Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer") - Inference
- Notebooks
- Google Colab
- Kaggle
Christina Theodoris commited on
Commit ·
31bf641
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Parent(s): 42dbf0a
edit docs to remove backend isp functions
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docs/source/geneformer.in_silico_perturber.rst
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:exclude-members: valid_option_dict, validate_options, apply_additional_filters, isp_perturb_all, isp_perturb_set, update_perturbation_dictionary
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:exclude-members: valid_option_dict, validate_options, apply_additional_filters, isp_perturb_all, isp_perturb_set, , isp_perturb_all_special, isp_perturb_set_special, update_perturbation_dictionary
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