AndreaBozzo/ceres-open-data-index huggingface dataset:
Coupling of organic and inorganic systems and the effect on gas-particle partitioning in the southeastern United States

Several models were used to describe the partitioning of ammonia, water, and organic compounds between the gas and particle phases for conditions in the southeastern US during summer 2013. Existing equilibrium models and frameworks were found to be sufficient, although additional improvements in terms of estimating pure-species vapor pressures are needed. Thermodynamic model predictions were consistent, to first order, with a molar ratio of ammonium to sulfate of approximately 1.6 to 1.8 (ratio of ammonium to 2  ×  sulfate, RN∕2S  ≈  0.8 to 0.9) with approximately 70 % of total ammonia and ammonium (NHx) in the particle. Southeastern Aerosol Research and Characterization Network (SEARCH) gas and aerosol and Southern Oxidant and Aerosol Study (SOAS) Monitor for AeRosols and Gases in Ambient air (MARGA) aerosol measurements were consistent with these conditions. CMAQv5.2 regional chemical transport model predictions did not reflect these conditions due to a factor of 3 overestimate of the nonvolatile cations. In addition, gas-phase ammonia was overestimated in the CMAQ model leading to an even lower fraction of total ammonia in the particle. Chemical Speciation Network (CSN) and aerosol mass spectrometer (AMS) measurements indicated less ammonium per sulfate than SEARCH and MARGA measurements and were inconsistent with thermodynamic model predictions. Organic compounds were predicted to be present to some extent in the same phase as inorganic constituents, modifying their activity and resulting in a decrease in [H+]air (H+ in µg m−3 air), increase in ammonia partitioning to the gas phase, and increase in pH compared to complete organic vs. inorganic liquid–liquid phase separation. In addition, accounting for nonideal mixing modified the pH such that a fully interactive inorganic–organic system had a pH roughly 0.7 units higher than predicted using traditional methods (pH  =  1.5 vs. 0.7). Particle-phase interactions of organic and inorganic compounds were found to increase partitioning towards the particle phase (vs. gas phase) for highly oxygenated (O : C  ≥  0.6) compounds including several isoprene-derived tracers as well as levoglucosan but decrease particle-phase partitioning for low O : C, monoterpene-derived species. 

This dataset is associated with the following publication:
Pye, H., W. Appel, H. Foroutan, A. Zuend, J. Fry, G. Isaacman-VanWertz , N.L. Ng, A. Goldstein, S. Capps, and L. Xu. Coupling of organic and inorganic aerosol systems and the effect on gas–particle partitioning in the southeastern US.   Atmospheric Chemistry and Physics. Copernicus Publications, Katlenburg-Lindau,  GERMANY, 18: 357-370, (2018).

Tags: aerosol, ammonia, ammonium, levoglucosan, nitrogen, secondary-organic-aerosol, soa, soas, sulfate
Organization: U.S. Environmental Protection Agency
Nassau Co. cleaned data

Data used for modeling and ms. preparation. 

This dataset is associated with the following publication:
Myer, M., and J. Johnston. Spatiotemporal Bayesian modeling of West Nile virus: Identifying risk of infection in mosquitoes with local-scale predictors.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 650(2): 2818-2829, (2019).

Tags: arboviral, bayesian, spatiotemporal, vector-borne-disease, west-nile
Organization: U.S. Environmental Protection Agency
Multivariate Calibration for Carbon Nanotubes in the Environment Using the Microwave Induced Heating Method

The data set contains the details on the microwave calibrations for carbon nanotubes, the variance predictors and responses by the components applying partial least square regression. Also contains a summary of the model fitness for carbon nanotubes quantification and its corresponding statistics.  The data set includes the quantification of CNTs in different matrices: soil and sludge. 

This dataset is associated with the following publication:
He, Y., S. Al-Abed, and D. Dionysios. Multivariate calibration for carbon nanotubes in the environment using the microwave induced heating method.   Environmental Nanotechnology, Monitoring and Management. Elsevier B.V., Amsterdam,  NETHERLANDS, 11: 100204, (2019).

Tags: carbon-nanomaterials, carbon-nanotubes-properties, nanomaterials-fate-and-transport, nanoparticles
Organization: U.S. Environmental Protection Agency
Associations between access to healthcare, environmental quality, and end-stage renal disease survival time: proportional-hazards models of over 1,000,000 people over 14 years

The USRDS is the largest and most comprehensive national ESRD surveillance system in the US (Collins et al., 2015). The USRDS contains data on all ESRD cases in the US through the Medical Evidence Report CMS-2728 which is mandated for all new patients diagnosed with ESRD (Foley and Collins, 2013). Detailed information about the USRDS can be found on their website (http://www.usrds.org). 

The EQI was constructed for 2000-2005 for all US counties and is composed of five domains (air, water, built, land, and sociodemographic), each composed of variables to represent the environmental quality of that domain. Domain-specific EQIs were developed using principal components analysis (PCA) to reduce these variables within each domain while the overall EQI was constructed from a second PCA from these individual domains (L. C. Messer et al., 2014). To account for differences in environment across rural and urban counties, the overall and domain-specific EQIs were stratified by rural urban continuum codes (RUCCs) (U.S. Department of Agriculture, 2015). This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: Human health data are not available publicly. 
EQI data are available at: https://edg.epa.gov/data/Public/ORD/NHEERL/EQI. Format: Data stored as csv files. 

This dataset is associated with the following publication:
Kosnik, M., D. Reif, D. Lobdell, T. Astell-Burt, X. Feng, J. Hader, and J. Hoppin. Associations between access to healthcare, environmental quality, and end-stage renal disease survival time: Proportional-hazards models of over 1,000,000 people over 14 years.   PLoS ONE. Public Library of Science, San Francisco, CA, USA, 14(3): e0214094, (2019).

Tags: aggregate-exposure, air-quality, built-environment, environmental-quality, hospitals, land-quality, renal-disease, sociodemographic-quality, survival, water-quality
Organization: U.S. Environmental Protection Agency
Output of 18S metabarcoding analysis of grab samples collected from Lake Harsha in 2015 (OTU reads over time and space).

Data associated with the Hydrobiologia article titled "Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding." They include the number of reads and assigned taxonomies for each observational taxonomic unit (OTU) within each sampling date and location. 

This dataset is associated with the following publication:
Banerji, A., M. Bagley, M. Elk, E. Pilgrim, J. Martinson, and J. Santodomingo. Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding.   HYDROBIOLOGIA. Springer, New York, NY, USA, 818(1): 71-86, (2018).

Tags: 18s-rrna-gene, cyanobacteria, dna-metabarcoding, ecological-community, ecological-indicator, eukaryotes, freshwater-lake, harmful-algal-bloom, multipurpose-reservoir, phytoplankton, plankton, trophic-interaction, zooplankton
Organization: U.S. Environmental Protection Agency
Adverse maternal, fetal, and neonatal effects of GenX from oral gestational exposure in Sprague Dawley rats Dataset

Dataset contains summary data (mean, standard error, sample size (n)) for all measured endpoints reported and depicted in the corresponding manuscript. 

This dataset is associated with the following publication:
Conley, J., C. Lambright, N. Evans, M. Strynar, J. McCord, B. McIntyre, G. Travlos, M. Cardon, E. MedlockKakaley, P. Hartig, V. Wilson, and E. Gray. Adverse maternal, fetal, and postnatal effects of Hexafluoropropylene oxide dimer acid (GenX) from oral gestational exposure in Sprague Dawley rats.   ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, USA,  1-13, (2019).

Tags: developmental-toxicity, genx, in-utero-effects-on-reproductive-development, perfluorinated-chemicals, pfas
Organization: U.S. Environmental Protection Agency
ShahSanjivkumar_HS7-53-05-2229_Data-Metadata_Ypestis RVPCR Method_Manuscript

This data set is for a submission of a manuscript to a peer-reviewed journal. A Rapid Viability Polymerase Chain Reaction (RV-PCR) method for detection of Yersinia pestis in water samples was developed under a research project. An final internal report for this work was cleared in the STICS in 2016. This manuscript contains a subset of data from the final report. 

This dataset is associated with the following publication:
Shah, S., S. Kane, T. Alfaro, and A.M. Erler. Development of a Rapid Viability Polymerase Chain Reaction Method for Detection of Yersinia pestis in Water.   JOURNAL OF MICROBIOLOGICAL METHODS. Elsevier Science Ltd, New York, NY, USA, 162: 21-27, (2019).

Tags: bioterrorism, detection, pcr, plague, rapid-viability, water-contamination, yersinia-pestis
Organization: U.S. Environmental Protection Agency
Non Targeted MS1 Features from the analysis of water extracts from the Cape Fear River in May 2017

Application of non-targeted screening to the Cape Fear River of North Carolina in 2016-2018 detailing a location impacted by fluorochemical manufacturing. Dataset contains raw picked peaks from chromatographic separation and MS1 identification, as well as identification based on manual examination of MS2 fragment spectra. Tentative structural identifiers are provided. 

This dataset is associated with the following publication:
McCord, J., and M. Strynar. Identification of Per- and Polyfluoroalkyl Substances in the Cape Fear River by High Resolution Mass Spectrometry and Nontargeted Screening.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 53(9): 4717-4727, (2019).

Tags: cape-fear-river, genx, hfpo-da, non-targeted-analysis-nta, perfluorinated-ether, polyfluorinated-alkyl-substances-pfas
Organization: U.S. Environmental Protection Agency
Screening an alternative flame retardant using biological and transcriptomic endpoints in fish embryos

GEO accession information for omics RNA-seq data. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE116393. Format: GEO accession information for omics RNA-seq data. 

This dataset is associated with the following publication:
Huang, W., D. Bencic, R. Flick, D. Nacci, B. Clark, L. Burkhard, T. Lahren, and A. Biales. Characterization of the Fundulus heteroclitus embryo transcriptional response and development of a gene expression-based fingerprint of exposure for the alternative flame retardant, TBPH (bis (2-ethylhexyl)-tetrabromophthalate).   ENVIRONMENTAL POLLUTION. Elsevier Science Ltd, New York, NY, USA, 247: 696-705, (2019).

Tags: ahr, fundulus, gene-expression, omics-biomarker, tbph
Organization: U.S. Environmental Protection Agency
IN UTERO EFFECTS OF ORAL SIMVASTATIN ON THE CRSD RAT DAM, DETUS AND OFFSPRING LATER IN LIFE

DATA FROM THE MANUSCRIPT BY BEVERLY ET AL 2019 FOR ALL TABLES AND FIGURES. 

This dataset is associated with the following publication:
Beverly, B., J. Furr , C. Lambright , V. Wilson , B. MCINTYRE, P. FOSTER, G. TRAVLOS, and E. Gray. In utero exposure to Simvastatin reduces postnatal survival and permanently alters reproductive tract development in the CRL:CD(SD) male rat.   TOXICOLOGY AND APPLIED PHARMACOLOGY. Academic Press Incorporated, Orlando, FL, USA,  112-123, (2019).

Tags: in-utero-effects-on-reproductive-development, pharmaceuticals, reproductive-development
Organization: U.S. Environmental Protection Agency
Bunker Hill Superfund Site (BHSS) soil and dust ingestion

Longitudinal environmental Pb concentration data, children's blood Pb levels, bioavailability information and estimated soil and dust ingestion rates by age for children exposed to Pb at the BHSS. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: Through a request to TerraGraphics. Format: Longitudinal environmental Pb concentration data, children's blood Pb levels, bioavailability information and estimated soil and dust ingestion rates by age for children exposed to Pb at the BHSS. 

This dataset is associated with the following publication:
von Lindern, I., M. Stifelman , L. Stanek , and C. Bartrem. Estimating Children’s Soil/Dust Ingestion Rates through Retrospective Analyses of Blood Lead Biomonitoring from the Bunker Hill Superfund Site in Idaho.   ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, USA, 124: 1462–1470, (2016).

Tags: blood-lead, bunker-hill-superfund-site, children, dust-ingestion-rates, ingestion, lead, pb, soil-ingestion-rates
Organization: U.S. Environmental Protection Agency
excell file with metadata sheet and data from the PFQ and BPC paper

this file has the metadata sheet and the data used for the figures and tables in the PFQ vs BPC manuscript. 

This dataset is associated with the following publication:
Gray, E., J. Furr, J. Conley, C. Lambright, N. Evans, M. Cardon, V. Wilson, P. Foster, and P. Hartig. A Conflicted Tale of Two Novel AR Antagonists In vitro and In vivo: Pyrifluquinazon versus Bisphenol C..   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,   632-643, (2019).

Tags: antiandrogenicity, bisphenols, in-utero, in-vitro-to-in-vivo-extrapoaltion-ivive, male-sexual-differentiation, pesticides, reproductive-tract-malformations-and-abnormalities
Organization: U.S. Environmental Protection Agency
Urban Greenery and Body Mass Index

The datasets include individual-level BMI in Phoenix, AZ and Portland, OR obtained from the state DMVs, greenery along walkable roads within 500, 1000, 1500, and 2000 network buffers, and covariates. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: EnviroAtlas data can be assessed through https://www.epa.gov/enviroatlas
Individual-level residential location and body mass index can be requested from state DMVs.
Navteq street data can be assessed through EPA internal network by EPA Region. Format: Data used in this study include:
1) EnviroAtlas 1m landcover data (Raster)
2) EnviroAtlas metrics related to street greenery (Raster)
3) Boundaries of neighborhood extents (buffers) (Vector, polygon)
4) Navteq street dataset (Vector, polyline)
5) Individual residential addresses (CSV) and its geocoded points (Vector, point)
6) Individual-level body mass index (CSV)
7) EnviroAtlas Intersection Density of Walkable Roads (Raster)
8) EnviroAtlas Distance to a Park Entrance (Raster)
9) EnviroAtlas Percent Population below the Adjusted Threshold for Quality of Life (CSV)
10) EnviroAtlas Percent Population with Income Twice below the Poverty Level (CSV)
11) EnviroAtlas Percent Non-White Population (CSV)
12) Age and Sex. 

This dataset is associated with the following publication:
Tsai, W., A.S. Davis, and L.E. Jackson. Associations between types of greenery along neighborhood roads and weight status in different climates.   Urban Forestry & Urban Greening. Elsevier B.V., Amsterdam,  NETHERLANDS, 41: 104-107, (2019).

Tags: eco-health, enviroatlas, obesity, street-greenery, urban-green-space
Organization: U.S. Environmental Protection Agency
Peat Smoke_High Fat_All data_Feb2018.xlsx

The data set is an excel spreadsheet containing all the raw data used to generate the tables and figures in the manuscript. 

This dataset is associated with the following publication:
Martin, B., L. Thompson, Y. Kim, W. Williams, S. Snow, M. Schladweiler, P. Phillips, C. King, J. Richards, N. Coates, M. Higuchi, I. Gilmour, U. Kodavanti, M. Hazari, and A. Farraj. Acute Peat Smoke Inhalation Sensitizes Rats to the Postprandial Cardiometabolic Effects of a High Fat Oral Load.   SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM,  NETHERLANDS, 643: 378-391, (2018).

Tags: air-pollution, biomass, cardiovascular, flow-cytometry, high-fat, immune, metabolic, peat, postprandial, pulmonary, rats, smoke, ultrasound, wildland-fire
Organization: U.S. Environmental Protection Agency
Gas-Phase Detection of Fluorotelomer Alcohols and Other Oxygenated PFAS by Chemical Ionization Mass Spectrometry _V1

CIMS calibration curves for the FTOHs and other PFAS for which standards were available. PFOA signals during calibrations and sampling. CIMS unit mass resolution difference mass spectrum for one commercial sample. Molecular composition assignment isotopic distributions. and a. 

This dataset is associated with the following publication:
Riedel, T., J. Lang, M. Strynar, A. Lindstrom, and J. Offenberg. Gas-Phase Detection of Fluorotelomer Alcohols and Other Oxygenated Per- and Polyfluoroalkyl Substances by Chemical Ionization Mass Spectrometry.   Environmental Science & Technology Letters. American Chemical Society, Washington, DC, USA, 6(5): 289-293, (2019).

Tags: cims, gas-phase, measurements, pfas
Organization: U.S. Environmental Protection Agency
DailyRegionalLNOxEmissions05_2018

This dataset contains WRF/CMAQ model output in IOAPI format and Excel file to analyze the NOx emissions budget by month and region. 

This dataset is associated with the following publication:
Kang, D., and K. Pickering. Lightning NOx Emissions and the Implications for Surface Air Quality over the Contiguous United States.   EM:  AIR AND WASTE MANAGEMENT ASSOCIATION'S MAGAZINE FOR ENVIRONMENTAL MANAGERS. Air & Waste Management Association, Pittsburgh, PA, USA,  1-6, (2018).

Tags: air-quality, lightning-nox-emissions, nox-emissions, ozone
Organization: U.S. Environmental Protection Agency
modelsci_hum21.xlxs

Data is in an excel spread sheet, tabbed by figure and table.  Only change is description tab. 

This dataset is associated with the following publication:
Ware, M., and E. Villegas. Propagation of Giardia duodenalis cysts in immunosuppressed CF-1 mice.   Veterinary Parasitology. Elsevier, Shannon,  IRELAND, 268: 32-35, (2019).

Tags: giardia, immunosuppressed-mouse, method-1623-1, propagation
Organization: U.S. Environmental Protection Agency
Dataset for targeted and non-targeted analysis of firefighter breath samples

This dataset includes a list of chemicals used to create the ChromGenius retention time prediction model used for validation of non-targeted compounds. The list of identified non-targeted compounds in the samples is also provided. This dataset is not publicly accessible because: EPA cannot release personally identifiable information regarding living individuals, according to the Privacy Act and the Freedom of Information Act (FOIA). This dataset contains information about human research subjects. Because there is potential to identify individual participants and disclose personal information, either alone or in combination with other datasets, individual level data are not appropriate to post for public access. Restricted access may be granted to authorized persons by contacting the party listed. It can be accessed through the following means: By viewing the analyzed spreadsheets attached to the Journal Article. Format: The original dataset contains identification information for the firefighters who participated in the controlled structure burns. The analyzed data can be made publicly available. 

This dataset is associated with the following publication:
Wallace, A., J. Pleil, K. Oliver, D. Whitaker, S. Mentese, K. Fent, and G. Horn. Non-targeted GC/MS analysis of exhaled breath samples: Exploring human biomarkers of exogenous exposure and endogenous response from professional firefighting activity.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH - PART A:  CURRENT ISSUES. Taylor & Francis, Inc., Philadelphia, PA, USA, 82(4): 244-260, (2019).

Tags: automated-thermal-desorption-atd-gas, chromatography-mass-spectrometry-gc-ms, targeted-and-non-targeted-analysis, volatile-organic-compounds-voc
Organization: U.S. Environmental Protection Agency
Cyanobacterial nitrogen fixation and phosphorus scavenging during a HAB forming

Sequence data retrieved from RNA sequences for primer design. 

This dataset is associated with the following publication:
Lu, J., B. Zhu, I. Stuewing, N. Xu, and S. Duan. Nitrogen–phosphorus-associated metabolic activities during the development of a cyanobacterial bloom revealed by metatranscriptomics.   Scientific Reports. Nature Publishing Group, London,  UK, 9: 2480, (2019).

Tags: cyanobacteria, harmful-algal-bloom, metatranscriptomics, nitrogen, nitrogen-fixation, phosphorus, phosphorus-scavenging
Organization: U.S. Environmental Protection Agency
PM2.5 and Nitrogen Dioxide Concentrations in Penuelas, Puerto Rico

Continuous measurements of PM2.5 and nitrogen dioxide using low cost sensors and citizen science. 

This dataset is associated with the following publication:
Reece, S., R. Williams, M. Colon, D. Southgate, E. Huertas, M. OShea, A. Iglesias, and P. Sheridan. Spatial-Temporal Analysis of PM2.5 and NO2 Concentrations Collected Using Low-Cost Sensors in Peñuelas, Puerto Rico.   Sensors. MDPI AG, Basel,  SWITZERLAND, 18(12): 4314, (2018).

Tags: citizen-science, low-cost-sensor, nitrogen-dioxide, particulate-matter, sensor-performance
Organization: U.S. Environmental Protection Agency