Patent ID: 11862298
Assignee: VERILY LIFE SCIENCES LLC
Field: Computer technology (Electrical engineering)
Classification: CPC G | IPC G

Claim 12:
13. A system comprising:
one or more processors and non-transitory machine readable storage medium;
program instructions to obtain a digital representation of a peptide sequence, the digital representation including a plurality of container elements, each container element of the plurality of container elements representing an amino acid residue;
program instructions to encode, using a bidirectional recurrent neural network of long short term memory cells, each container element as an encoded vector;
program instructions to decoding, using a fully-connected network, each of the encoded vectors into a theoretical output spectrum; and
program instructions to record the theoretical output spectrum for each of the encoded vectors as a total spectrum into a memory,
wherein the total spectrum is recorded as (i) a multi-dimensional data set of at least mass and intensity values for each fragment ion in the total spectrum, or (ii) a one-dimensional data set of intensity values for each fragment ion in the total spectrum, and
wherein the program instructions are stored on the non-transitory machine readable storage medium for execution by the one or more processors.