AndreaBozzo/ceres-open-data-index huggingface dataset:
NOAA/WDS Paleoclimatology - Lynch's Crater 45,000 Year Optical Absorption Data

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Lake. The data include parameters of paleolimnology with a geographic location of Queensland, Australia. The time period coverage is from 45000 to 0 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: australia, australia/new zealand, climate indicators, continent, doc/noaa/nesdis/ncei, earth science, hydrology, latitude -17.3667, longitude 145.7, lynch's crater, material: null, material: peat, national centers for environmental information, nesdis, noaa, ocean/lake records, paleoclimate, paleoclimate indicators, paleolimnology, physical properties, queensland, u.s. department of commerce, what: absorbance, what: depth
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - Morino fire data from Rock House Spring - IMPD USRKH001

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Fire. The data include parameters of fire history|tree ring with a geographic location of New Mexico, United States Of America. The time period coverage is from 501 to -43 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: climate indicators, coni, continent, doc/noaa/nesdis/ncei, earth science, fire history, fire history|tree ring, fire scar dates, land records, latitude 32.334, longitude -106.54763, material: null, material: wood, national centers for environmental information, nesdis, new mexico, noaa, north america, paleoclimate, paleoclimate indicators, rock house spring, u.s. department of commerce, united states of america, various conifers, what: age, what: tree demographic and injury and fire event code
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - Istorvet Ice Cap, East Greenland Late Holocene Radiocarbon Ages

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Other Collections. The data include parameters of others with a geographic location of Greenland. The time period coverage is from 1590 to 115 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: climate indicators, continent, doc/noaa/nesdis/ncei, earth science, greenland, istorvet ice cap, latitude 70.93, longitude -22.15, national centers for environmental information, nesdis, noaa, north america, others, paleoclimate, paleoclimate indicators, paleoclimate reconstructions, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - GISP2-GICC05 Chronology Conversion Software

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Other Collections. The data include parameters of others with a geographic location of Global. The time period coverage is from 103740 to 8240 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: climate indicators, doc/noaa/nesdis/ncei, earth science, geographic region, global, latitude, longitude, national centers for environmental information, nesdis, noaa, others, paleoclimate, paleoclimate indicators, paleoclimate reconstructions, u.s. department of commerce
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EM304 Water Column Sonar Data Collected During EX2308

From October 21 â November 10, 2023 (San Francisco, California to San Francisco, California) NOAA Ocean Exploration conducted EXPRESS: Exploration of Central California Coast (EX2308), an AUV and mapping expedition, along the central Californian coast. Operations during this 21-day expedition included the completion of 5 successful autonomous underwater vehicle (AUV) dives with the University of Southern Mississippiâs (an OECI affiliate) AUVs Eagle Ray and Mola Mola, conducted in water depths ranging from ~400 m to 1954 m for approximately 66 hours and 55 minutes of dive time. EX2308 also collected 22,259 sq. km of seafloor bathymetry and associated water column data using the EM304 multibeam sonar, all within the US EEZ. All data associated with this expedition will be archived within 120 days of the end of the expedition and will be publically available through NOAA Archives.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EK60 Water Column Sonar Data Collected During EX2309

From November 30 - December 8, 2023 (San Francisco, California to San Francisco, California) NOAA Ocean Exploration conducted EXPRESS: West Coast Exploration (EX2309), an AUV and mapping expedition, along the central Californian coast. Operations during this 9-day expedition included mapping operations and drop camera operations in the Channel Islands National Marine Sancutary and along the Central California coast. Unfortunately due to weather and logitics onboard the ship, only one AUV dive was conducted. This dive was located in CINMS and coresponds to a calibration that was needed to complete the dataset for EX2308 in collaboration with the University of Southern Mississippi's (an OECI affiliate) AUVs Eagle Ray. Five drop camera deployments were conducted in partnership with Ocean Discovery League as part of the development of their new lightweight, low cost camera system, Maka Nui. EX2309 also collected 6,375 square kilometers of seafloor bathymetry and associated water column data using the EM304 multibeam sonar, all within the US EEZ. Data associated with this expedition will be publically available through NOAA Archives.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EK60 Water Column Sonar Data Collected During EX2303

From June 5-20, 2023 (Dutch Harbor, Alaska to Kodiak, Alaska), NOAA Ocean Exploration conducted mapping operations off the coast of the Aleutian Islands in U.S. waters, aiding in closing bathymetric gaps within this region. Expedition EX2303 collected 37,601 square kilometers of bathymetry and associated water column within the U.S. Exclusive Economic Zone and Territorial Sea deeper than 200 m. During mapping operations, NOAA Ocean Exploration simultaneously collected EM 304 multibeam sonar bathymetry observations and Simrad EK60/EK80 split-beam fisheries sonar observations of biologic material in the water column, as well as Knudsen 3260 sub-bottom profiler observations of sub-seafloor geologic structure and sediment. A focused survey region targeted potential geological hazards along the Aleutian Trench. During the expedition, one CTD cast collected water samples for environmental DNA (eDNA) analysis. The exploratory mapping operations conducted during this cruise will provide initial characterization of the region, as well as data to support further exploration.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - Peterson - Mount Rainier High - TSME - ITRDB WA103

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Tree Ring. The data include parameters of tree ring with a geographic location of Washington, United States Of America. The time period coverage is from 252 to -42 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: biological records, climate indicators, continent, doc/noaa/nesdis/ncei, earth science, land records, latitude 46.83, longitude -121.75, material: null, mount rainier high, mountain hemlock, national centers for environmental information, nesdis, noaa, north america, paleoclimate, paleoclimate indicators, tree ring, tree rings, tree-ring, tsme, tsuga mertensiana (bong.) carriã¨re, u.s. department of commerce, united states of america, washington, what: age, what: total ring width, width
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EM304 Water Column Sonar Data Collected During EX2303

From June 5-20, 2023 (Dutch Harbor, Alaska to Kodiak, Alaska), NOAA Ocean Exploration conducted mapping operations off the coast of the Aleutian Islands in U.S. waters, aiding in closing bathymetric gaps within this region. Expedition EX2303 collected 37,601 square kilometers of bathymetry and associated water column within the U.S. Exclusive Economic Zone and Territorial Sea deeper than 200 m. During mapping operations, NOAA Ocean Exploration simultaneously collected EM 304 multibeam sonar bathymetry observations and Simrad EK60/EK80 split-beam fisheries sonar observations of biologic material in the water column, as well as Knudsen 3260 sub-bottom profiler observations of sub-seafloor geologic structure and sediment. A focused survey region targeted potential geological hazards along the Aleutian Trench. During the expedition, one CTD cast collected water samples for environmental DNA (eDNA) analysis. The exploratory mapping operations conducted during this cruise will provide initial characterization of the region, as well as data to support further exploration.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EM304 Water Column Sonar Data Collected During EX2309

From November 30 - December 8, 2023 (San Francisco, California to San Francisco, California) NOAA Ocean Exploration conducted EXPRESS: West Coast Exploration (EX2309), an AUV and mapping expedition, along the central Californian coast. Operations during this 9-day expedition included mapping operations and drop camera operations in the Channel Islands National Marine Sancutary and along the Central California coast. Unfortunately due to weather and logitics onboard the ship, only one AUV dive was conducted. This dive was located in CINMS and coresponds to a calibration that was needed to complete the dataset for EX2308 in collaboration with the University of Southern Mississippi's (an OECI affiliate) AUVs Eagle Ray. Five drop camera deployments were conducted in partnership with Ocean Discovery League as part of the development of their new lightweight, low cost camera system, Maka Nui. EX2309 also collected 6,375 square kilometers of seafloor bathymetry and associated water column data using the EM304 multibeam sonar, all within the US EEZ. Data associated with this expedition will be publically available through NOAA Archives.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EM304 Water Column Sonar Data Collected During EX2306

From August 23rd - September 14th, 2023 (Kodiak, Alaska to Seward, Alaska), NOAA Ocean Exploration conducted Seascape Alaska 5: Gulf of Alaska Remotely Operated Vehicle Exploration and Mapping (EX2306), a remotely operated vehicle (ROV) and mapping expedition to the Gulf of Alaska. Operations during this 23-day expedition included the completion of 19 successful remotely operated vehicle (ROV) dives, which were conducted in water depths ranging from 253.1 m to 4261.5 m for approximately 87 hours of bottom time and resulted in the collection of 383 samples. EX2306 also collected more than 28,000 sq. km of seafloor bathymetry and associated water column data using an EM 304 multibeam sonar. All data associated with this expedition will be archived within 120 days of the end of the expedition and will be publicly available through the NOAA Archives.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NOAA/WDS Paleoclimatology - Morino fire data from Upper Fillmore Side Canyon #1 - IMPD USSCI001

This archived Paleoclimatology Study is available from the NOAA National Centers for Environmental Information (NCEI), under the World Data Service (WDS) for Paleoclimatology. The associated NCEI study type is Fire. The data include parameters of fire history|tree ring with a geographic location of New Mexico, United States Of America. The time period coverage is from 355 to -42 in calendar years before present (BP). See metadata information for parameter and study location details. Please cite this study when using the data.

Tags: climate indicators, continent, doc/noaa/nesdis/ncei, earth science, fire history, fire history|tree ring, fire scar dates, land records, latitude 32.33253, longitude -106.5601, material: null, material: wood, national centers for environmental information, nesdis, new mexico, noaa, north america, paleoclimate, paleoclimate indicators, pinus ponderosa douglas ex c. lawson, pipo, ponderosa pine, u.s. department of commerce, united states of america, upper fillmore side canyon #1, western yellow pine, what: age, what: tree demographic and injury and fire event code
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EK60 Water Column Sonar Data Collected During EX2306

From August 23rd - September 14th, 2023 (Kodiak, Alaska to Seward, Alaska), NOAA Ocean Exploration conducted Seascape Alaska 5: Gulf of Alaska Remotely Operated Vehicle Exploration and Mapping (EX2306), a remotely operated vehicle (ROV) and mapping expedition to the Gulf of Alaska. Operations during this 23-day expedition included the completion of 19 successful remotely operated vehicle (ROV) dives, which were conducted in water depths ranging from 253.1 m to 4261.5 m for approximately 87 hours of bottom time and resulted in the collection of 383 samples. EX2306 also collected more than 28,000 sq. km of seafloor bathymetry and associated water column data using an EM 304 multibeam sonar. All data associated with this expedition will be archived within 120 days of the end of the expedition and will be publicly available through the NOAA Archives.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EK60 Water Column Sonar Data Collected During EX2308

From October 21 â November 10, 2023 (San Francisco, California to San Francisco, California) NOAA Ocean Exploration conducted EXPRESS: Exploration of Central California Coast (EX2308), an AUV and mapping expedition, along the central Californian coast. Operations during this 21-day expedition included the completion of 5 successful autonomous underwater vehicle (AUV) dives with the University of Southern Mississippiâs (an OECI affiliate) AUVs Eagle Ray and Mola Mola, conducted in water depths ranging from ~400 m to 1954 m for approximately 66 hours and 55 minutes of dive time. EX2308 also collected 22,259 sq. km of seafloor bathymetry and associated water column data using the EM304 multibeam sonar, all within the US EEZ. All data associated with this expedition will be archived within 120 days of the end of the expedition and will be publically available through NOAA Archives.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, unknown, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Deep Learning for Water Quality

Streamflow data (Fig. 1a) from the Global Streamflow Indices and Metadata Archive (GSIM) were compiled from repositories at https://doi.org/10.1594/PANGAEA.887477 and https://doi.org/10.1594/PANGAEA.887470. Water-quality data (Fig. 1b) from the Global River Water Quality Archive (GRQA) were downloaded from https://doi.org/10.5281/zenodo.7056647. 

This dataset is associated with the following publication:
Zhi, W., A. Appling, H. Golden, J. Podgorski, and L. Li. Deep Learning for Water Quality.   Nature Water. Nature Portfolio, Berlin,  GERMANY, 2: 228–241, (2024).

Tags: deep-learning, machine-learning, modeling, water-quality
Organization: U.S. Environmental Protection Agency
A fecal score approximation model for analysis of real-time quantitative PCR fecal source identification measurements

HF183/BacR287 qPCR standard control material and water sample measurements used to compare Bayesian and Traditional Fecal Score models. 

This dataset is associated with the following publication:
Sivaganesan, M., J. Willis, A. Diedrich, and O. Shanks. A fecal score approximation model for analysis of real-time quantitative PCR fecal source identification measurements.   WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 255: 121482, (2024).

Tags: fecal-score, fecal-score-ratio, fecal-source-identification, microbial-source-tracking, qpcr
Organization: U.S. Environmental Protection Agency
Quantitative Fecal Source Characterization of Urban Municipal Storm Sewer System Outfall ‘Wet’ and ‘Dry’ Weather Discharges

Data for Figures 2-5. 

This dataset is associated with the following publication:
Shanks, O., A. Diedrich, M. Sivaganesan, J. Willis, and A. Shrifi. Quantitative fecal source characterization of urban municipal storm sewer system outfall ‘wet’ and ‘dry’ weather discharges.   WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 259: 121857, (2024).

Tags: censored-data, fecal-source-identification, global-information-system, qpcr, stormwater
Organization: U.S. Environmental Protection Agency
Effects of multi-walled carbon nanotubes on gene and microRNA expression in human hepatocarcinoma HepG2 cells

Dataset for 'Effects of multi-walled carbon nanotubes on gene and microRNA expression in human hepatocarcinoma HepG2 cells' by Sheau-Fung Thai et al., accepted by Materials Express. 

For the data set:

DEG: differentially expressed genes
33-MWCNT: parent MWCNT
55-OH-MWCNT: MWCNT modified with -OH group
66-COOH-MWCNT: MWCNT modified with -COOH group.
MWCNT_66_30 means cells treated with 66-COOH-MWCNT at 30 microgram/ml. 

This dataset is associated with the following publication:
Thai, S., C. Jones, B. Robinette, H. Ren, B. Vallanat, A. Astriab Fisher, and K. Kitchin. Effects of multi-walled carbon nanotubes on gene and microRNA expression in human hepatocarcinoma HepG2 cells.   Materials Express. American Scientific Publishers, VALENCIA, CA, USA, 14(3): 403-415, (2024).

Tags: acute-phase-response-signaling, cholesterol-biosynthesis-pathways, hepg2-cells, microrna, multi-wall-carbon-nanotubes, oxidative-stress, signaling-pathways, target-filter-analysis, transcriptomics
Organization: U.S. Environmental Protection Agency
Relating Fish Populations to Scleractinian Reef Structure

These files contain field data from 3 coral reef surveys, 2 in Puerto Rico and one in Flower Garden Banks. Calculations are made to explore correlations between stony coral physical (size and shape) and biological (diversity and condition) with fish density, biomass and diversity. 

This dataset is associated with the following publication:
Fisher, W. Relating fish populations to coral colony size and complexity.   ECOLOGICAL INDICATORS. Elsevier Science Ltd, New York, NY, USA, 148: 110117, (2023).

Tags: coral-reef, coral-size, fish-habitat, rugosity, stony-corals, topographic-complexity
Organization: U.S. Environmental Protection Agency