AndreaBozzo/ceres-open-data-index huggingface dataset:
EK500 Water Column Sonar Data Collected During MF0316

The 2003 Joint U.S.-Canada Integrated Acoustic and Trawl Survey of Pacific Hake (Merluccius productus) (MF0316, EK500). Scientists from the Fishery Resource Analysis and Monitoring (FRAM) division at the NOAA Fisheries Northwest Fisheries Science Center (NWFSC) and the Pacific region of the Department of Fisheries and Oceans Canada (DFO) conducted the Joint 2003 Integrated Acoustic Survey (IAT) survey aboard the Canadian Coast Guard Ship (CCGS) W.E. Ricker, a stern trawler equipped for fisheries and oceanographic research.  Pacific Hake (Merluccius productus) aggregations were targeted along the continental shelf and upper slope of the entire survey area. 

Hake populations were surveyed along a series of parallel line transects that in general were oriented east-west, spaced at an interval of 10 nmi apart, and traversed sequentially in alternating directions; The survey began from south of Monterey, CA (36.1Â°N) to the Dixon Entrance area, Canada (51.4Â°N) between June 29 and Sep. 1. All transects up to the Dixon Entrance and along the west coast of Haida Gwaii were completed. Sea depth at the inshore end of individual transects was nominally 50 m. Offshore extent of individual transects was typically at a depth of 1,500 m.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, doc/noaa/nmfs, earth science, ecosystems, fisheries, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, national marine fisheries service, nesdis, noaa, north pacific ocean, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
EK60 Water Column Sonar Data Collected During DY1602

Gulf of Alaska Acoustic-Trawl Survey of Walleye Pollock (DY1602, EK60). The Midwater Assessment and Conservation Engineering (MACE) program of NOAA National Marine Fisheries Service (NMFS), Alaska Fisheries Science Center (AFSC) conducted acoustic-trawl (AT) stock assessment surveys in the Gulf of Alaska (GOA) during the winter of 2016 to estimate the distribution and abundance of walleye pollock (Gadus chalcogrammus). The Shumagin Islands survey was conducted 12-15 February and included Shumagin Trough, Stepovak Bay, Renshaw, Unga Strait, Korovin Strait, and West Nagai Strait. The Sanak Trough survey was conducted 15-16 February followed by the Morzhovoi Bay survey on 16 February. The vessel transited to Pavlov Bay 16-17 February and completed the Pavlov survey on February 17. The vessel transited to its home port 18-20 February. The survey was conducted aboard NOAA Ship Oscar Dyson, a 64 meter stern trawler equipped with acoustic and oceanographic instrumentation.

Tags: acoustic scattering, acoustic sounders, aquatic ecosystems, aquatic sciences, bathymetry, bathymetry/seafloor topography, benthic, biosphere, doc/noaa/nesdis/ncei, doc/noaa/nesdis/ngdc, doc/noaa/nmfs, earth science, ecosystems, fisheries, gulf of alaska, in situ/laboratory instruments, marine ecosystems, national centers for environmental information, national geophysical data center, national marine fisheries service, nesdis, noaa, ocean acoustics, oceans, pelagic, profilers/sounders, seafloor topography, u.s. department of commerce, vertical location, water column, water column mapping system, wcms
Organization: National Oceanic and Atmospheric Administration, Department of Commerce
Hospital Inpatient Discharges by DRG, U.S., FY2011

This table shows the low, high, and average percents of discharges related to a referenced DRG (diagnosis-related group) as a share of the total discharges from the top 100 common DRGs for hospitals in the United States. The source of data for this table is FY2011 hospital charges file provided by the Centers for Medicare and Medicaid Services (CMS).

Tags: hospital-inpatient-discharges-drg
Organization: State of Washington
WA-APCD Quality and Cost Summary Report: Hospital Quality

WA-APCD - Washington All-Payer Claims Database

The WA-APCD is the state’s most complete source of health care eligibility, medical claims, pharmacy claims, and dental claims insurance data. It contains claims from more than 50 data suppliers, spanning commercial, Medicaid, and Medicare managed care. The WA-APCD has historical claims data for five years (2013-2017), with ongoing refreshes scheduled quarterly. Workers' compensation data from the Washington Department of Labor & Industries will be added in fall 2018.

Download the attachment for the data dictionary and more information about WA-APCD and the data.

Organization: State of Washington
Hospital Inpatient Discharges by DRG, Washington, FY2011

This table shows the low, high, and average percents of discharges related to a referenced DRG (diagnosis-related group) as a share of the total discharges from the top 100 common DRGs.  The source of data for this table is FY2011 hospital charges file provided by the Centers for Medicare and Medicaid Services (CMS).

Tags: hospital-inpatient-discharges-drg
Organization: State of Washington
Hospital Inpatient Discharges by DRG, Northwest, FY2011

This table shows the low, high, and average percents of discharges related to a referenced DRG (diagnosis-related group) as a share of the total discharges from the top 100 common DRGs for hospitals in the Northwest region (Alaska, Idaho, Oregon, and Washington). The source of data for this table is FY2011 hospital charges file provided by the Centers for Medicare and Medicaid Services (CMS).

Tags: hospital-inpatient-discharges-drg
Organization: State of Washington
WA-APCD Quality and Cost Summary Report: ACH Quality

WA-APCD - Washington All-Payer Claims Database

The WA-APCD is the state’s most complete source of health care eligibility, medical claims, pharmacy claims, and dental claims insurance data. It contains claims from more than 50 data suppliers, spanning commercial, Medicaid, and Medicare managed care. The WA-APCD has historical claims data for five years (2013-2017), with ongoing refreshes scheduled quarterly. Workers' compensation data from the Washington Department of Labor & Industries will be added in fall 2018.

Download the attachment for the data dictionary and more information about WA-APCD and the data.

Organization: State of Washington
WA-APCD Quality and Cost Summary Report: Practice Quality

WA-APCD - Washington All-Payer Claims Database

The WA-APCD is the state’s most complete source of health care eligibility, medical claims, pharmacy claims, and dental claims insurance data. It contains claims from more than 50 data suppliers, spanning commercial, Medicaid, and Medicare managed care. The WA-APCD has historical claims data for five years (2013-2017), with ongoing refreshes scheduled quarterly. Workers' compensation data from the Washington Department of Labor & Industries will be added in fall 2018.

Download the attachment for the data dictionary and more information about WA-APCD and the data.

Organization: State of Washington
WA-APCD Quality and Cost Summary Report: County Cost

WA-APCD - Washington All-Payer Claims Database

The WA-APCD is the state’s most complete source of health care eligibility, medical claims, pharmacy claims, and dental claims insurance data. It contains claims from more than 50 data suppliers, spanning commercial, Medicaid, and Medicare managed care. The WA-APCD has historical claims data for five years (2013-2017), with ongoing refreshes scheduled quarterly. Workers' compensation data from the Washington Department of Labor & Industries will be added in fall 2018.

Download the attachment for the data dictionary and more information about WA-APCD and the data.

Organization: State of Washington
LACERS Target Asset Allocation

The Board’s Asset Allocation Policy provides for diversification of assets in an effort to maximize the investment return of the System consistent with market conditions.  Asset allocation modeling identifies the asset classes the System will utilize and the percentage of the total plan assets that each class represents.  Due to the fluctuation of market values, positioning within a specified range is acceptable and constitutes compliance with the policy.  It is anticipated that an extended period of time may be required to fully implement the Asset Allocation Policy and that periodic revisions will occur.  The Board monitors and assesses the actual asset allocation versus policy and will re-balance as appropriate.  The Board reviews the Asset Allocation Policy strategically approximately every three years and on a tactical basis when appropriate.

Organization: City of Los Angeles
American Rescue Plan Proposed 2021-22 Budget

The 2021-22 Proposed Budget includes $677 million of fiscal recovery funds from the American Rescue Plan (ARP). This amount represents the second tranche allocation out of a total City allotment of $1.354 billion. ARP expenditures relate to current year funding as shared in this dataset.

This dataset reflects one point in time, and will not undergo regular updates.

Organization: City of Los Angeles
Port of Los Angeles - Emissions Reduction Percentage 2005 - 2012

This table reports emissions from Port operations in oxides of nitrogen (NOx), Oxides of Sulfur (SOx), and Diesel Particulate Matter (DPM); emissions impact health and quality of life in the Port-adjacent communities. Source: POLA Annual emissions inventory (for Port reductions)
Published historical data.  Live data is published online via: https://caap.airsis.com/HistoricalDetail.aspx

Organization: City of Los Angeles
Patient Characteristics Survey (PCS): 2017

The number of persons described by survey year (2017)
reported in OMH Region‐specific totals (Region of Provider)
and three demographic characteristics of the client served
during the week of the survey: sex (Male, Female, and Unknown), Transgender (No, Not Transgender; Yes, Transgender and Unknown), age (below 17 (Child), 18 and above(Adult) and unknown age) and race (White only, Black Only, Multi‐racial, Other and Unknown race) and ethnicity (Non‐Hispanic, Hispanic, Client Did Not Answer and Unknown). Persons with Hispanic ethnicity are grouped as “Hispanic,” regardless of race or races reported.

Organization: State of New York
911 Master PSAP Registry

Updated as of February 26, 2019. The FCC’s 911 Master PSAP Registry (PSAP Registry) lists Public Safety Answering Points (PSAPs) by an FCC assigned identification number (PSAP ID), PSAP name, state, county, city, and provides information on any type of record change and the reason for updating the record. The Commission updates the Registry periodically as it receives additional information. For further information concerning the FCC's PSAP Registry, or to notify the Commission of changes to the PSAP Registry, contact Kim Anderson and John A. Evanoff, Public Safety and Homeland Security Bureau at fccpsapregistryupdate@fcc.gov.

Tags: psap
Organization: Federal Communications Commission
Post Auction Coverage Baseline 2.0

FINAL TELEVISION CHANNEL ASSIGNMENT INFORMATION RELATED TO INCENTIVE AUCTION REPACKING. NOTE: This file provides new baseline coverage and population data for all U.S. full power and Class A stations on their post-auction channel. NOTE: DTV TV stations use the transmit coordinates for each facility ID. DTS TV stations will have a single row. These results are based on the 20151020UCM Database, 2015Oct_132Settings.xml study template, and TVStudy version 1.3.2 (patched).

Tags: incentive-auctions
Organization: Federal Communications Commission
Linked Station Neighbors

This file that is a subset of the Linked-Station Set file. This file specifies, for each U.S. or impeding Canadian station part of a linked station set, the set of stations in their linked-station set with which they need to coordinate.  Stations with which the transitioning station must coordinate are upstream neighbors (the transitioning station’s post-auction channel interferes with the upstream neighbors’ pre-auction channel); stations that must coordinate with the transitioning station are downstream neighbors (the transitioning station’s pre-auction channel interferes with the downstream neighbors’ post-auction channel). •	Contains two records for each U.S. and impeding Canadian station that is in a linked-station set, one record listing its upstream neighbors and another record listing its downstream neighbors

Tags: incentive-auctions
Organization: Federal Communications Commission
Data for Martin et al_Zebrafish irritant responses to wildland fire-related biomass smoke are influenced by fuel type, combustion phase, and byproduct chemistry

This data set contains the values used to generate the tables and figures in the manuscript. 

This dataset is associated with the following publication:
Martin, W.K., S. Padilla, Y. Kim, M. Hays, D. Hunter, M. Hazari, D. DeMarini, I. Gilmour, and A. Farraj. Zebrafish irritant responses to wildland fire-related biomass smoke are influenced by fuel type, combustion phase, and byproduct chemistry.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH - PART A:  CURRENT ISSUES. Taylor & Francis, Inc., Philadelphia, PA, USA, 84(16): 674-688, (2021).

Tags: air-pollution, biomass, chemistry, combustion-phase, irritant-responses, locomotor-assay, particulate-matter, sources, wildland-fire, zebrafish
Organization: U.S. Environmental Protection Agency
Gilbert_Extrathyroidal MOA and DNT

This file contains summary data of thyroid hormones in serum and brain in rat dams and their pups following maternal exposure to a perflorinated substance, PFHxS and an antimicrobial, Triclosan. Gene expression in thyroid glands and liver and brain were investigated. Anatomical and bahavioral indices of developmental neurotoxicity were assessed. Result so fall of these inquiries are summarized in these datasets. 

This dataset is associated with the following publication:
Gilbert, M.E., K. OShaughnessy, S. Thomas, C. Riutta, C. Wood, A. Smith, W. Oshiro, J. Ford, A. Hotchkiss, I. Hassan, and R.L. Ford. Thyroid Disruptors: Extrathyroidal Sites of Chemical Action and Neurodevelopmental Outcome-An Examination Using Triclosan and Perfluorohexane Sulfonate.   TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA,  183(6): 195-213, (2021).

Tags: development-neurotoxicity, developmental-hypothyroidism, thyroid-disrupting-chemicals
Organization: U.S. Environmental Protection Agency
Meta-Analysis and modeling of vegetated filter removal of sediment using global dataset

Data on vegetated filter strips, sediment loading into and out of riparian corridors/buffers (VFS), removal efficiency of sediment, meta-analysis of removal efficiencies, dimensional analysis of predictor variables, and regression modeling of VFS removal efficiencies. 

This dataset is associated with the following publication:
Ramesh, R., L. Kalin, M. Hantush, and A. Chaudhary. A secondary assessment of sediment trapping effectiveness by vegetated buffers.   ECOLOGICAL ENGINEERING. Elsevier Science Ltd, New York, NY, USA, 159: 106094, (2021).

Tags: bmp, filter-strip, sediment, vegetated-buffer
Organization: U.S. Environmental Protection Agency
High-throughput transcriptomics platform for screening hepatotoxicants-NCBI/GEO GSE152128

We introduce a new high-throughput transcriptomics (HTTr) platform comprised of a collagen sandwich primary rat hepatocyte culture and the TempO-Seq assay for screening and prioritizing potential hepatotoxicants. We selected 14 chemicals based on their risk of drug-induced liver injury (DILI) and tested them in hepatocytes at two treatment concentrations. HTTr data was generated using the TempO-Seq whole transcriptome and S1500+ assays. The HTTr platform exhibited high reproducibility between technical replicates (r>0.9) but biological replication was greater for TempO-Seq S1500+ (r>0.85) than for the whole transcriptome (r>0.7). Reproducibility between biological replicates was dependent on the strength of transcriptional effects induced by a chemical treatment. Despite targeting a smaller number of genes, the S1500+ assay clustered chemical treatments and produced gene set enrichment analysis (GSEA) scores comparable to those of the whole transcriptome. Connectivity mapping showed a high-level of reproducibility between TempO-Seq data and Affymetrix GeneChip data from the Open TG-GATES project with high concordance between the S1500+ gene set and whole transcriptome. Taken together, our results provide guidance on selecting the number of technical and biological replicates and support the use of TempO-Seq S1500+ assay for a high-throughput platform for screening hepatotoxicants.
FASTQ files and read counts data have been deposited in the National Center for Biotechnology Information Gene Expression Omnibus (GEO) (GSE152128). 

This dataset is associated with the following publication:
Lee, F., I. Shah, Y.T. Soong, J. Xing, I.C. Ng, F. Tasnim, and H. Yu. Reproducibility and Robustness of High-Throughput S1500+ Transcriptomics on Primary Rat Hepatocytes for Chemical-Induced Hepatotoxicity Assessment.   Current Research in Toxicology. Elsevier B.V., Amsterdam,  NETHERLANDS, 2: 282-295, (2021).

Tags: collagen-sandwich, connectivity-mapping, gene-set-enrichment-analysis, hallmark-gene-set-collection, hepatotoxicity, high-throughput-transcriptomics, rat-hepatocytes
Organization: U.S. Environmental Protection Agency
QTOF Analysis

QTOF analysis data. 

This dataset is associated with the following publication:
Verma , S., B. Mezgebe , E. Sahle-Demessie, and M. Nadagouda. Photooxidative Decomposition and Defluorination of Perfluorooctanoic Acid (PFOA) Using an Innovative Technology of UV-vis/ZnxCu1-xFe2O4/Oxalic Acid.   CHEMOSPHERE. Elsevier Science Ltd, New York, NY, USA, 280: 130660, (2021).

Tags: magnetic-zn-ferrite-nanoparticles, per-and-polyfluoroalkyl-substances-pfas, photocatalysis
Organization: U.S. Environmental Protection Agency
Archive: COVID-19 Vaccination Demographic Trends by Report Date, National

This data dictionary provides information about archived demographic trend data for people receiving COVID-19 vaccinations in the United States at the national level. Data represents all vaccine partners including jurisdictional partner clinics, retail pharmacies, long-term care facilities, dialysis centers, Federal Emergency Management Agency and Health Resources and Services Administration partner sites, and federal entity facilities. 

These data have been archived to provide historical demographic trend data for COVID-19 vaccine recipients prior to CDC converting the Vaccination Demographic Trends site to using data based on the date of vaccine administration. Previously, the Vaccination Demographic Trends site presented trend data by the date the vaccination was reported to CDC.

Tags: administration, coronavirus, covid-19, immunization, izdl, report-date, vaccination
Organization: U.S. Department of Health & Human Services
WA-APCD Quality and Cost Summary Report: Facility Cost

WA-APCD - Washington All Payers Claims Database

The WA-APCD is the state’s most complete source of health care eligibility, medical claims, pharmacy claims, and dental claims insurance data. It contains claims from more than 50 data suppliers, spanning commercial, Medicaid, and Medicare managed care. The WA-APCD has historical claims data for five years (2013-2017), with ongoing refreshes scheduled quarterly. Workers' compensation data from the Washington Department of Labor & Industries will be added in fall 2018.

Download the attachment for the data dictionary and more information about WA-APCD and the data.

Organization: State of Washington
Dataset for Quantitative microbial risk assessment of antimicrobial resistant and susceptible Staphylococcus aureus in reclaimed wastewaters

Includes annual probabilities of colonization (Pcol), probabilities of skin and blood stream (bs) infection (Pinf), and associated disability adjusted life years (DALY) for exposure to methicillin-susceptible and -resistant Staphylococcus aureus (MSSA/MRSA) in reclaimed greywater (GW) and wastewater (WW) as described in the article's text.  A data dictionary is included in the metadata tab of the workbook. 

This dataset is associated with the following publication:
Schoen, M., M. Jahne, J. Garland, L. Ramirez, A. Lopatkin, and K. Hamilton. Quantitative microbial risk assessment of antimicrobial resistant and susceptible Staphylococcus aureus in reclaimed wastewaters.   ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 55(20): 13413-14330, (2021).

Tags: antimicrobial-resistance, graywater, mrsa, qmra, staphylococcus-aureus, wastewater, water-reuse
Organization: U.S. Environmental Protection Agency
Dataset for ORD-038667: A Gene Expression Biomarker Predicts Heat Shock Factor 1 (HSF1) Activation in a Gene Expression Compendium

Gene Expression Omnibus and ArrayExpress identification numbers of studies used in the analysis. 

This dataset is associated with the following publication:
Cervantes, P., and C. Corton. A Gene Expression Biomarker Predicts Heat Shock Factor 1 Activation in a Gene Expression Compendium.   CHEMICAL RESEARCH IN TOXICOLOGY. American Chemical Society, Washington, DC, USA, 34(7): 1721-1737, (2021).

Tags: biomarker, heat-shock-factor-1, httr, transcript-profiling
Organization: U.S. Environmental Protection Agency
RARE_1718_NTM_HPC

The dataset has total chlorine concentration, monochloramine concentration, HPC CFU/500mL, NTM CFU/500mL, and M. avium, M. intracellular, and M. abscessus GU/500ML and THM4 and HAA5/HAA9 data. 

This dataset is associated with the following publication:
Pfaller, S., D. King, J. Mistry, J. Pressman, D. Wahman, G. Abulikemu, and M. Donohue. Chloramine Concentrations within Distribution Systems and Their Effect on Heterotrophic Bacteria, Mycobacterial Species, and Disinfection Byproducts.   WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 205: 117689, (2021).

Tags: drinking-water-distribution-system, haloacetic-acid, hetertrophic-bacteria, mycobacterium-abscessus, mycobacterium-avium, nontuberculous-mycobacteria-ntm, trihalomethanes
Organization: U.S. Environmental Protection Agency
Headwater Wetland Hydrologic Modeling

These are input data to the Soil and Water Assessment Tool (SWAT) developed for a watershed and Artificial Neural Network (ANN) constructed as a simulation model for the wetland as well as outputs from the two models that were used to construct all figures in the manuscript. The SWAT model simulated surface runoff inflow and upwelling groundwater discharge to a headwater-slope wetland in Baldwin County, Alabama and ANN simulated outflow from the wetland to a stream. 

This dataset is associated with the following publication:
Remesh, R., L. Kalin, M.M. Hantush, M. Rezaeinzadeh, and C.J. Anderson. Challenges Calibrating Hydrology for Groundwater-Fed Wetlands: a Headwater Wetland Case Study.   ENVIRONMENTAL MODELING AND ASSESSMENT. Baltzer Science Publishers BV, Bussum,  NETHERLANDS, 25: 355-371, (2020).

Tags: artificial-neural-networks, baseflow, groundwater, headwater-slope-wetland, model, swat, wetland
Organization: U.S. Environmental Protection Agency