Patent ID: 9589102
Date: 2017-03-07
CPC Classifications: G16B

Claim:
1. A system for providing information about a cluster of child spliced sequences obtained from a parent base sequence comprising a server for receiving a query sequence and a database containing base sequences, wherein said server comprises: a subsystem for recording a plurality of spliced sequences, wherein each spliced sequence is a query sequence; a subsystem for comparing a spliced edit distance between each query sequence and the parent base sequence read from a database with a predetermined maximum acceptable value; a subsystem for selecting spliced base sequences of which the spliced edit distance between each query sequence and the parent base sequence is not more than said maximum acceptable value to generate a first cluster of child spliced sequences and recording said first cluster in a storage subsystem; a subsystem for generating a second cluster of child spliced sequences from said first cluster and storing said second cluster; and a subsystem for sending said second cluster over a network, wherein the second cluster of child spliced sequences comprises spliced pairs between each query sequence and the base sequence with a defined splice length for the base sequence and applying spliced alignment between each query sequence and the first cluster as aligned with the base sequence, wherein the degree of spliced alignment between each query sequence and the base sequence is determined by the number of spliced pairs of the second cluster at the defined splice length.