AndreaBozzo/ceres-open-data-index huggingface dataset:
Genetics rayed creekshell

This dataset supports the inclusion of Anodontoides radiatus in the genus Strophitus, introducing the binomial Strophitus radiatus. These data also provide strong support for paraphyly in Strophitus and advocate the resurrection of the genus Pseudodontoides to represent the binomials Pseudodontoides connasaugaensis and Pseudodontoides subvexus.

Tags: biota, cryptic-species, generic-reclassification, incomplete-lineage-sorting, integrative-taxonomy, phylogenetic-systematics, species-delimitation, species-diversity, systematics-and-taxonomy, usgs-59259b53e4b0b7ff9fb3c95e
Organization: Department of the Interior
Coastwide Reference Monitoring System (CRMS) 2005, 2008, 2012, and 2015 Site 0672 Land-Water Matrix

Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection, and Restoration Act (CWPPRA) in Louisiana rely on monitoring efforts to determine the efficacy of these efforts. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum.  As part of CRMS, land and water classifications are created from Wetland restoration efforts conducted by the Coastal Wetlands Planning, Protection, and Restoration Act (CWPPRA) in Louisiana rely on monitoring efforts to determine the efficacy of these efforts. The Coastwide Reference Monitoring System (CRMS) was developed to assist in a multiple-reference approach that uses aspects of hydrogeomorphic functional assessments and probabilistic sampling for monitoring. The CRMS program includes a suite of approximately 390 sites that encompass the range of hydrological and ecological conditions for each stratum.  As part of CRMS, land and water classifications are created from Digital Orthophoto Quarter Quadrangles (DOQQs) approximately every three years at all CRMS sites.  This dataset consists of a matrix of four land-water products (2005, 2008, 2012, and 2015).  The resulting matrix has 16 possible classes defined by the combination of land and water categories on those four dates.

Tags: cartography, coastal, crms, doqq, geographic-information-system, imagerybasemapsearthcover, land-water, louisiana, mapping, marsh, protection, restoration, state-of-louisiana, usgs-5938777be4b0764e6c5d6cb9, wetland
Organization: Department of the Interior
Processing units used in developing the raster layers for the Hydrologic Derivatives for Modeling and Analysis (HDMA) database -- South America

This dataset contains the processing units for the South American continent from the Hydrological Derivatives for Modeling and Analysis (HDMA) database. The HDMA database provides comprehensive and consistent global coverage of raster and vector topographically derived layers, including raster layers of digital elevation model (DEM) data, flow direction, flow accumulation, slope, and compound topographic index (CTI); and vector layers of streams and catchment boundaries. The coverage of the data is global (-180º, 180º, -90º, 90º) with the underlying DEM being a hybrid of three datasets: HydroSHEDS (Hydrological data and maps based on SHuttle Elevation Derivatives at multiple Scales), Global Multi-resolution Terrain Elevation Data 2010 (GMTED2010) and the Shuttle Radar Topography Mission (SRTM). For most of the globe south of 60º North, the raster resolution of the data is 3-arc-seconds, corresponding to the resolution of the SRTM. For the areas North of 60º, the resolution is 7.5-arc-seconds (the smallest resolution of the GMTED2010 dataset) except for Greenland, where the resolution is 30-arc-seconds. The streams and catchments are attributed with Pfafstetter codes, based on a hierarchical numbering system, that carry important topological information.

Tags: dem-stream-hydrologic-derivatives-pfafstetter, digital-elevation-models, elevation, imagerybasemapsearthcover, pfafstetter, streams, usgs-59258786e4b0b7ff9fb3c91f
Organization: Department of the Interior
Streams layers from the Hydrologic Derivatives for Modeling and Analysis (HDMA) database -- South America

This dataset contains the streams derived from the Digital Elevation Model (DEM) for the South American continent from the Hydrological Derivatives for Modeling and Analysis (HDMA) database. The HDMA database provides comprehensive and consistent global coverage of raster and vector topographically derived layers, including raster layers of digital elevation model (DEM) data, flow direction, flow accumulation, slope, and compound topographic index (CTI); and vector layers of streams and catchment boundaries. The coverage of the data is global (-180º, 180º, -90º, 90º) with the underlying DEM being a hybrid of three datasets: HydroSHEDS (Hydrological data and maps based on SHuttle Elevation Derivatives at multiple Scales), Global Multi-resolution Terrain Elevation Data 2010 (GMTED2010) and the Shuttle Radar Topography Mission (SRTM). For most of the globe south of 60º North, the raster resolution of the data is 3-arc-seconds, corresponding to the resolution of the SRTM. For the areas North of 60º, the resolution is 7.5-arc-seconds (the smallest resolution of the GMTED2010 dataset) except for Greenland, where the resolution is 30-arc-seconds. The streams and catchments are attributed with Pfafstetter codes, based on a hierarchical numbering system, that carry important topological information.

Tags: dem-stream-hydrologic-derivatives-pfafstetter, digital-elevation-models, elevation, inlandwaters, pfafstetter, streams, usgs-5925872ee4b0b7ff9fb3c91c
Organization: Department of the Interior
Catchments layers from the Hydrologic Derivatives for Modeling and Analysis (HDMA) database -- South America

This dataset contains the catchments derived from the Digital Elevation Model (DEM) for the South American continent from the Hydrological Derivatives for Modeling and Analysis (HDMA) database. The HDMA database provides comprehensive and consistent global coverage of raster and vector topographically derived layers, including raster layers of digital elevation model (DEM) data, flow direction, flow accumulation, slope, and compound topographic index (CTI); and vector layers of streams and catchment boundaries. The coverage of the data is global (-180º, 180º, -90º, 90º) with the underlying DEM being a hybrid of three datasets: HydroSHEDS (Hydrological data and maps based on SHuttle Elevation Derivatives at multiple Scales), Global Multi-resolution Terrain Elevation Data 2010 (GMTED2010) and the Shuttle Radar Topography Mission (SRTM). For most of the globe south of 60º North, the raster resolution of the data is 3-arc-seconds, corresponding to the resolution of the SRTM. For the areas North of 60º, the resolution is 7.5-arc-seconds (the smallest resolution of the GMTED2010 dataset) except for Greenland, where the resolution is 30-arc-seconds. The streams and catchments are attributed with Pfafstetter codes, based on a hierarchical numbering system, that carry important topological information.

Tags: dem-stream-hydrologic-derivatives-pfafstetter, digital-elevation-models, elevation, inlandwaters, pfafstetter, streams, usgs-59258654e4b0b7ff9fb3c916
Organization: Department of the Interior
Widespread Legacy Brine Contamination from Oil Shales Reduces Survival of Chorus Frog Larvae-Data

Advances in drilling technique have facilitated a rapid increase in hydrocarbon extraction from energy shales, including the Williston Basin in central North America. This area overlaps with the Prairie Pothole Region and greater than 35% of wetlands are less than or equal to 1 km from a petroleum-related well. Legacy practices often released saline co-produced waters (brines) that were chloride rich wastes, affecting wetland water quality directly or persisting in sediments. Despite the potential threat of brine contamination to aquatic habitats, there has been little research into their ecological effects. We capitalized on a gradient of legacy brine-contaminated wetlands in northeast Montana to conduct laboratory experiments to assess variation in survival of larval Boreal Chorus Frogs (Pseudacris maculata) reared on sediments from 3 local wetlands and a control source. To help provide environmental context for the experiment, we also measured chloride concentrations in 6 brine-contaminated wetlands in our study area, including the 2 contaminated sites used for sediment exposures.

Tags: amphibians, aquatic-biology, environment, prairie-pothole-region, salinization, usgs-59247b0be4b0b7ff9fb272f3, water-pollution, water-quality, west-bearskin-lake, wetland-ecosystems, williston-basin
Organization: Department of the Interior
Change in water-table altitude in the alluvium in the Lower Arkansas River Valley, Southeast Colorado, Spring 2002 to Spring 2008

Raster showing change in water-table altitude between Spring of 2002 and Spring of 2008 in the alluvium in the Lower Arkansas River Valley, Southeast Colorado. Hereafter "spring" is defined as the periods of January 1 to May 31, and December 1 to December 31. All interpolation and geoprocessing was done using ArcGIS Desktop v10 (Environmental Systems Research Institute, 2011).

Tags: alluvium, arkansas-river, bent-county, crowley-county, groundwater, groundwater-level, hydrogeology, otero-county, prowers-county, pueblo-county, surface-water-level, usgs-58e3b2b6e4b09da67997edf6
Organization: Department of the Interior
Point locations for earthquakes M2.5 and greater in a two-year aftershock sequence resulting from the HayWired scenario earthquake mainshock (4/18/2018) in the San Francisco Bay area, California

This dataset represents the spatial locations of all modeled aftershocks magnitude 2.5 and greater resulting from the HayWired M7.0 mainshock occurring on April 18, 2018 along the Hayward Fault. The date/time, horizontal and vertical location, and sequence position is provided for each aftershock. The spatial extent covers 24 counties in whole or in part, corresponding to the modeled shaking extent for the HayWired mainshock ShakeMap (available at https://earthquake.usgs.gov/scenarios/eventpage/ushaywiredm7.05_se#shakemap). The sequence is simulated based on several known statistical relationships and generated using an epidemic type aftershock sequence (ETAS) model, resulting in one possible aftershock sequence. Secondary aftershocks (aftershocks caused by other aftershocks) are also simulated in the ETAS model. Expert opinion was used to determine the appropriateness of (and correct when necessary) the locations, magnitudes, and depths for all modeled aftershocks magnitude 5 or greater.
These vector-based point .SHP data were developed and are intended for use in GIS applications such as ESRI's ArcGIS software suite. 
These data support the following publication:
Wein, A., Felzer, K.R., Jones, J.L., and Porter, Keith, 2017, HayWired scenario aftershock sequence, in Detweiler, S.T., and Wein, Anne, eds., The HayWired earthquake scenario—Earthquake hazards: U.S. Geological Survey Scientific Investigations Report 2017-5013–A–G, 22 p., https://doi.org/10.3133/sir20175013.

Tags: aftershocks, california, earthquake-occurrences, earthquakes, haywired, hazards, san-francisco-bay-area, usgs-58e64e71e4b09da6799ac73d
Organization: Department of the Interior
Wind rose plots for the volcano: 341031  Mascota Volcanic Field

This zip folder contains ASCII text files of vectors at the specified volcano at 
12-hour intervals, 
from January 1, 1990 through December 28, 2009.  
The wind vectors are divided into five files, names by their elevation range above 
sea level in the atmosphere: 00-05km.txt; 05-11km.txt; 11-16km.txt; 16-24km.txt; 
and 24-30km.txt. 
The zip folder also contains a subfolder "figures", with Wind rose plots of wind 
direction and speed over 
this time period.  The plots are by season, and by elevation, given a total of 20 
plots (4 seasons, 5 
elevation ranges).  A summary plot is also included which gives the year-round 
wind pattern at the volcano, 
at 0-5 km elevation.  Plots are in both jpg and pdf format.

Tags: meteorology, usgs-58d0167ee4b0236b68f530c2, volcanic-ash, volcanic-eruption-forecasting, wind
Organization: Department of the Interior
Establishing a baseline: the amphibians of Lower Suwannee National Wildlife Refuge, Dixie and Levy counties, Florida

From 2002-2006, we used a variety of sampling techniques to survey the amphibians and water chemistry of Lower Suwannee National Wildlife Refuge in Florida’s Big Bend region. We recorded 23 amphibian species, 19 frogs and 4 salamanders. Species richness was lower than in areas of the coastal Big Bend region to the north. Amphibians occupied a wide variety of habitats and appeared tolerant of the generally acidic conditions of many of the wetlands. Although additional species may yet be found in LSNWR, this survey provides a historic baseline for assessing future status and trends of amphibian populations.

Tags: amphibians, biodiversity, inventory, sampling, usgs-58f50b4ae4b0f6ac3c403896, usgs-armi
Organization: Department of the Interior
HEC-RAS Model Boundary for Flood Inundation Maps for Johnson Creek at Sycamore gage, Portland, Oregon

The basis for these features is U.S. Geological Survey Scientific Investigation Report 2017-5024 Flood Inundation Mapping Data for Johnson Creek near Sycamore, Oregon. The domain of the HEC-RAS hydraulic model is a 12.9 mile reach of Johnson Creek from just upstream of SE 174th Avenue in Portland, Oregon to its confluence with the Willamette River. Some of the hydraulics used in the model were taken from Federal Emergency Management Agency, 2010, Flood Insurance Study, City of Portland, Oregon, Multnomah, Clackamas and Washington Counties, Volume 1 of 3, November 26, 2010. The Digital Elevation Model (DEM) utilized for the project was developed from LiDAR data flown in 2015 and provided by the Oregon Department of Geology and Mineral Industries. Bridge decks are generally removed from DEMs as standard practice. Therefore, these features may be shown as inundated when they are not. Judgement should be used when estimating the usefulness of a bridge during flood flow. Comparing the bridge to the surrounding ground can be more informative in this respect than simply looking at the bridge itself. Two model plans were used in the creation of the flood layers. The first is a stable model plan using unsteady flow in which the maximum streamflow is held in place for a long period of time (a number of days) in order to replicate a steady model using an unsteady plan. The stable model plan produced the areas of uncertainty contained in the sycor_breach.shp shapefile. The second is an unstable model plan that uses unsteady flow in which the full hydrograph (rising and falling limb) is represented based on the hydrograph shape of the December 2015 peak annual flood.  The unstable model plan produced the flood extent polygons contained in the sycor.shp shapefile and the depth rasters and represents the best estimate of flood inundation for the given streamflow at U.S. Geological Survey streamgage 14211500.

Tags: digital-elevation-models, floods, hydrology, inlandwaters, johnson-creek, portland-oregon, stream-discharge, streamflow, usgs-58f4fe5de4b0f6ac3c403815, willamette-valley
Organization: Department of the Interior
Areas of Uncertainty for Flood Inundation Extents at Gage 14211500, Johnson Creek near Sycamore, Oregon (sycor_breach.shp)

The basis for these features is U.S. Geological Survey Scientific Investigation Report 2017-5024 Flood Inundation Mapping Data for Johnson Creek near Sycamore, Oregon. The domain of the HEC-RAS hydraulic model is a 12.9 mile reach of Johnson Creek from just upstream of SE 174th Avenue in Portland, Oregon to its confluence with the Willamette River. Some of the hydraulics used in the model were taken from Federal Emergency Management Agency, 2010, Flood Insurance Study, City of Portland, Oregon, Multnomah, Clackamas and Washington Counties, Volume 1 of 3, November 26, 2010. The Digital Elevation Model (DEM) utilized for the project was developed from LiDAR data flown in 2015 and provided by the Oregon Department of Geology and Mineral Industries. Bridge decks are generally removed from DEMs as standard practice. Therefore, these features may be shown as inundated when they are not. Judgement should be used when estimating the usefulness of a bridge during flood flow. Comparing the bridge to the surrounding ground can be more informative in this respect than simply looking at the bridge itself. Two model plans were used in the creation of the flood layers. The first is a stable model plan using unsteady flow in which the maximum streamflow is held in place for a long period of time (a number of days) in order to replicate a steady model using an unsteady plan. The stable model plan produced the areas of uncertainty contained in the sycor_breach.shp shapefile. The second is an unstable model plan that uses unsteady flow in which the full hydrograph (rising and falling limb) is represented based on the hydrograph shape of the December 2015 peak annual flood.  The unstable model plan produced the flood extent polygons contained in the sycor.shp shapefile and the depth rasters and represents the best estimate of flood inundation for the given streamflow at U.S. Geological Survey streamgage 14211500.

Tags: digital-elevation-models, floods, hydrology, inlandwaters, johnson-creek, portland-oregon, stream-discharge, streamflow, usgs-58f4fdd3e4b0f6ac3c40380b, willamette-valley
Organization: Department of the Interior
Fish abundance in the Elwha River estuary, Washington, from 2006 to 2014

This portion of the data release presents fish abundance data from samples collected in the Elwha River estuary, Washington, in 2006, 2007, 2013, and 2014 (no associated USGS Field Activities numbers because data were collected predominantly by biologists from the Lower Elwha Klallam Tribe). We used the Puget Sound beach seining protocol (Simenstad and others, 1991) to sample fish populations in the Elwha River estuary complex. The beach seine was 38 m long x 2 m deep, with a 2 m x 2 m bag in the center of the net; mesh size was 3.18 mm, 6.35 mm, and 31.75 mm, for the bag, center panel, and wings, respectively. The seine net was deployed from bank to bank by a small skiff and then pulled on shore. The number of seines conducted each month varied based on estuary conditions and staff availability. Captured fish were quickly transferred to 20-liter plastic buckets filled with aerated estuary water, individually identified, counted, measured, and released at the point of capture. The locations of seines were determined with a hand-held global positioning system (GPS). Fish abundance is reported as catch per unit effort (CPUE), calculated as the total number of each fish species caught in all seines at each site and date, divided by the number of seines conducted. Fish abundance data are provided in a comma-delimited spreadsheet (.csv).

Tags: biota, clallam-county, elwha-river, fish, fishes, oceans, olympic-peninsula, species-diversity, state-of-washington, strait-of-juan-de-fuca, usgs-58f4f859e4b003da51f65dfc
Organization: Department of the Interior
Aquatic invertebrate abundance in the Elwha River estuary, Washington, in 2007 and 2013

This portion of the data release presents aquatic invertebrate abundance data from samples collected in the Elwha River estuary, Washington, in 2007 and 2013 (no associated USGS Field Activities numbers because data were collected predominantly by biologists from the Lower Elwha Klallam Tribe). Replicate benthic samples were collected at 18 locations throughout the estuary complex using a petite Ponar grab sampler (appx. 2400 mL sample) and sorted through a 500-micron sieve. Samples were fixed in 10 percent formalin for 3 to 5 days before being transferred to 70 percent ethanol until processing. Individuals were identified to the lowest possible taxonomic resolution, but are grouped according to insect Orders in the data for consistency (unless otherwise noted in the attributes). The locations of samples were determined with a hand-held global positioning system (GPS). Aquatic invertebrate abundance data (including fractions of individuals) are provided in a comma-delimited spreadsheet (.csv).

Tags: animals-invertebrates, biota, clallam-county, elwha-river, invertebrates, oceans, olympic-peninsula, species-diversity, state-of-washington, strait-of-juan-de-fuca, usgs-58f4f828e4b003da51f65dfa
Organization: Department of the Interior
Flood Inundation Extents for Flows of 800 to 3,080 cfs at Gage 14211500, Johnson Creek near Sycamore, Oregon (sycor.shp)

The basis for these features is U.S. Geological Survey Scientific Investigation Report 2017-5024 Flood Inundation Mapping Data for Johnson Creek near Sycamore, Oregon. The domain of the HEC-RAS hydraulic model is a 12.9 mile reach of Johnson Creek from just upstream of SE 174th Avenue in Portland, Oregon to its confluence with the Willamette River. Some of the hydraulics used in the model were taken from Federal Emergency Management Agency, 2010, Flood Insurance Study, City of Portland, Oregon, Multnomah, Clackamas and Washington Counties, Volume 1 of 3, November 26, 2010. The Digital Elevation Model (DEM) utilized for the project was developed from LiDAR data flown in 2015 and provided by the Oregon Department of Geology and Mineral Industries. Bridge decks are generally removed from DEMs as standard practice. Therefore, these features may be shown as inundated when they are not. Judgement should be used when estimating the usefulness of a bridge during flood flow. Comparing the bridge to the surrounding ground can be more informative in this respect than simply looking at the bridge itself. Two model plans were used in the creation of the flood layers. The first is a stable model plan using unsteady flow in which the maximum streamflow is held in place for a long period of time (a number of days) in order to replicate a steady model using an unsteady plan. The stable model plan produced the areas of uncertainty contained in the sycor_breach.shp shapefile. The second is an unstable model plan that uses unsteady flow in which the full hydrograph (rising and falling limb) is represented based on the hydrograph shape of the December 2015 peak annual flood.  The unstable model plan produced the flood extent polygons contained in the sycor.shp shapefile and the depth rasters and represents the best estimate of flood inundation for the given streamflow at U.S. Geological Survey streamgage 14211500.

Tags: digital-elevation-models, floods, hydrology, inlandwaters, johnson-creek, portland-oregon, stream-discharge, streamflow, usgs-58f4f3a1e4b003da51f65d9c, willamette-valley
Organization: Department of the Interior