AndreaBozzo/ceres-open-data-index huggingface dataset:
Agricultural Research Word Vectors

<p>This model was originally trained for use in a recommendation system to the Ag Data Commons that will automatically link viewers of one dataset to other directly relevant datasets and research papers that they may be interested in. It was also used to determine the similarities and differences between projects within ARS’ National Programs and create a visualization layer to allow leaders to explore and manage their programs easily.</p>
<p>This model was generated using the Word2Vec model, starting with a set of <a href="https://drive.google.com/file/d/0B7XkCwpI5KDYNlNUTTlSS21pQmM/edit">word vectors trained on Google News articles</a>, and further training it on the titles+abstracts from <a href="https://pubag.nal.usda.gov/apidocs">PubAg</a> and the titles+descriptions from <a href="https://data.nal.usda.gov/data.json">Ag Data Commons</a>. This model was trained using a vector length of 300 and the Continuous Bag of Words version of the algorithm with negative sampling.</p>
<p>This word vector model could be used for any Natural-Language Processing applications involving text with a large amount of agricultural research vocabulary. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Agricultural Word Vectors.</p> <p>File Name: AgWordVectors-300.zip</p><p>Resource Description: Word vectors trained on the full titles/abstracts in PubAg and titles/abstracts in Ag Data Commons. (Part A)</p></li><br><li><p>Resource Title: Agricultural Word Vectors Trainables.</p> <p>File Name: AgWordVectors-300.model<em>.trainables.syn1neg.zip</em></p><p><em>Resource Description: Word vectors trained on the full titles/abstracts in PubAg and titles/abstracts in Ag Data Commons. (Part B)</em></p></li><em><br></em><li><em><p>Resource Title: Agricultural Word Vector Model.</p> </em><p><em>File Name: AgWordVectors-300.model</em>.wv_.vectors.zip</p><p>Resource Description: Word vectors trained on the full titles/abstracts in PubAg and titles/abstracts in Ag Data Commons. (Part C)</p></li></ul><p></p>

Tags: ars, data-gov, machine-learning, natural-language-processing
Organization: Department of Agriculture
Data from: Improving mass rearing techniques for <i>Floracarus perrepae</i>, a biological control agent for Old World Climbing Fern (<i>Lygodium microphyllum</i>), for releases

<p dir="ltr">In late 2021, relatively simple adjustments made to plant and agent mass rearing protocols produced exponential increases in <i>F. perrepae</i> colony productivity. This increase is attributed to several key changes in colony maintenance that optimized the host-parasite population ratio. We developed a systematic method involving a weekly plant readiness criterion and a predefined sequence of stages to select plants for release, which ensures galls are correctly aged to maximize mite numbers.</p><p><br></p><p dir="ltr">This project was partially funded by the USDA, through the Comprehensive Everglades Restoration Plan (CERP) (USDA agreement 58-6032-1-001) co-directed by the South Florida Water Management District and U.S. Army Corps of Engineers, and through Southwest Florida Water Management District (USDA agreement 58-6032-3-003).</p><p dir="ltr">Version 2 of dataset updated the title of the dataset, added an additional author, corrected the temporal start and end dates, and added additional data files.</p>

Tags: ars, biological-control, data-gov, floracarus-perrepae, lygodium-microphyllum, mass-rearing
Organization: Department of Agriculture
Angus Sequence Data: Animal 20786

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 20786.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WB04_i5-515_i7-112_S16_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WB04_i5-515_i7-112_S16_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB04-i5-515-i7-112_S152_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB04-i5-515-i7-112_S152_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB04-i5-515-i7-112_S16_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB04-i5-515-i7-112_S16_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB04-i5-515-i7-112_S16_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB04-i5-515-i7-112_S16_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB04_i5-515_i7-112_S16_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB04_i5-515_i7-112_S16_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB04_i5-515_i7-112_S16_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB04_i5-515_i7-112_S16_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB04_i5-515_i7-112_S371_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB04_i5-515_i7-112_S371_L002_R2_001.fastq.gz</li></ul><p><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture
Angus Sequence Data: Animal 44993

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 44993.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WC04_i5-515_i7-124_S28_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WC04_i5-515_i7-124_S28_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WC04-i5-515-i7-124_S164_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WC04-i5-515-i7-124_S164_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WC04-i5-515-i7-124_S28_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WC04-i5-515-i7-124_S28_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WC04-i5-515-i7-124_S28_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WC04-i5-515-i7-124_S28_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WC04_i5-515_i7-124_S28_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WC04_i5-515_i7-124_S28_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WC04_i5-515_i7-124_S28_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WC04_i5-515_i7-124_S28_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WC04_i5-515_i7-124_S383_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WC04_i5-515_i7-124_S383_L002_R2_001.fastq.gz</li></ul><p dir="ltr"><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture
Angus Sequence Data: Animal 16378

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 16378.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a> . In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">Resource Title: Animal 16378 Sequence Data - SCINet.</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WA07_i5-515_i7-103_S7_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WA07_i5-515_i7-103_S7_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S143_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S143_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S7_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA07-i5-515-i7-103_S7_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA07-i5-515-i7-103_S7_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA07-i5-515-i7-103_S7_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA07_i5-515_i7-103_S7_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA07_i5-515_i7-103_S362_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA07_i5-515_i7-103_S362_L002_R2_001.fastq.gz</li></ul><p><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture
Angus Sequence Data: Animal Dark_Knight

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program does not have germplasm for this animal.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WA01_i5-515_i7-97_S1_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WA01_i5-515_i7-97_S1_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA01-i5-515-i7-97_S137_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA01-i5-515-i7-97_S137_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA01-i5-515-i7-97_S1_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA01-i5-515-i7-97_S1_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA01-i5-515-i7-97_S1_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA01-i5-515-i7-97_S1_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA01_i5-515_i7-97_S1_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA01_i5-515_i7-97_S1_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA01_i5-515_i7-97_S1_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA01_i5-515_i7-97_S1_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA01_i5-515_i7-97_S356_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA01_i5-515_i7-97_S356_L002_R2_001.fastq.gz</li></ul><p><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture
Angus Sequence Data: Animal 20783

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 20783.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WB03_i5-515_i7-111_S15_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WB03_i5-515_i7-111_S15_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB03-i5-515-i7-111_S151_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB03-i5-515-i7-111_S151_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB03-i5-515-i7-111_S15_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB03-i5-515-i7-111_S15_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB03-i5-515-i7-111_S15_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB03-i5-515-i7-111_S15_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB03_i5-515_i7-111_S15_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB03_i5-515_i7-111_S15_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB03_i5-515_i7-111_S15_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB03_i5-515_i7-111_S15_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB03_i5-515_i7-111_S370_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB03_i5-515_i7-111_S370_L002_R2_001.fastq.gz</li></ul><p dir="ltr"><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture
Angus Sequence Data: Animal 44462

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 44462.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WB11_i5-515_i7-119_S23_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WB11_i5-515_i7-119_S23_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB11-i5-515-i7-119_S159_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB11-i5-515-i7-119_S159_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB11-i5-515-i7-119_S23_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB11-i5-515-i7-119_S23_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB11-i5-515-i7-119_S23_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB11-i5-515-i7-119_S23_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB11_i5-515_i7-119_S23_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB11_i5-515_i7-119_S23_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB11_i5-515_i7-119_S23_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB11_i5-515_i7-119_S23_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB11_i5-515_i7-119_S378_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB11_i5-515_i7-119_S378_L002_R2_001.fastq.gz</li></ul><p dir="ltr"><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture
Angus Sequence Data: Animal 20735

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 20735.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WB01_i5-515_i7-109_S13_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WB01_i5-515_i7-109_S13_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S13_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S13_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S149_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S149_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB01-i5-515-i7-109_S13_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB01-i5-515-i7-109_S13_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB01_i5-515_i7-109_S368_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB01_i5-515_i7-109_S368_L002_R2_001.fastq.gz</li></ul><p><br></p><p><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture
Angus Sequence Data: Animal 44542

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 44542.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WB12_i5-515_i7-120_S24_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WB12_i5-515_i7-120_S24_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB12-i5-515-i7-120_S160_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB12-i5-515-i7-120_S160_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB12-i5-515-i7-120_S24_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WB12-i5-515-i7-120_S24_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB12-i5-515-i7-120_S24_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WB12-i5-515-i7-120_S24_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB12_i5-515_i7-120_S24_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB12_i5-515_i7-120_S24_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB12_i5-515_i7-120_S24_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WB12_i5-515_i7-120_S24_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB12_i5-515_i7-120_S379_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WB12_i5-515_i7-120_S379_L002_R2_001.fastq.gz</li></ul><p dir="ltr"><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture
Angus Sequence Data: Animal 44718

<p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 44718.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a> . In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WC01_i5-515_i7-121_S25_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WC01_i5-515_i7-121_S25_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WC01-i5-515-i7-121_S161_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WC01-i5-515-i7-121_S161_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WC01-i5-515-i7-121_S25_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WC01-i5-515-i7-121_S25_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WC01-i5-515-i7-121_S25_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WC01-i5-515-i7-121_S25_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WC01_i5-515_i7-121_S25_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WC01_i5-515_i7-121_S25_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WC01_i5-515_i7-121_S25_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WC01_i5-515_i7-121_S25_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WC01_i5-515_i7-121_S380_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WC01_i5-515_i7-121_S380_L002_R2_001.fastq.gz</li></ul><p dir="ltr"><br></p>

Tags: animals, ars, cryopreservation, data-gov, dna-sequence, genetic-diversity, germplasm, grin, np101
Organization: Department of Agriculture