Patent ID: 11862298
Assignee: VERILY LIFE SCIENCES LLC
Field: Computer technology (Electrical engineering)
Classification: CPC G | IPC G

Claim 6:
7. A non-transitory machine readable storage medium having instructions stored thereon that when executed by one or more processors cause the one or more processors to perform a method comprising:
obtaining a digital representation of a peptide sequence, the digital representation including a plurality of container elements, each container element of the plurality of container elements representing an amino acid residue;
encoding, using a bidirectional recurrent neural network of long short term memory cells, each container element as an encoded vector;
decoding, using a fully-connected network, each of the encoded vectors into a theoretical output spectrum; and
recording the theoretical output spectrum for each of the encoded vectors as a total spectrum into a memory,
wherein the total spectrum is recorded as (i) a multi-dimensional data set of at least mass and intensity values for each fragment ion in the total spectrum, or (ii) a one-dimensional data set of intensity values for each fragment ion in the total spectrum.