AndreaBozzo/ceres-open-data-index huggingface dataset:
Annual PM2.5 and cardiovascular mortality rate data: Trends modified by county socioeconomic status in 2,132 US counties

Data on county socioeconomic status for 2,132 US counties and each county’s average annual cardiovascular mortality rate (CMR) and total PM2.5 concentration for 21 years (1990-2010). County CMR, PM2.5, and socioeconomic data were obtained from the U.S. National Center for Health Statistics, U.S. Environmental Protection Agency’s Community Multiscale Air Quality modeling system, and the U.S. Census, respectively. A socioeconomic index was created using seven county-level measures from the 1990 US census using factor analysis. Quintiles of this index were used to generate categories of county socioeconomic status. 

This dataset is associated with the following publication:
Wyatt, L., G. Peterson, T. Wade, L. Neas, and A. Rappold. The contribution of improved air quality to reduced cardiovascular mortality: Declines in socioeconomic differences over time.   ENVIRONMENT INTERNATIONAL. Elsevier B.V., Amsterdam,  NETHERLANDS, 136: 105430, (2020).

Tags: air-pollution, cardiovascular, mortality, particulate-matter, socioeconomic-status
Organization: U.S. Environmental Protection Agency
Multigene biomarkers of pyrethroid exposure: exploratory experiments

Gene expression microarray measurements in Pimephales promelas before and after pyrethroid exposure. 

This dataset is associated with the following publication:
Kostich, M., D. Bencic, A. Batt, M. See, R. Flick, D. Gordon, J. Lazorchak, and A. Biales. Multigene Biomarkers of Pyrethroid Exposure: Exploratory Experiments.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 38(11): 2436-2466, (2019).

Tags: aquatic, fish, gene-expression, microarray, pyrethroid
Organization: U.S. Environmental Protection Agency
Datasets for figures and tables

Software

Model simulations were conducted using WRF version 3.8.1 (available at https://github.com/NCAR/WRFV3) and CMAQ version 5.2.1 (available at https://github.com/USEPA/CMAQ). The meteorological and concentration fields created using these models are too large to archive on ScienceHub, approximately 1 TB, and are archived on EPA’s high performance computing archival system (ASM) at /asm/MOD3APP/pcc/02.NOAH.v.CLM.v.PX/. 

Figures

Figures 1 – 6 and Figure 8: Created using the NCAR Command Language (NCL) scripts (https://www.ncl.ucar.edu/get_started.shtml). NCLD code can be downloaded from the NCAR website (https://www.ncl.ucar.edu/Download/) at no cost. The data used for these figures are archived on EPA’s ASM system and are available upon request.

Figures 7, 8b-c, 8e-f, 8h-i, and 9 were created using the AMET utility developed by U.S. EPA/ORD. AMET can be freely downloaded and used at https://github.com/USEPA/AMET. The modeled data paired in space and time provided in this archive can be used to recreate these figures. 

The data contained in the compressed zip files are organized in comma delimited files with descriptive headers or space delimited files that match tabular data in the manuscript. The data dictionary provides additional information about the files and their contents. 

This dataset is associated with the following publication:
Campbell, P., J. Bash, and T. Spero. Updates to the Noah Land Surface Model in WRF‐CMAQ to Improve Simulated Meteorology, Air Quality, and Deposition.   Journal of Advances in Modeling Earth Systems. John Wiley & Sons, Inc., Hoboken, NJ, USA, 11(1): 231-256, (2019).

Tags: air-quality, chemistry-meteorology, cmaq, wrf-cmaq
Organization: U.S. Environmental Protection Agency
Dataset of firefighters absorption of PAHs and benzene during training exercises

The dataset contains concentrations of toxicants in breath and urine collected from study participants. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: By contacting CDC/NIOSH. Format: The dataset contains concentrations of toxicants in breath and urine collected from study participants. 

This dataset is associated with the following publication:
Fent, K., C. Toennis, D. Sammons, S. Robertson, S. Bertke, A. Calafat, J. Pleil, A. Wallace, S. Kerber, D. Smith, and G. Horn. Firefighters' and instructors’ absorption of PAHs and benzene during training exercises.   INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH. Elsevier B.V., Amsterdam,  NETHERLANDS, 222(7): 991-1000, (2019).

Tags: benzene, biomarkers, breath, firefighters, polycyclic-aromatic-hydrocarbons, urine
Organization: U.S. Environmental Protection Agency
These data are from a human study collected under IRB protocol:  ClinicalTrials.gov # NCT01874834

These data are from a human study collected under IRB protocol:  ClinicalTrials.gov # NCT01874834. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: These data are from a human study collected under IRB protocol:  ClinicalTrials.gov # NCT01874834.  As such, it is a violation of Federal Law to publish them. Format: These data are from a human study collected under IRB protocol:  ClinicalTrials.gov # NCT01874834. 

This dataset is associated with the following publication:
Stiegel, M., J. Pleil, J. Sobus, T. Stevens, and M. Madden. Linking physiological parameters to perturbations in the human exposome: Environmental exposures modify blood pressure and lung function via inflammatory cytokine pathway.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH - PART A:  CURRENT ISSUES. Taylor & Francis, Inc., Philadelphia, PA, USA, 80(9): 485-501, (2017).

Tags: cytokine, diesel-exhaust, exposure-data, inflammatory-response
Organization: U.S. Environmental Protection Agency
The Effects of Roadside Vegetation Barrier Characteristics on Near-Road Air Quality

Air quality and meteorological measurements collected in Woodside, California along a heavily-trafficked highway with and without an existing vegetation barrier.  The data includes fixed and mobile monitoring data collected by an electric vehicle for CO, NO2, black carbon and ultrafine particles. 

This dataset is associated with the following publication:
Deshmukh, P., V. Isakov, A. Venkatram, B. Yang, K. Zhang, R. Logan, and R. Baldauf. The Effects of Roadside Vegetation Characteristics on Local, Near-Road Air Quality.   Air Quality, Atmosphere & Health. Springer Netherlands,   NETHERLANDS, 12(3): 259-270, (2018).

Tags: air-quality, near-road, traffic, vegetation
Organization: U.S. Environmental Protection Agency
Dataset of the influence of temperature on the emissions of organophosphate flame retardants from polyisocyanurate foam: measurement and modelling.

Dataset of the influence of temperature on the emissions of organophosphate flame retardants from polyisocyanurate foam: measurement and modelling. 

This dataset is associated with the following publication:
Liang, Y., X. Liu, and M. Allen. The Influence of Temperature on the Emissions of Organophosphate Ester Flame Retardants from Polyisocyanurate Foam: Measurement and Modeling.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 233: 347-354, (2019).

Tags: chamber-testing, emission-mechanism, organophosphate-flame-retardants-opfrs, semivolatile-organic-compounds-svocs, temperature-influence
Organization: U.S. Environmental Protection Agency
serrano A-sf8c data

This dataset contains raw and reduced GC and LC data in an excel file. 

This dataset is associated with the following publication:
Serrano, J., R. Kolanczyk, M. Tapper, T. Lahren, N. Dongari, D. Hammermeister, P. Kosian, P. Schmieder, B. Sheedy, K. Challis, and A. Kubatova. Characterization and analysis of estrogenic cyclic phenone metabolites produced in vitro by rainbow trout liver slices using GC-MS, LC-MS and LC-TOF-MS.   Journal of Chromatography B. Elsevier Science Ltd, New York, NY, USA, 1126-1127: 1-12, (2019).

Tags: cyclic-phenones, fish, metabolism, vtg-gene-expression
Organization: U.S. Environmental Protection Agency
Model output and data used for analysis

The modeled data in these archives are in the NetCDF format (https://www.unidata.ucar.edu/software/netcdf/). NetCDF (Network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. It is also a community standard for sharing scientific data. The Unidata Program Center supports and maintains netCDF programming interfaces for C, C++, Java, and Fortran. Programming interfaces are also available for Python, IDL, MATLAB, R, Ruby, and Perl.
Data in netCDF format is:
•	Self-Describing. A netCDF file includes information about the data it contains.
•	Portable. A netCDF file can be accessed by computers with different ways of storing integers, characters, and floating-point numbers.
•	Scalable. Small subsets of large datasets in various formats may be accessed efficiently through netCDF interfaces, even from remote servers.
•	Appendable. Data may be appended to a properly structured netCDF file without copying the dataset or redefining its structure.
•	Sharable. One writer and multiple readers may simultaneously access the same netCDF file.
•	Archivable. Access to all earlier forms of netCDF data will be supported by current and future versions of the software.
Pub_figures.tar.zip 
Contains the NCL scripts for figures 1-5 and Chesapeake Bay Airshed shapefile. The directory structure of the archive is ./Pub_figures/Fig#_data. Where # is the figure number from 1-5. 
EMISS.data.tar.zip 
This archive contains two NetCDF files that contain the emission totals for 2011ec and 2040ei emission inventories. The name of the files contain the year of the inventory and the file header contains a description of each variable and the variable units. 
EPIC.data.tar.zip contains the monthly mean EPIC data in NetCDF format for ammonium fertilizer application (files with ANH3 in the name) and soil ammonium concentration (files with NH3 in the name) for historical (Hist directory) and future (RCP-4.5 directory) simulations.
WRF.data.tar.zip contains mean monthly and seasonal data from the 36km downscaled WRF simulations in the NetCDF format for the historical (Hist directory) and future (RCP-4.5 directory) simulations. 
CMAQ.data.tar.zip contains the mean monthly and seasonal data in NetCDF format from the 36km CMAQ simulations for the historical (Hist directory), future (RCP-4.5 directory) and future with historical emissions (RCP-4.5-hist-emiss directory). 

This dataset is associated with the following publication:
Campbell, P., J. Bash, C. Nolte, T. Spero, E. Cooter, K. Hinson, and L. Linker. Projections of Atmospheric Nitrogen Deposition to the Chesapeake Bay Watershed.   Journal of Geophysical Research - Biogeosciences. American Geophysical Union, Washington, DC, USA, 12(11): 3307-3326, (2019).

Tags: chesapeake-bay, cmaq, nitrogen-and-co-pollutants, tmdl
Organization: U.S. Environmental Protection Agency
Mutagenicity Emission Factors of canola Oil and Waste Vegetable Oil Biodiesel:  Comparison to Soy Biodiesel

The data set show the number of bacterial mutant colonies (called revertants or rev) per petri plate and the dose of the extractable organic matter (EOM) in terms of micrograms/petri plate for the extracts of the various biodiesel samples evaluated. 

This dataset is associated with the following publication:
Demarini, D., E. Mutlu, S. Warren, C. King, M. Gilmour, and W. Linak. Mutagenicity Emission Factors of Canola Oil and Waste Vegetable Oil Biodiesel:  Comparison to Soy Biodiesel.   Mutation Research / Genetic Toxicology and Environmental Mutagenesis. Elsevier Science Ltd, New York, NY, USA, 846: 1-8, (2019).

Tags: biodiesel, canola-oil, emission-factors, mutagenicity, waste-vegetable-oil
Organization: U.S. Environmental Protection Agency
Data set for Vassallo et al

The dataset contains data from MEA recordings for 6 different compounds that were tested in a concentration-response format. Multiple parameters of neural network function were evaluated. 

This dataset is associated with the following publication:
Shafer , T., C. Mack , A. Johnstone , A. Vassallo, M. Chiappalone, R. De Camargo Lopes, B. Scelfo, A. Novellino, E. Defranchi, T. Palosaari, T. Weisschu, T. Ramirez, R. Landsiedel, S. Martinoia, M. Whealan, and A. Bal-Price. A multi-laboratory evaluation of microelectrode array-based measurements of neural network activity for acute neurotoxicity testing..   NEUROTOXICOLOGY. Elsevier B.V., Amsterdam,  NETHERLANDS, 60: 280-292, (2017).

Tags: cross-laboratory-comparison, microelectrode-array, screening
Organization: U.S. Environmental Protection Agency
Provides an overview of the analysis and associated files, scripts and datasets

This dataset contains the files, scripts and data that were used to run the simulations and data analyses for the manuscript. 

This dataset is associated with the following publication:
Ball, K., C. Grant, W. Mundy, and T. Shafer. A multivariate extension of mutual information for growing neural networks..   Neural Networks. Elsevier B.V., Amsterdam,  NETHERLANDS, 95: 29-43, (2017).

Tags: developmental-neurotoxicity, microelectrode-array, neurotoxicity, screening
Organization: U.S. Environmental Protection Agency
Automated Retrieval and Evaluation of Precipitation Data Sources for Environmental Modeling

36 years of daily precipitation data from NLDAS, GLDAS, PRISM, NCEI, and DAYMET. 

This dataset is associated with the following publication:
Sitterson, J., S. Sinnathamby, R. Parmar, J. Koblich, K. Wolfe, and C. Knightes. Demonstration of an online web services tool incorporating automatic retrieval and comparison of precipitation data.   ENVIRONMENTAL MODELLING & SOFTWARE. Elsevier Science, New York, NY,   123: 104570, (2020).

Tags: comparison, pre-processing-data, precipitation, precipitation-data, web-services
Organization: U.S. Environmental Protection Agency
ISO-Aging Data

GC-MS chromatograms from chamber and field studies were generated in this study. 

This dataset is associated with the following publication:
Jaoui, M., R. Szmigielski, K. Nestorowicz, A. Kolodziejczyk, K. Sarang, K.J. Rudzinski, A. Konopka, T. Kleindienst, E. Bulska, and M. Lewandowski. Organic Hydroxy Acids as Highly Oxygenated Molecular (HOM) Tracers for Aged Isoprene Aerosol.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 53(24): 14516-14527, (2019).

Tags: highly-oxidized-molecules, isoprene, lc-orbitrap, mass-spectrometry, methyl-threonic-acid, methylerythronic-acid, methyltartaric-acid, secondary-organic-aerosol
Organization: U.S. Environmental Protection Agency
Lakes, Surface Water Dynamics, Prairie Pothole Region, Depressional wetlands, Wetland Loss, Landsat, Climate, Wetland Connectivity

These data are processed Landsat images. This dataset is not publicly accessible because: The dataset is too large for Sciencehub upload. It can be accessed through the following means: Please contact Laurie Alexander, alexander.laurie@epa.gov. Format: These data are in OLI Full Resolution Browse (FRB) format. 

This dataset is associated with the following publication:
Vanderhoof , M., and L. Alexander. The Role of Lake Expansion in Altering the Wetland Landscape of the Prairie Pothole Region, United States.   WETLANDS. The Society of Wetland Scientists, McLean, VA, USA, 36(Suppl 2): S309-S321, (2016).

Tags: climate, depressional-wetlands, lakes, landsat, prairie-pothole-region, surface-water-dynamics, wetland-connectivity, wetland-loss
Organization: U.S. Environmental Protection Agency
metadata_A-280m

The metadata describe the set of Landsat Thematic Mapper images used in this study. This dataset is not publicly accessible because: File size is too large. It can be accessed through the following means: See the data dictionary. Format: TIFF. 

This dataset is associated with the following publication:
Vanderhoof, M., J. Christensen , and L. Alexander. Patterns and drivers for wetland connections in the Prairie Pothole Region, United States.   Wetlands Ecology and Management. Springer Science and Business Media B.V;Formerly Kluwer Academic Publishers B.V.,   GERMANY, 25: 275-297, (2017).

Tags: landsat, network, prairie-pothole-region, wetlands
Organization: U.S. Environmental Protection Agency
SciHub Disinfectant Impact

Contains Sample ID, Disinfectant type, Cold/Hot, Total Chlorine Residual, Genomic Target/L. 

This dataset is associated with the following publication:
Donohue, M., S. Vesper, J. Mistry, and J. Donohue. Impact of Chlorine and Chloramine on the Detection and Quantification of Legionella pneumophila and Mycobacterium Species.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, USA, 85(24): e01942-19, (2019).

Tags: disinfectant, legionella, mycobacterium, total-chlorine-residual
Organization: U.S. Environmental Protection Agency
US EPA Superfund Site Soil Samples

US EPA Superfund site soil samples. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: In the publication and supporting information. Format: These data were generated from US EPA Superfund site soil samples. 

This dataset is associated with the following publication:
Bradham, K., C. Nelson, P. Alava, J. Misenheimer, G. Diamond, W. Thayer, and D. Thomas. Estimating relative bioavailability of soil lead in the mouse.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH - PART A:  CURRENT ISSUES. Taylor & Francis, Inc., Philadelphia, PA, USA, 79(24): 1179-1182, (2016).

Tags: bioavailability, lead, soil
Organization: U.S. Environmental Protection Agency
Biophysical comparision  of four silver nanoparticles coatings using microscopy hyperspectral imaging and flow cytometry

hyperspectral imaging data, images , flow cytometry histograms. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: contact robert zucker by e-mail
zucker.robert@epa.gov. Format: the imaging is in JP2 and ND 2 nikon files . the flow cytometry is in FSC3.0 format which is not uploadable. 

This dataset is associated with the following publication:
Zucker, R., J. Ortenzio, L. Degn, J. Lerner , and W. Boyes. Biophysical Comparison of Four Silver Nanoparticles Coatings using Microscopy, Hyperspectral Imaging and Flow Cytometry..   PLoS ONE. Public Library of Science, San Francisco, CA, USA,  1-24, (2019).

Tags: cell-cycle, darkfield-microscopy, flow-cytometry, hyperspectral-imaging, light-scatter, microscopy, mitochondria, plasmonic-surface-resonance, silver-nanoparticles
Organization: U.S. Environmental Protection Agency
Riparian Wetness in the Upper Missouri Headwater basins - supporting data

Includes data and derivations not publicly available used to create figures and tables for manuscript. 

This dataset is associated with the following publication:
Vanderhoof, M., J. Christensen, and L. Alexander. Influence of multi-decadal land use, irrigation practices and climate on riparian corridors across the Upper Missouri River headwaters basin, Montana.   HYDROLOGY AND EARTH SYSTEM SCIENCES. EGS,    23(10): 4269–4292, (2019).

Tags: center-pivot, discharge, landsat, riparian-wetness
Organization: U.S. Environmental Protection Agency
Dataset - Donner Nanosilver PCP Table 3 LCF results

Linear combination fitting results of the Ag K-edge XANES spectra using the standards listed, as percentage composition and variability (in parentheses) of the total. R-factor indicates the quality of the fit. 

This dataset is associated with the following publication:
Khaksar, M., S. Vasileiadis, R. Sekine, G. Brunetti, K.G. Scheckel, K. Vasilev, E. Lombi, and E. Donner. Chemical characterisation, antibacterial activity, and (nano)silver transformation of commercial personal care products exposed to household
greywater.   Environmental Science: Nano. RSC Publishing, Cambridge,  UK, 6(10): 3027-3028, (2019).

Tags: antimicrobial-activity, silver-nanoparticles, synchrotron-speciation
Organization: U.S. Environmental Protection Agency
Reactivity of graphene oxide with reactive oxygen species

Graphs of kinetic data on indirect photoreaction of graphene oxide with selected reactive oxygen species graphs. 

This dataset is associated with the following publication:
Hsieh, H., and R. Zepp. Reactivity of graphene oxide with reactive oxygen species (hydroxyl radical, singlet oxygen, and superoxide anion).   Environmental Science: Nano. RSC Publishing, Cambridge,  UK, 6(12): 3734-3744, (2019).

Tags: aquatic-environment, carbon-nanomaterial, graphene-oxide, indirect-photolysis, reactive-oxygen-species, transformations
Organization: U.S. Environmental Protection Agency
Regulating temperature and relative humidity in air-liquid interface in vitro systems

The raw data values used in all the tables and figures of the manuscript. 

This dataset is associated with the following publication:
Zavala, J., R. Greenan, T. Krantz , D. DeMarini , M. Higuchi , I. Gilmour , and P.A. White. Regulating temperature and relative humidity in air-liquid interface in vitro systems eliminates cytotoxicity resulting from control air exposures.   Toxicology Research. Royal Society of Chemistry, London,  UK, 6(4): 448-459, (2017).

Tags: air-liquid, complex-aerosols, exposures, in-vitro, relative-humidity, temperature
Organization: U.S. Environmental Protection Agency