeat exposure response trajectories and interindividual toxicodynamic variability in vitro.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,  185(1): 38-49, (2022).

Tags: acute-inhalation-study, in-vitro, inhalation, nams, ozone, primary-bronchial-epithelial-cell, repeated-exposure
Organization: U.S. Environmental Protection Agency
FluoroMatch 2.0-making automated and comprehensive non-targeted PFAS annotation a reality

Data for "Koelmel JP, Stelben P, McDonough CA, Dukes DA, Aristizabal-Henao JJ, Nason SL, Li Y, Sternberg S, Lin E, Beckmann M, Williams AJ, Draper J, Finch JP, Munk JK, Deigl C, Rennie EE, Bowden JA, Godri Pollitt KJ. FluoroMatch 2.0-making automated and comprehensive non-targeted PFAS annotation a reality. Anal Bioanal Chem. 2022 Jan;414(3):1201-1215. doi: 10.1007/s00216-021-03392-7. Epub 2021 May 20. PMID: 34014358.". Portions of this dataset are inaccessible because: The link provided by UCSD doesn't seem to be working. They can be accessed through the following means: Contact Jeremy Koelmel at Yale University, jeremykoelmel@innovativeomics.com. Format: The final annotated excel sheets with feature intensities, annotations, homologous series groupings, etc., are available as a supplemental excel file with the online version of this manuscript. The raw Agilent “.d” files can be downloaded at: ftp://massive.ucsd.edu/MSV000086811/updates/2021-02-05_jeremykoelmel_e5b21166/raw/McDonough_AFFF_3M_ddMS2_Neg.zip

(Note use Google Chrome or Firefox, Microsoft Edge and certain other browsers are unable to download from an ftp link). 

This dataset is associated with the following publication:
Koelmel, J.P., P. Stelben, C.A. McDonough, D.A. Dukes, J.J. Aristizabal-Henao, S.L. Nason, Y. Li, S. Sternberg, E. Lin, M. Beckmann, A. Williams, J. Draper, J. Finch, J.K. Munk, C. Deigl, E. Rennie, J.A. Bowden, and K.J. Godri Pollitt. FluoroMatch 2.0—making automated and comprehensive non-targeted PFAS annotation a reality.   Analytical and Bioanalytical Chemistry. Springer, New York, NY, USA, 414(3): 1201-1215, (2022).

Tags: aqueous-film-forming-foam, liquid-chromatography, mass-spectrometry, non-targeted-analysis, pfas, software
Organization: U.S. Environmental Protection Agency
Detection and toxicity modeling of anthraquinone dyes and chlorinated side products from a colored smoke pyrotechnic reaction

Data for "Dilger JM, Martin TM, Wilkins BP, Bohrer BC, Thoreson KM, Fedick PW. Detection and toxicity modeling of anthraquinone dyes and chlorinated side products from a colored smoke pyrotechnic reaction. Chemosphere. 2022 Jan;287(Pt 1):131845. doi: 10.1016/j.chemosphere.2021.131845. Epub 2021 Aug 19. PMID: 34523441.". 

This dataset is associated with the following publication:
Dilger, J., T. Martin, B. Wilkins, B. Bohrer, K. Thoreson, and P. Fedick. Detection and toxicity modeling of anthraquinone dyes and chlorinated side products from a colored smoke pyrotechnic reaction.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 287(Part 1): 131845, (2022).

Tags: environmental-chemistry, gas-chromatography, mass-spectrometry, pyrolysis, pyrotechnic-smokes-and-obscurants, toxicity-modeling
Organization: U.S. Environmental Protection Agency
Roof-harvested rainwater pathogen ddPCR data

Bayesian estimations of ddPCR molecules of virulence genes detected per ml of each sample and conversion of molecules to cells/cysts/oocysts per ml based on published estimates of gene copies per cell/cyst/oocyst. 

This dataset is associated with the following publication:
Alja'fari, J., S. Sharvelle, N. Brinkman, M. Jahne, S. Keely, E. Wheaton, J. Garland, C. Welty, M. Sukop, and T. Meixner. Characterization of Roof Runoff Microbial Quality in Four U.S. Cities with Varying Climate and Land Use Characteristics.   WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 225: 119123, (2022).

Tags: nonpotable-reuse, roof-harvested-rainwater, roof-runoff, water-reuse
Organization: U.S. Environmental Protection Agency
Meta-Dataset for property values and water quality

We conduct a comprehensive literature review and meta-analysis of studies that examine the effects of water quality on waterfront and non-waterfront housing values. We identify 36 studies that yield 665 observations. The rows of the dataset include each observation from the hedonic studies and the columns include the variables we created from each study (e.g., year of publication, type of publication, water quality measure, location, waterbody type, elasticities). This dataset is associated with the following publication: Guignet, D., M. Heberling, M. Papenfus, and O. Griot. Property values, water quality, and benefit transfer: A nationwide meta-analysis.. Land Economics. University of Wisconsin Press, Madison, WI, USA, 98(2): 191-218, (2022).

Tags: hedonic, meta-analysis, property-value, water-pollution, water-quality
Organization: U.S. Environmental Protection Agency
PBPK Model Template Extension to VOCs

The data set includes source code that implements a PBPK model template that has been extended with features capable of implementing models for volatile organic compounds (VOCs).  It also includes data from the U.S. EPA IRIS assessments for DCM (2011) and methanol (2013) and data from Sasso et al. (2013), Ramsey and Andersen (1984), and Yoon et al. (2007) used to show the ability of the template to replicate published VOC PBPK models. The extension of the model template is described in a paper that will be submitted to the journal Toxicological Sciences.

Tags: dosimetry, extrapolation, model-template, pbpk, quality-assurance
Organization: U.S. Environmental Protection Agency