AndreaBozzo/ceres-open-data-index huggingface dataset:
Sequencing Data Set of Sediment Layers

A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target (source), and sequencing (technology) for each individual sample.

The zip file (Genome_Set01.zip) contain nine (9) fasta file (DP_bin_02.fasta, DP_bin_04.fasta, DP_bin_09.fasta, DP_bin_10.fasta, DP_bin_14.fasta, DP_bin_15.fasta, DP_bin_16a.fasta, DP_bin_20.fasta, DP_bin_23.fasta) with the contig sequences (i.e. binning) for each metagenome-assembled genomes (MAGs).

These data are available from the NCBI Sequence Read Archive (SRA) under the BioProject (https://www.ncbi.nlm.nih.gov/bioproject) with accession number PRJNA646252 and the following BioSample numbers: SAMN15536103 to SAMN15536108. 

This dataset is associated with the following publication:
Gomez-Alvarez, V., H. Liu, J. Pressman, and D. Wahman. Metagenomic Profile of Microbial Communities in a Drinking Water Storage Tank Sediment after Sequential Exposure to Monochloramine, Free Chlorine, and Monochloramine.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 1(5): 1283-1294, (2021).

Tags: contigs, denitrification, drinking-water, metagenome-assembled-genome, metagenomes, microbiome, nitrification, storage-tank-sediment, waterborne-pathogens
Organization: U.S. Environmental Protection Agency
DOE User-Facilities and R&D Equipment

This dataset contains information about hundreds of designated user-facilities and R&D equipment funded by the U.S. Department of Energy and accessible to the private sector. These facilities reside at DOE's National Laboratories throughout the United States and are meant to advance scientific research and accelerated technology commercialization.

Tags: accelerator, ames, argonne, beam, berkeley, biofuels, brookhaven, climate-change, commercialization, computers, demonstration, development, electricity, energy, fermilab, fuel-cells, high-performance-computing, hydrogen, idaho, infrastructure, innovation, lab, laboratory, lawrence, livermore, los-alamos, manufacturing, materials, national, oak-ridge, pacific-northwest, renewable-energy, research, sandia, science, slac, solar, technology, technology-transfer, vehicles, wind
Organization: Department of Energy
Data used to produce figures and tables

The data set was used to produce tables and figures in paper. 

This dataset is associated with the following publications:
Lytle, D., S. Pfaller, C. Muhlen, I. Struewing, S. Triantafyllidou, C. White, S. Hayes, D. King, and J. Lu. A Comprehensive Evaluation of Monochloramine Disinfection on Water Quality, Legionella and Other Important Microorganisms in a Hospital.   WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 189: 116656, (2021).
Lytle, D., C. Formal, K. Cahalan, C. Muhlen, and S. Triantafyllidou. The Impact of Sampling Approach and Daily Water Usage on Lead Levels Measured at the Tap.   WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 197: 117071, (2021).

Tags: drinking-water, hospital, legionella, monochloramine
Organization: U.S. Environmental Protection Agency
Steep Headwater-Colluvial Channels, Day Creek, San Gabriel Mountains CA, US

Dataset includes UAV structure-from-motion derived point cloud of steep headwater channels, cliffs, and hillslopes in the headwaters of Day Creek, San Gabriel Mountains, CA (survey conducted in August, 2018). Model spans ~500 x 500 m and was georeferenced to airborne lidar dataset using iterative-closest-point-alignment.  Approximate point density of 225 pts/m2.

Bare-earth airborne lidar dataset was used as reference cloud (https://doi.org/10.5069/G9J38QPM). No vegetation filtering or clipping was performed on SfM derived point cloud. M3C2 cloud-to-cloud difference with default parameters yields 1-sigma cloud-to-cloud difference of 0.21 m and 2-sigma cloud-to-cloud difference of 0.78 m.

Accuracy is likely not sufficient for change detection analysis but is sufficient for morphometric analysis (channel geometries, sediment grain size, spatial patterns of soil/colluvial sediment cover). 

Organization: OpenTopography
(King County) Dockton Park Pier Mooring - Inner Quartermaster Harbor, Vashon Island

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Air temperature, Depth, Fractional saturation of oxygen in sea water, Mass concentration of chlorophyll in sea water, Mass concentration of oxygen in sea water, Net downward shortwave flux in air, Relative humidity, Sea water ph reported on total scale, Sea water salinity, Sea water temperature, Sea water turbidity, Surface air pressure, Surface downwelling photosynthetic radiative flux in air, Wind from direction, Wind speed, Precipitation accumulated

Tags: air temperature, air_temperature, british columbia, california, chlorophyll, depth, dissolved oxygen, fractional_saturation_of_oxygen_in_sea_water, marine, mass_concentration_of_chlorophyll_in_sea_water, mass_concentration_of_oxygen_in_sea_water, nanoos, net_downward_shortwave_flux_in_air, oregon, pacific northwest, precipitation_accumulated, relative_humidity, salinity, sea_water_ph_reported_on_total_scale, sea_water_salinity, sea_water_temperature, sea_water_turbidity, surface_air_pressure, surface_downwelling_photosynthetic_radiative_flux_in_air, washington, water temperature, wind_from_direction, wind_speed, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(APL-UW) LSG NPB-1 Profiling Buoy at Pt. Wells

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Air temperature, Dew point temperature, Fractional saturation of oxygen in sea water, Mass concentration of chlorophyll in sea water, Mass concentration of oxygen in sea water, Net downward shortwave flux in air, Relative humidity, Sea water salinity, Sea water sigma t, Sea water temperature, Surface air pressure, Surface downwelling photosynthetic radiative flux in air, Wind from direction, Wind speed, Wind speed of gust

Tags: air temperature, air_temperature, british columbia, california, chlorophyll, dew_point_temperature, dissolved oxygen, fractional_saturation_of_oxygen_in_sea_water, marine, mass_concentration_of_chlorophyll_in_sea_water, mass_concentration_of_oxygen_in_sea_water, nanoos, net_downward_shortwave_flux_in_air, oregon, pacific northwest, relative_humidity, salinity, sea_water_salinity, sea_water_sigma_t, sea_water_temperature, surface_air_pressure, surface_downwelling_photosynthetic_radiative_flux_in_air, washington, water temperature, wind_from_direction, wind_speed, wind_speed_of_gust, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(WADOH) Samish Bay site, mid bay

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Air temperature, Sea water electrical conductivity, Sea water salinity, Sea water temperature

Tags: air temperature, air_temperature, british columbia, california, chlorophyll, dissolved oxygen, marine, nanoos, oregon, pacific northwest, salinity, sea_water_electrical_conductivity, sea_water_salinity, sea_water_temperature, washington, water temperature, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
GLCFS - Lake Huron - Forecast - 2D

Aggregation of the 2D Forecast output for Lake Huron from GLCFS

Tags: depth, eastward_sea_water_velocity, forecast_period, forecast_reference_time, ice_concentration, ice_thickness, ice_u_veloctiy, ice_v_veloctiy, latitude, longitude, northward_sea_water_velocity, ocean_sigma_coordinate, sea_surface_elevation, time, wave_direction_to, wave_height, wave_period
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(PSI) PCSGA - Bay Center Port mooring, Willapa Bay

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: H1 redoxpot, Fractional saturation of oxygen in sea water, Mass concentration of oxygen in sea water, Sea water ph reported on total scale, Sea water salinity, Sea water temperature, Surface partial pressure of carbon dioxide in sea water, Omega aragonite, Dissolved inorganic carbon, Total alkalinity

Tags: air temperature, british columbia, california, chlorophyll, dissolved oxygen, dissolved_inorganic_carbon, fractional_saturation_of_oxygen_in_sea_water, h1_redoxpot, marine, mass_concentration_of_oxygen_in_sea_water, nanoos, omega_aragonite, oregon, pacific northwest, salinity, sea_water_ph_reported_on_total_scale, sea_water_salinity, sea_water_temperature, surface_partial_pressure_of_carbon_dioxide_in_sea_water, total_alkalinity, washington, water temperature, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(FannyBayOysters) Fanny Bay Oysters, Baynes Sound

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Sea water ph reported on total scale, Sea water salinity, Sea water temperature, Surface partial pressure of carbon dioxide in sea water, Omega aragonite, Dissolved inorganic carbon, Total alkalinity

Tags: air temperature, british columbia, california, chlorophyll, dissolved oxygen, dissolved_inorganic_carbon, marine, nanoos, omega_aragonite, oregon, pacific northwest, salinity, sea_water_ph_reported_on_total_scale, sea_water_salinity, sea_water_temperature, surface_partial_pressure_of_carbon_dioxide_in_sea_water, total_alkalinity, washington, water temperature, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
NERACOOS Gulf of Maine Ocean Array: Realtime Buoy Observations: B01 Western Maine Shelf: B01 MET Western Maine Shelf

Ocean observation data from the Northeastern Regional Association of Coastal &amp; Ocean Observing Systems (NERACOOS). The NERACOOS region includes the northeast United States and Canadian Maritime provinces, as part of the United States Integrated Ocean Observing System (IOOS).  These data are served by Unidata's Thematic Realtime Environmental Distributed Data Services (THREDDS) Data Server (TDS) in a variety of interoperable data services and output formats.

Tags: air_temperature, air_temperature data_quality, barometric_pressure, barometric_pressure data_quality, chlorophyll, conductivity, density, depth, latitude, longitude, neracoos, northeastern regional association of coastal and ocean observing systems (neracoos), ocean chemistry, ocean circulation, ocean currents, ocean optics, ocean pressure, ocean temperature, ocean waves, ocean winds, oceans, oxygen, salinity, salinity/density, sea level pressure, significant wave height, station_name, surface winds, time, time_created, time_modified, turbidity, use_wind, visibility_in_air, visibility_in_air data_quality, water temperature, wave period, wind_2_from_direction, wind_2_from_direction data_quality, wind_2_gust data_quality, wind_2_gust_1s data_quality, wind_2_min data_quality, wind_2_percent_good, wind_2_percent_good data_quality, wind_2_speed, wind_2_speed data_quality, wind_from_direction, wind_from_direction data_quality, wind_gust data_quality, wind_gust_1s data_quality, wind_min data_quality, wind_speed, wind_speed data_quality
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(CMOP) Desdemona Sands Light

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Air temperature, Relative humidity, Sea water salinity, Sea water temperature, Surface air pressure, Surface downwelling photosynthetic radiative flux in air, Wind from direction, Wind speed, Wind speed of gust

Tags: air temperature, air_temperature, british columbia, california, chlorophyll, dissolved oxygen, marine, nanoos, oregon, pacific northwest, relative_humidity, salinity, sea_water_salinity, sea_water_temperature, surface_air_pressure, surface_downwelling_photosynthetic_radiative_flux_in_air, washington, water temperature, wind_from_direction, wind_speed, wind_speed_of_gust, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(WhiskeyCrShelfish) PCSGA - Whiskey Creek Shellfish Hatchery, Netarts Bay

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Sea water ph reported on total scale, Sea water salinity, Sea water temperature, Surface partial pressure of carbon dioxide in sea water, Omega aragonite, Dissolved inorganic carbon, Total alkalinity

Tags: air temperature, british columbia, california, chlorophyll, dissolved oxygen, dissolved_inorganic_carbon, marine, nanoos, omega_aragonite, oregon, pacific northwest, salinity, sea_water_ph_reported_on_total_scale, sea_water_salinity, sea_water_temperature, surface_partial_pressure_of_carbon_dioxide_in_sea_water, total_alkalinity, washington, water temperature, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(WADOH) Skookum Inlet site, N shore near Deer Harbor

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Air temperature, Sea water electrical conductivity, Sea water salinity, Sea water temperature

Tags: air temperature, air_temperature, british columbia, california, chlorophyll, dissolved oxygen, marine, nanoos, oregon, pacific northwest, salinity, sea_water_electrical_conductivity, sea_water_salinity, sea_water_temperature, washington, water temperature, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(CMOP) Waste water outfall (City of Astoria)

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Sea water salinity, Sea water temperature

Tags: air temperature, british columbia, california, chlorophyll, dissolved oxygen, marine, nanoos, oregon, pacific northwest, salinity, sea_water_salinity, sea_water_temperature, washington, water temperature, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
(CMOP) SATURN-08 (LOBO Station)

IOOS Sensor Observation Service (SOS) Server for NANOOS, the Northwest Association of Networked Ocean Observing Systems (http://nanoos.org). Provides access to marine in-situ observation data for the US Pacific Northwest and lower British Columbia, from the NANOOS asset data store harvested and integrated by NVS (NANOOS Visualization System, http://nvs.nanoos.org). To avoid data duplication, currently only assets not otherwise available to the IOOS Catalog (http://catalog.ioos.us) are accessible through this SOS server; for example, assets from most federal agencies are not accessible on this server, but they are available on the NVS application. This NANOOS service is run by the 52North IOOS SOS server software, and complies with the IOOS SOS "Milestone 1" service profile (https://code.google.com/p/ioostech/wiki/SOSGuidelines).

This station provides the following variables: Fractional saturation of oxygen in sea water, Mass concentration of chlorophyll in sea water, Mass concentration of oxygen in sea water, Mole concentration of nitrate in sea water, Sea water pressure, Sea water salinity, Sea water temperature, Sea water turbidity, Cdom, Scattering coefficient

Tags: air temperature, british columbia, california, cdom, chlorophyll, dissolved oxygen, fractional_saturation_of_oxygen_in_sea_water, marine, mass_concentration_of_chlorophyll_in_sea_water, mass_concentration_of_oxygen_in_sea_water, mole_concentration_of_nitrate_in_sea_water, nanoos, oregon, pacific northwest, salinity, scattering_coefficient, sea_water_pressure, sea_water_salinity, sea_water_temperature, sea_water_turbidity, washington, water temperature, winds
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Jackson Lakes Water chemistry and genomic data 2106-2017

Data is provided for genomic , biogeochemical and weather data for Jackson Lakes in Pensacola Fl. from the fall of 2016 to the fall of 2017. 

This dataset is associated with the following publication:
Rogers, J., R. Devereux, J. James, S. George, and K. Forshay. Seasonal Distribution of Cyanobacteria in Three Urban Eutrophic Lakes Results from an Epidemic-like Response to Environmental Conditions..   CURRENT MICROBIOLOGY. Springer, New York, NY, USA, 78(6): 2298–2316, (2021).

Tags: clean-water-act
Organization: U.S. Environmental Protection Agency