diff --git "a/config.json" "b/config.json" new file mode 100644--- /dev/null +++ "b/config.json" @@ -0,0 +1,3852 @@ +{ + "_name_or_path": "michiyasunaga/BioLinkBERT-base", + "architectures": [ + "BertForTokenClassification" + ], + "attention_probs_dropout_prob": 0.1, + "classifier_dropout": null, + "gradient_checkpointing": false, + "hidden_act": "gelu", + "hidden_dropout_prob": 0.1, + "hidden_size": 768, + "id2label": { + "0": "an_em_COREF:None)", + "1": "an_em_COREF:coref)", + "2": "an_em_RE:None)", + "3": "an_em_RE:frag)", + "4": "an_em_RE:Part-of)", + "5": "an_em_ner:O)", + "6": "an_em_ner:B-Cell)", + "7": "an_em_ner:B-Multi-tissue_structure)", + "8": "an_em_ner:I-Cell)", + "9": "an_em_ner:B-Organ)", + "10": "an_em_ner:B-Pathological_formation)", + "11": "an_em_ner:I-Multi-tissue_structure)", + "12": "an_em_ner:B-Organism_substance)", + "13": "an_em_ner:I-Pathological_formation)", + "14": "an_em_ner:B-Cellular_component)", + "15": "an_em_ner:B-Tissue)", + "16": 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"bionlp_st_2013_ge_ED:I-Ubiquitination)", + "370": "bionlp_st_2013_ge_ED:I-Protein_catabolism)", + "371": "bionlp_st_2013_ge_ner:O)", + "372": "bionlp_st_2013_ge_ner:B-Protein)", + "373": "bionlp_st_2013_ge_ner:B-Entity)", + "374": "bionlp_st_2013_ge_ner:I-Protein)", + "375": "bionlp_st_2013_ge_ner:I-Entity)", + "376": "bionlp_st_2013_gro_EAE:None)", + "377": "bionlp_st_2013_gro_EAE:hasPatient)", + "378": "bionlp_st_2013_gro_EAE:hasAgent)", + "379": "bionlp_st_2013_gro_EAE:hasPatient2)", + "380": "bionlp_st_2013_gro_EAE:hasPatient3)", + "381": "bionlp_st_2013_gro_EAE:hasAgent2)", + "382": "bionlp_st_2013_gro_EAE:hasPatient4)", + "383": "bionlp_st_2013_gro_EAE:hasPatient5)", + "384": "bionlp_st_2013_gro_EAE:hasAgent|hasPatient)", + "385": "bionlp_st_2013_gro_ED:O)", + "386": "bionlp_st_2013_gro_ED:B-PositiveRegulation)", + "387": "bionlp_st_2013_gro_ED:B-GeneExpression)", + "388": "bionlp_st_2013_gro_ED:B-RegulatoryProcess)", + "389": "bionlp_st_2013_gro_ED:B-BindingToProtein)", + "390": "bionlp_st_2013_gro_ED:B-NegativeRegulation)", + "391": "bionlp_st_2013_gro_ED:B-Disease)", + "392": "bionlp_st_2013_gro_ED:B-Transcription)", + "393": "bionlp_st_2013_gro_ED:I-Disease)", + "394": "bionlp_st_2013_gro_ED:B-Increase)", + "395": "bionlp_st_2013_gro_ED:B-SignalingPathway)", + "396": "bionlp_st_2013_gro_ED:B-Mutation)", + "397": "bionlp_st_2013_gro_ED:B-Localization)", + "398": "bionlp_st_2013_gro_ED:B-BindingOfProteinToDNA)", + "399": "bionlp_st_2013_gro_ED:B-Phosphorylation)", + "400": "bionlp_st_2013_gro_ED:B-Decrease)", + "401": "bionlp_st_2013_gro_ED:I-SignalingPathway)", + "402": "bionlp_st_2013_gro_ED:B-CellDeath)", + "403": "bionlp_st_2013_gro_ED:B-Transport)", + "404": "bionlp_st_2013_gro_ED:B-CellularProcess)", + "405": "bionlp_st_2013_gro_ED:B-DevelopmentalProcess)", + "406": "bionlp_st_2013_gro_ED:B-PositiveRegulationOfGeneExpression)", + "407": "bionlp_st_2013_gro_ED:B-ResponseProcess)", + "408": "bionlp_st_2013_gro_ED:B-Binding)", + "409": "bionlp_st_2013_gro_ED:B-CellDifferentiation)", + "410": "bionlp_st_2013_gro_ED:I-GeneExpression)", + "411": "bionlp_st_2013_gro_ED:B-TranscriptionOfGene)", + "412": "bionlp_st_2013_gro_ED:I-CellularProcess)", + "413": "bionlp_st_2013_gro_ED:I-CellDeath)", + "414": "bionlp_st_2013_gro_ED:B-ProteinCatabolism)", + "415": "bionlp_st_2013_gro_ED:B-CellGrowth)", + "416": "bionlp_st_2013_gro_ED:B-MetabolicPathway)", + "417": "bionlp_st_2013_gro_ED:I-CellDifferentiation)", + "418": "bionlp_st_2013_gro_ED:B-CellularDevelopmentalProcess)", + "419": "bionlp_st_2013_gro_ED:I-ResponseProcess)", + "420": "bionlp_st_2013_gro_ED:B-BindingToRNA)", + "421": "bionlp_st_2013_gro_ED:B-RNASplicing)", + "422": "bionlp_st_2013_gro_ED:B-NegativeRegulationOfTranscription)", + "423": "bionlp_st_2013_gro_ED:I-NegativeRegulationOfTranscription)", + "424": "bionlp_st_2013_gro_ED:I-DevelopmentalProcess)", + "425": "bionlp_st_2013_gro_ED:B-Splicing)", + "426": "bionlp_st_2013_gro_ED:B-ProteinTargeting)", + "427": "bionlp_st_2013_gro_ED:B-Heterodimerization)", + "428": "bionlp_st_2013_gro_ED:B-TranscriptionInitiation)", + "429": "bionlp_st_2013_gro_ED:B-CellCycle)", + "430": "bionlp_st_2013_gro_ED:B-CellularComponentOrganizationAndBiogenesis)", + "431": "bionlp_st_2013_gro_ED:B-Maintenance)", + "432": "bionlp_st_2013_gro_ED:B-BindingOfTFToTFBindingSiteOfDNA)", + "433": "bionlp_st_2013_gro_ED:I-RNASplicing)", + "434": "bionlp_st_2013_gro_ED:B-PositiveRegulationOfTranscription)", + "435": "bionlp_st_2013_gro_ED:B-CellCyclePhase)", + "436": "bionlp_st_2013_gro_ED:B-Affecting)", + "437": "bionlp_st_2013_gro_ED:I-CellCycle)", + "438": "bionlp_st_2013_gro_ED:I-Transcription)", + "439": "bionlp_st_2013_gro_ED:I-MetabolicPathway)", + "440": "bionlp_st_2013_gro_ED:I-TranscriptionInitiation)", + "441": "bionlp_st_2013_gro_ED:B-CellCyclePhaseTransition)", + "442": "bionlp_st_2013_gro_ED:B-CellularMetabolicProcess)", + "443": "bionlp_st_2013_gro_ED:I-Mutation)", + "444": "bionlp_st_2013_gro_ED:I-PositiveRegulationOfGeneExpression)", + "445": "bionlp_st_2013_gro_ED:I-BindingToProtein)", + "446": "bionlp_st_2013_gro_ED:I-PositiveRegulationOfTranscription)", + "447": "bionlp_st_2013_gro_ED:I-CellCyclePhase)", + "448": "bionlp_st_2013_gro_ED:I-PositiveRegulationOfTranscriptionOfGene)", + "449": "bionlp_st_2013_gro_ED:B-ProteinBiosynthesis)", + "450": "bionlp_st_2013_gro_ED:I-CellularMetabolicProcess)", + "451": "bionlp_st_2013_gro_ED:I-CellularDevelopmentalProcess)", + "452": "bionlp_st_2013_gro_ED:B-Pathway)", + "453": "bionlp_st_2013_gro_ED:I-Splicing)", + "454": "bionlp_st_2013_gro_ED:B-BindingOfTranscriptionFactorToDNA)", + "455": "bionlp_st_2013_gro_ED:I-RegulatoryProcess)", + "456": "bionlp_st_2013_gro_ED:B-Homodimerization)", + "457": "bionlp_st_2013_gro_ED:B-PositiveRegulationOfTranscriptionOfGene)", + "458": "bionlp_st_2013_gro_ED:B-BindingOfProteinToProteinBindingSiteOfProtein)", + "459": "bionlp_st_2013_gro_ED:B-RegulationOfTranscription)", + "460": "bionlp_st_2013_gro_ED:I-RegulationOfTranscription)", + "461": "bionlp_st_2013_gro_ED:B-RNAProcessing)", + "462": "bionlp_st_2013_gro_ED:I-NegativeRegulation)", + "463": "bionlp_st_2013_gro_ED:I-CellCyclePhaseTransition)", + "464": "bionlp_st_2013_gro_ED:B-Elongation)", + "465": "bionlp_st_2013_gro_ED:B-ModificationOfMolecularEntity)", + "466": "bionlp_st_2013_gro_ED:I-CellGrowth)", + "467": "bionlp_st_2013_gro_ED:B-Dimerization)", + "468": "bionlp_st_2013_gro_ED:I-RNAProcessing)", + "469": "bionlp_st_2013_gro_ED:B-CellAdhesion)", + "470": "bionlp_st_2013_gro_ED:I-CellularComponentOrganizationAndBiogenesis)", + "471": "bionlp_st_2013_gro_ED:I-PositiveRegulation)", + "472": "bionlp_st_2013_gro_ED:B-FormationOfProteinDNAComplex)", + "473": "bionlp_st_2013_gro_ED:B-TranscriptionTermination)", + "474": "bionlp_st_2013_gro_ED:B-ProteinTransport)", + "475": "bionlp_st_2013_gro_ED:B-FormationOfTranscriptionFactorComplex)", + "476": "bionlp_st_2013_gro_ED:B-CellHomeostasis)", + "477": "bionlp_st_2013_gro_ED:I-Pathway)", + "478": "bionlp_st_2013_gro_ED:B-Cleavage)", + "479": "bionlp_st_2013_gro_ED:I-CellHomeostasis)", + "480": "bionlp_st_2013_gro_ED:I-Increase)", + "481": "bionlp_st_2013_gro_ED:I-RNABiosynthesis)", + "482": "bionlp_st_2013_gro_ED:B-Translation)", + "483": "bionlp_st_2013_gro_ED:B-RegulationOfGeneExpression)", + "484": "bionlp_st_2013_gro_ED:I-RegulationOfGeneExpression)", + "485": "bionlp_st_2013_gro_ED:B-Producing)", + "486": "bionlp_st_2013_gro_ED:I-CellAdhesion)", + "487": "bionlp_st_2013_gro_ED:I-Localization)", + "488": "bionlp_st_2013_gro_ED:B-ResponseToChemicalStimulus)", + "489": "bionlp_st_2013_gro_ED:B-OrganismalProcess)", + "490": "bionlp_st_2013_gro_ED:I-Transport)", + "491": "bionlp_st_2013_gro_ED:B-CatabolicPathway)", + "492": "bionlp_st_2013_gro_ED:B-RNABiosynthesis)", + "493": "bionlp_st_2013_gro_ED:B-BindingOfProteinToProteinBindingSiteOfDNA)", + "494": "bionlp_st_2013_gro_ED:I-BindingToRNA)", + "495": "bionlp_st_2013_gro_ED:I-ProteinTransport)", + "496": "bionlp_st_2013_gro_ED:B-ProteinModification)", + "497": "bionlp_st_2013_gro_ED:B-Silencing)", + "498": "bionlp_st_2013_gro_ED:I-Decrease)", + "499": "bionlp_st_2013_gro_ED:B-NegativeRegulationOfTranscriptionOfGene)", + "500": "bionlp_st_2013_gro_ED:B-BindingToMolecularEntity)", + "501": "bionlp_st_2013_gro_ED:I-BindingOfTFToTFBindingSiteOfDNA)", + "502": "bionlp_st_2013_gro_ED:B-BindingOfTFToTFBindingSiteOfProtein)", + "503": "bionlp_st_2013_gro_ED:I-OrganismalProcess)", + "504": "bionlp_st_2013_gro_ED:I-ProteinBiosynthesis)", + "505": "bionlp_st_2013_gro_ED:I-Elongation)", + "506": "bionlp_st_2013_gro_ED:I-ProteinCatabolism)", + "507": "bionlp_st_2013_gro_ED:B-Mitosis)", + "508": "bionlp_st_2013_gro_ED:B-Modification)", + "509": "bionlp_st_2013_gro_ED:B-Methylation)", + "510": "bionlp_st_2013_gro_ED:B-CellAging)", + "511": "bionlp_st_2013_gro_ED:B-Acetylation)", + "512": "bionlp_st_2013_gro_ED:I-TranscriptionOfGene)", + "513": "bionlp_st_2013_gro_ED:I-SPhase)", + "514": "bionlp_st_2013_gro_ED:B-ActivationOfProcess)", + "515": "bionlp_st_2013_gro_ED:I-FormationOfProteinDNAComplex)", + "516": "bionlp_st_2013_gro_ED:B-RegulationOfProcess)", + "517": "bionlp_st_2013_gro_ED:I-NegativeRegulationOfTranscriptionOfGene)", + "518": "bionlp_st_2013_gro_ED:B-MolecularInteraction)", + "519": "bionlp_st_2013_gro_ED:B-NegativeRegulationOfTranscriptionByTranscriptionRepressor)", + "520": "bionlp_st_2013_gro_ED:I-CellFateDetermination)", + "521": "bionlp_st_2013_gro_ED:B-RNAMetabolism)", + "522": "bionlp_st_2013_gro_ED:I-RNAMetabolism)", + "523": "bionlp_st_2013_gro_ED:B-ProteinMetabolism)", + "524": "bionlp_st_2013_gro_ED:I-Binding)", + "525": "bionlp_st_2013_gro_ED:I-Homodimerization)", + "526": "bionlp_st_2013_gro_ED:I-BindingOfProteinToProteinBindingSiteOfProtein)", + "527": "bionlp_st_2013_gro_ED:B-BindingOfDNABindingDomainOfProteinToDNA)", + "528": "bionlp_st_2013_gro_ED:B-GeneMutation)", + "529": "bionlp_st_2013_gro_ED:B-Growth)", + "530": "bionlp_st_2013_gro_ED:I-BindingOfTFToTFBindingSiteOfProtein)", + "531": "bionlp_st_2013_gro_ED:I-CatabolicPathway)", + "532": "bionlp_st_2013_gro_ED:I-TranscriptionTermination)", + "533": "bionlp_st_2013_gro_ED:B-BindingOfMolecularEntity)", + "534": "bionlp_st_2013_gro_ED:I-Heterodimerization)", + "535": "bionlp_st_2013_gro_ED:B-MolecularProcess)", + "536": "bionlp_st_2013_gro_ED:B-RegulationOfPathway)", + "537": "bionlp_st_2013_gro_ED:B-GeneSilencing)", + "538": "bionlp_st_2013_gro_ED:I-GeneSilencing)", + "539": "bionlp_st_2013_gro_ED:B-G1Phase)", + "540": "bionlp_st_2013_gro_ED:B-SPhase)", + "541": "bionlp_st_2013_gro_ED:B-Stabilization)", + "542": "bionlp_st_2013_gro_ED:B-FormationOfTranscriptionInitiationComplex)", + "543": "bionlp_st_2013_gro_ED:B-IntraCellularProcess)", + "544": "bionlp_st_2013_gro_ED:I-IntraCellularProcess)", + "545": "bionlp_st_2013_gro_ED:I-BindingOfProteinToDNA)", + "546": "bionlp_st_2013_gro_ED:I-Translation)", + "547": "bionlp_st_2013_gro_ED:B-IntraCellularTransport)", + "548": "bionlp_st_2013_gro_ED:I-IntraCellularTransport)", + "549": "bionlp_st_2013_gro_ED:B-RegulationOfFunction)", + "550": "bionlp_st_2013_gro_ED:B-PosttranslationalModification)", + "551": "bionlp_st_2013_gro_ED:I-PosttranslationalModification)", + "552": "bionlp_st_2013_gro_ED:B-ExperimentalIntervention)", + "553": "bionlp_st_2013_gro_ED:B-CellMotility)", + "554": "bionlp_st_2013_gro_ED:I-Phosphorylation)", + "555": "bionlp_st_2013_gro_ED:B-CellDivision)", + "556": "bionlp_st_2013_gro_ED:I-CellDivision)", + "557": "bionlp_st_2013_gro_ED:B-BindingOfProtein)", + "558": "bionlp_st_2013_gro_ED:B-NegativeRegulationOfGeneExpression)", + "559": "bionlp_st_2013_gro_ED:I-NegativeRegulationOfGeneExpression)", + "560": "bionlp_st_2013_gro_ED:I-Silencing)", + "561": "bionlp_st_2013_gro_ED:B-CellFateDetermination)", + "562": "bionlp_st_2013_gro_RE:None)", + "563": "bionlp_st_2013_gro_RE:hasPart)", + "564": "bionlp_st_2013_gro_RE:fromSpecies)", + "565": "bionlp_st_2013_gro_RE:locatedIn)", + "566": "bionlp_st_2013_gro_RE:encodes)", + "567": "bionlp_st_2013_gro_RE:hasFunction)", + "568": "bionlp_st_2013_gro_ner:O)", + "569": "bionlp_st_2013_gro_ner:B-Protein)", + "570": "bionlp_st_2013_gro_ner:I-Protein)", + "571": "bionlp_st_2013_gro_ner:B-Eukaryote)", + "572": "bionlp_st_2013_gro_ner:B-Gene)", + "573": "bionlp_st_2013_gro_ner:B-Cell)", + "574": "bionlp_st_2013_gro_ner:B-Enzyme)", + "575": "bionlp_st_2013_gro_ner:I-Cell)", + "576": "bionlp_st_2013_gro_ner:B-TranscriptionFactor)", + "577": "bionlp_st_2013_gro_ner:B-Tissue)", + "578": "bionlp_st_2013_gro_ner:B-ProteinDomain)", + "579": "bionlp_st_2013_gro_ner:I-TranscriptionFactor)", + "580": "bionlp_st_2013_gro_ner:B-DNA)", + "581": "bionlp_st_2013_gro_ner:B-ProteinSubunit)", + "582": "bionlp_st_2013_gro_ner:I-Gene)", + "583": "bionlp_st_2013_gro_ner:I-ProteinDomain)", + "584": "bionlp_st_2013_gro_ner:I-Enzyme)", + "585": "bionlp_st_2013_gro_ner:B-CellComponent)", + "586": "bionlp_st_2013_gro_ner:B-AminoAcid)", + "587": "bionlp_st_2013_gro_ner:I-Tissue)", + "588": "bionlp_st_2013_gro_ner:B-ProteinComplex)", + "589": "bionlp_st_2013_gro_ner:B-Chemical)", + "590": "bionlp_st_2013_gro_ner:B-Chromosome)", + "591": "bionlp_st_2013_gro_ner:I-ProteinSubunit)", + "592": "bionlp_st_2013_gro_ner:I-AminoAcid)", + "593": "bionlp_st_2013_gro_ner:B-Promoter)", + "594": "bionlp_st_2013_gro_ner:B-MessengerRNA)", + "595": "bionlp_st_2013_gro_ner:B-Virus)", + "596": "bionlp_st_2013_gro_ner:B-Nucleus)", + "597": "bionlp_st_2013_gro_ner:B-Peptide)", + "598": "bionlp_st_2013_gro_ner:I-ProteinComplex)", + "599": "bionlp_st_2013_gro_ner:B-Sequence)", + "600": "bionlp_st_2013_gro_ner:I-DNA)", + "601": "bionlp_st_2013_gro_ner:B-Ion)", + "602": "bionlp_st_2013_gro_ner:I-CellComponent)", + "603": "bionlp_st_2013_gro_ner:B-DNARegion)", + "604": "bionlp_st_2013_gro_ner:I-DNARegion)", + "605": "bionlp_st_2013_gro_ner:B-ExperimentalMethod)", + "606": "bionlp_st_2013_gro_ner:I-Virus)", + "607": "bionlp_st_2013_gro_ner:I-Chromosome)", + "608": "bionlp_st_2013_gro_ner:B-Transcript)", + "609": "bionlp_st_2013_gro_ner:B-OrganicChemical)", + "610": "bionlp_st_2013_gro_ner:I-ZincCoordinatingDomain)", + "611": "bionlp_st_2013_gro_ner:B-RNA)", + "612": "bionlp_st_2013_gro_ner:B-Function)", + "613": "bionlp_st_2013_gro_ner:B-MutantProtein)", + "614": "bionlp_st_2013_gro_ner:B-Exon)", + "615": "bionlp_st_2013_gro_ner:B-CatalyticActivity)", + "616": "bionlp_st_2013_gro_ner:I-MutantProtein)", + "617": "bionlp_st_2013_gro_ner:B-ZincCoordinatingDomain)", + "618": "bionlp_st_2013_gro_ner:I-Eukaryote)", + "619": "bionlp_st_2013_gro_ner:I-ExperimentalMethod)", + "620": "bionlp_st_2013_gro_ner:B-TranscriptionRegulator)", + "621": "bionlp_st_2013_gro_ner:B-Enhancer)", + "622": "bionlp_st_2013_gro_ner:I-Chemical)", + "623": "bionlp_st_2013_gro_ner:B-Ligand)", + "624": "bionlp_st_2013_gro_ner:I-Peptide)", + "625": "bionlp_st_2013_gro_ner:B-TranscriptionCofactor)", + "626": "bionlp_st_2013_gro_ner:I-OpenReadingFrame)", + "627": "bionlp_st_2013_gro_ner:I-ProteinBindingSiteOfDNA)", + "628": "bionlp_st_2013_gro_ner:B-Nucleotide)", + "629": "bionlp_st_2013_gro_ner:I-DNABindingDomainOfProtein)", + "630": "bionlp_st_2013_gro_ner:B-ProteinBindingSiteOfDNA)", + "631": "bionlp_st_2013_gro_ner:B-DNABindingDomainOfProtein)", + "632": "bionlp_st_2013_gro_ner:B-TranscriptionActivator)", + "633": "bionlp_st_2013_gro_ner:B-MutatedProtein)", + "634": "bionlp_st_2013_gro_ner:I-RegulatoryDNARegion)", + "635": "bionlp_st_2013_gro_ner:I-GeneProduct)", + "636": "bionlp_st_2013_gro_ner:I-Promoter)", + "637": "bionlp_st_2013_gro_ner:I-MutatedProtein)", + "638": "bionlp_st_2013_gro_ner:B-ForkheadWingedHelixTF)", + "639": "bionlp_st_2013_gro_ner:I-RNAPolymerase)", + "640": "bionlp_st_2013_gro_ner:I-TranscriptionRegulator)", + "641": "bionlp_st_2013_gro_ner:B-Prokaryote)", + "642": "bionlp_st_2013_gro_ner:B-RegulatoryDNARegion)", + "643": "bionlp_st_2013_gro_ner:B-MolecularStructure)", + "644": "bionlp_st_2013_gro_ner:B-ReporterGene)", + "645": "bionlp_st_2013_gro_ner:I-ReporterGene)", + "646": "bionlp_st_2013_gro_ner:B-TranscriptionCoactivator)", + "647": "bionlp_st_2013_gro_ner:I-RNA)", + "648": "bionlp_st_2013_gro_ner:B-bHLHTF)", + "649": "bionlp_st_2013_gro_ner:I-Enhancer)", + "650": "bionlp_st_2013_gro_ner:I-OrganicChemical)", + "651": "bionlp_st_2013_gro_ner:I-ForkheadWingedHelixTF)", + "652": "bionlp_st_2013_gro_ner:B-GeneProduct)", + "653": "bionlp_st_2013_gro_ner:B-TranscriptionRepressor)", + "654": "bionlp_st_2013_gro_ner:B-HomeoboxTF)", + "655": "bionlp_st_2013_gro_ner:B-Lipid)", + "656": "bionlp_st_2013_gro_ner:B-OpenReadingFrame)", + "657": "bionlp_st_2013_gro_ner:I-RNAPolymeraseII)", + "658": "bionlp_st_2013_gro_ner:B-tRNA)", + "659": "bionlp_st_2013_gro_ner:I-ZincCoordinatingDomainTF)", + "660": "bionlp_st_2013_gro_ner:I-MessengerRNA)", + "661": "bionlp_st_2013_gro_ner:I-Sequence)", + "662": "bionlp_st_2013_gro_ner:I-NuclearReceptor)", + "663": "bionlp_st_2013_gro_ner:B-Intron)", + "664": "bionlp_st_2013_gro_ner:I-TranscriptionCoactivator)", + "665": "bionlp_st_2013_gro_ner:B-MolecularEntity)", + "666": "bionlp_st_2013_gro_ner:B-HMG)", + "667": "bionlp_st_2013_gro_ner:B-bHLH)", + "668": "bionlp_st_2013_gro_ner:I-Prokaryote)", + "669": "bionlp_st_2013_gro_ner:I-TranscriptionRepressor)", + "670": "bionlp_st_2013_gro_ner:I-bHLHTF)", + "671": "bionlp_st_2013_gro_ner:B-Stress)", + "672": "bionlp_st_2013_gro_ner:B-DNAFragment)", + "673": "bionlp_st_2013_gro_ner:I-CatalyticActivity)", + "674": "bionlp_st_2013_gro_ner:I-TranscriptionActivator)", + "675": "bionlp_st_2013_gro_ner:I-Exon)", + "676": "bionlp_st_2013_gro_ner:B-RNAPolymerase)", + "677": "bionlp_st_2013_gro_ner:I-UpstreamRegulatorySequence)", + "678": "bionlp_st_2013_gro_ner:I-Stress)", + "679": "bionlp_st_2013_gro_ner:I-Function)", + "680": "bionlp_st_2013_gro_ner:I-Nucleus)", + "681": "bionlp_st_2013_gro_ner:B-FusionProtein)", + "682": "bionlp_st_2013_gro_ner:I-AntisenseRNA)", + "683": "bionlp_st_2013_gro_ner:I-ForkheadWingedHelix)", + "684": "bionlp_st_2013_gro_ner:B-Agonist)", + "685": "bionlp_st_2013_gro_ner:I-TranscriptionFactorBindingSiteOfDNA)", + "686": "bionlp_st_2013_gro_ner:B-Substrate)", + "687": "bionlp_st_2013_gro_ner:B-SecondMessenger)", + "688": "bionlp_st_2013_gro_ner:I-Agonist)", + "689": "bionlp_st_2013_gro_ner:B-LivingEntity)", + "690": "bionlp_st_2013_gro_ner:B-Phenotype)", + "691": "bionlp_st_2013_gro_ner:B-TranscriptionFactorBindingSiteOfDNA)", + "692": "bionlp_st_2013_gro_ner:B-Ribosome)", + "693": "bionlp_st_2013_gro_ner:B-BindingSiteOfProtein)", + "694": "bionlp_st_2013_gro_ner:I-DNAFragment)", + "695": "bionlp_st_2013_gro_ner:I-FusionGene)", + "696": "bionlp_st_2013_gro_ner:I-TranscriptionActivatorActivity)", + "697": "bionlp_st_2013_gro_ner:B-Locus)", + "698": "bionlp_st_2013_gro_ner:I-tRNA)", + "699": "bionlp_st_2013_gro_ner:B-Chromatin)", + "700": "bionlp_st_2013_gro_ner:I-TranscriptionCofactor)", + "701": "bionlp_st_2013_gro_ner:B-UpstreamRegulatorySequence)", + "702": "bionlp_st_2013_gro_ner:B-TranscriptionFactorActivity)", + "703": "bionlp_st_2013_gro_ner:B-FusionGene)", + "704": "bionlp_st_2013_gro_ner:I-HMGTF)", + "705": "bionlp_st_2013_gro_ner:B-bZIP)", + "706": "bionlp_st_2013_gro_ner:B-TranslationFactor)", + "707": "bionlp_st_2013_gro_ner:I-TranslationFactor)", + "708": "bionlp_st_2013_gro_ner:B-TranscriptionActivatorActivity)", + "709": "bionlp_st_2013_gro_ner:I-HomeoboxTF)", + "710": "bionlp_st_2013_gro_ner:B-TranscriptionFactorComplex)", + "711": "bionlp_st_2013_gro_ner:B-NuclearReceptor)", + "712": "bionlp_st_2013_gro_ner:B-SequenceHomologyAnalysis)", + "713": "bionlp_st_2013_gro_ner:I-SequenceHomologyAnalysis)", + "714": "bionlp_st_2013_gro_ner:I-Locus)", + "715": "bionlp_st_2013_gro_ner:B-RNAPolymeraseII)", + "716": "bionlp_st_2013_gro_ner:B-AntisenseRNA)", + "717": "bionlp_st_2013_gro_ner:B-TranscriptionRepressorActivity)", + "718": "bionlp_st_2013_gro_ner:I-TranscriptionFactorComplex)", + "719": "bionlp_st_2013_gro_ner:B-HMGTF)", + "720": "bionlp_st_2013_gro_ner:I-HMG)", + "721": "bionlp_st_2013_gro_ner:B-TATAbox)", + "722": "bionlp_st_2013_gro_ner:B-ProteinBindingSiteOfProtein)", + "723": "bionlp_st_2013_gro_ner:B-OxidativeStress)", + "724": "bionlp_st_2013_gro_ner:B-ForkheadWingedHelix)", + "725": "bionlp_st_2013_gro_ner:I-PrimaryStructure)", + "726": "bionlp_st_2013_gro_ner:B-ComplexOfProteinAndRNA)", + "727": "bionlp_st_2013_gro_ner:B-bZIPTF)", + "728": "bionlp_st_2013_gro_ner:B-ExpressionProfiling)", + "729": "bionlp_st_2013_gro_ner:I-MolecularEntity)", + "730": "bionlp_st_2013_gro_ner:B-ZincCoordinatingDomainTF)", + "731": "bionlp_st_2013_gro_ner:B-ProteinIdentification)", + "732": "bionlp_st_2013_gro_ner:I-ProteinCodingRegion)", + "733": "bionlp_st_2013_gro_ner:I-TATAbox)", + "734": "bionlp_st_2013_gro_ner:I-MolecularStructure)", + "735": "bionlp_st_2013_gro_ner:I-bZIP)", + "736": "bionlp_st_2013_gro_ner:I-ProteinBindingSiteOfProtein)", + "737": "bionlp_st_2013_gro_ner:B-EukaryoticCell)", + "738": "bionlp_st_2013_gro_ner:I-Nucleotide)", + "739": "bionlp_st_2013_gro_ner:B-Microorganism)", + "740": "bionlp_st_2013_gro_ner:I-BindingAssay)", + "741": "bionlp_st_2013_gro_ner:B-ThreeDimensionalMolecularStructure)", + "742": "bionlp_st_2013_gro_ner:I-ThreeDimensionalMolecularStructure)", + "743": "bionlp_st_2013_gro_ner:I-EukaryoticCell)", + "744": "bionlp_st_2013_gro_ner:I-TranscriptionRepressorActivity)", + "745": "bionlp_st_2013_gro_ner:B-InorganicChemical)", + "746": "bionlp_st_2013_gro_ner:I-InorganicChemical)", + "747": "bionlp_st_2013_gro_ner:B-ComplexMolecularEntity)", + "748": "bionlp_st_2013_gro_ner:B-DNABindingSite)", + "749": "bionlp_st_2013_gro_ner:I-ExpressionProfiling)", + "750": "bionlp_st_2013_gro_ner:B-NucleicAcid)", + "751": "bionlp_st_2013_gro_ner:I-NucleicAcid)", + "752": "bionlp_st_2013_gro_ner:I-BindingSiteOfProtein)", + "753": "bionlp_st_2013_gro_ner:I-FusionProtein)", + "754": "bionlp_st_2013_gro_ner:B-ProteinCodingRegion)", + "755": "bionlp_st_2013_gro_ner:I-bHLH)", + "756": "bionlp_st_2013_gro_ner:I-Ion)", + "757": "bionlp_st_2013_gro_ner:B-BasicDomain)", + "758": "bionlp_st_2013_gro_ner:I-BasicDomain)", + "759": "bionlp_st_2013_gro_ner:B-BindingAssay)", + "760": "bionlp_st_2013_gro_ner:I-OxidativeStress)", + "761": "bionlp_st_2013_gro_ner:B-RibosomalRNA)", + "762": "bionlp_st_2013_gro_ner:B-PrimaryStructure)", + "763": "bionlp_st_2013_gro_ner:B-Heterochromatin)", + "764": "bionlp_st_2013_gro_ner:B-ChromosomalDNA)", + "765": "bionlp_st_2013_gro_ner:I-ChromosomalDNA)", + "766": "bionlp_st_2013_gro_ner:B-Vitamin)", + "767": "bionlp_st_2013_gro_ner:B-MutantGene)", + "768": "bionlp_st_2013_gro_ner:I-bZIPTF)", + "769": "bionlp_st_2013_gro_ner:I-TranscriptionFactorActivity)", + "770": "bionlp_st_2013_gro_ner:B-DNAMolecule)", + "771": "bionlp_st_2013_gro_ner:I-DNAMolecule)", + "772": "bionlp_st_2013_gro_ner:I-Histone)", + "773": "bionlp_st_2013_gro_ner:I-SecondMessenger)", + "774": "bionlp_st_2013_gro_ner:B-PhysicalContact)", + "775": "bionlp_st_2013_gro_ner:B-HomeoBox)", + "776": "bionlp_st_2013_gro_ner:B-Holoenzyme)", + "777": "bionlp_st_2013_gro_ner:I-RibosomalRNA)", + "778": "bionlp_st_2013_gro_ner:B-Operon)", + "779": "bionlp_st_2013_gro_ner:I-Operon)", + "780": "bionlp_st_2013_gro_ner:I-SmallInterferingRNA)", + "781": "bionlp_st_2013_gro_ner:I-ComplexMolecularEntity)", + "782": "bionlp_st_2013_gro_ner:B-ReporterGeneConstruction)", + "783": "bionlp_st_2013_gro_ner:B-RuntLikeDomain)", + "784": "bionlp_st_2013_gro_ner:I-RuntLikeDomain)", + "785": "bionlp_st_2013_gro_ner:I-ReporterGeneConstruction)", + "786": "bionlp_st_2013_gro_ner:B-AP2EREBPRelatedDomain)", + "787": "bionlp_st_2013_gro_ner:B-ProteinCodingDNARegion)", + "788": "bionlp_st_2013_gro_ner:I-ProteinCodingDNARegion)", + "789": "bionlp_st_2013_gro_ner:B-Spliceosome)", + "790": "bionlp_st_2013_gro_ner:B-BetaScaffoldDomain_WithMinorGrooveContacts)", + "791": "bionlp_st_2013_gro_ner:I-BetaScaffoldDomain_WithMinorGrooveContacts)", + "792": "bionlp_st_2013_gro_ner:I-Vitamin)", + "793": "bionlp_st_2013_gro_ner:B-Organism)", + "794": "bionlp_st_2013_gro_ner:I-Phenotype)", + "795": "bionlp_st_2013_gro_ner:B-PositiveTranscriptionRegulator)", + "796": "bionlp_st_2013_gro_ner:I-PositiveTranscriptionRegulator)", + "797": "bionlp_st_2013_gro_ner:B-Histone)", + "798": "bionlp_st_2013_gro_ner:B-Attenuator)", + "799": "bionlp_st_2013_gro_ner:I-Attenuator)", + "800": "bionlp_st_2013_gro_ner:B-DoubleStrandDNA)", + "801": "bionlp_st_2013_gro_ner:I-DoubleStrandDNA)", + "802": "bionlp_st_2013_gro_ner:B-MolecularFunction)", + "803": "bionlp_st_2013_gro_ner:I-MolecularFunction)", + "804": "bionlp_st_2013_gro_ner:I-Ligand)", + "805": "bionlp_st_2013_gro_ner:I-Holoenzyme)", + "806": "bionlp_st_2013_gro_ner:B-TranscriptionCorepressor)", + "807": "bionlp_st_2013_gro_ner:I-DNABindingSite)", + "808": "bionlp_st_2013_gro_ner:B-Polymerase)", + "809": "bionlp_st_2013_gro_ner:B-ComplexOfProteinAndDNA)", + "810": "bionlp_st_2013_gro_ner:I-Chromatin)", + "811": "bionlp_st_2013_gro_ner:B-SmallInterferingRNA)", + "812": "bionlp_st_2013_gro_ner:B-Conformation)", + "813": "bionlp_st_2013_gro_ner:B-CpGIsland)", + "814": "bionlp_st_2013_gro_ner:I-CpGIsland)", + "815": "bionlp_st_2013_gro_ner:B-PhysicalContinuant)", + "816": "bionlp_st_2013_gro_ner:B-FusionOfGeneWithReporterGene)", + "817": "bionlp_st_2013_gro_ner:I-AP2EREBPRelatedDomain)", + "818": "bionlp_st_2013_gro_ner:B-Nucleosome)", + "819": "bionlp_st_2013_gro_ner:I-Ribosome)", + "820": "bionlp_st_2013_gro_ner:I-Lipid)", + "821": "bionlp_st_2013_gro_ner:I-ComplexOfProteinAndRNA)", + "822": "bionlp_st_2013_gro_ner:B-GeneRegion)", + "823": "bionlp_st_2013_gro_ner:I-GeneRegion)", + "824": "bionlp_st_2013_gro_ner:B-RNAMolecule)", + "825": "bionlp_st_2013_gro_ner:I-RNAMolecule)", + "826": "bionlp_st_2013_pc_COREF:None)", + "827": "bionlp_st_2013_pc_COREF:coref)", + "828": "bionlp_st_2013_pc_EAE:None)", + "829": "bionlp_st_2013_pc_EAE:Theme)", + "830": "bionlp_st_2013_pc_EAE:Cause)", + "831": "bionlp_st_2013_pc_EAE:Participant)", + "832": "bionlp_st_2013_pc_EAE:Site)", + "833": "bionlp_st_2013_pc_EAE:Product)", + "834": "bionlp_st_2013_pc_EAE:ToLoc)", + "835": "bionlp_st_2013_pc_EAE:AtLoc)", + "836": "bionlp_st_2013_pc_EAE:FromLoc)", + "837": "bionlp_st_2013_pc_EAE:Cause|Theme)", + "838": "bionlp_st_2013_pc_EAE:FromLoc|ToLoc)", + "839": "bionlp_st_2013_pc_ED:O)", + "840": "bionlp_st_2013_pc_ED:B-Positive_regulation)", + "841": "bionlp_st_2013_pc_ED:B-Negative_regulation)", + "842": "bionlp_st_2013_pc_ED:B-Regulation)", + "843": "bionlp_st_2013_pc_ED:B-Binding)", + "844": "bionlp_st_2013_pc_ED:B-Pathway)", + "845": "bionlp_st_2013_pc_ED:B-Phosphorylation)", + "846": 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+ "886": "bionlp_st_2019_bb_RE:None)", + "887": "bionlp_st_2019_bb_RE:Lives_In)", + "888": "bionlp_st_2019_bb_RE:Exhibits)", + "889": "bionlp_st_2019_bb_ner:O)", + "890": "bionlp_st_2019_bb_ner:I-Habitat)", + "891": "bionlp_st_2019_bb_ner:B-Habitat)", + "892": "bionlp_st_2019_bb_ner:B-Microorganism)", + "893": "bionlp_st_2019_bb_ner:I-Microorganism)", + "894": "bionlp_st_2019_bb_ner:B-Phenotype)", + "895": "bionlp_st_2019_bb_ner:I-Phenotype)", + "896": "biorelex_COREF:None)", + "897": "biorelex_COREF:coref)", + "898": "biorelex_RE:None)", + "899": "biorelex_RE:bind)", + "900": "biorelex_ner:O)", + "901": "biorelex_ner:B-protein)", + "902": "biorelex_ner:B-protein-family)", + "903": "biorelex_ner:B-chemical)", + "904": "biorelex_ner:B-DNA)", + "905": "biorelex_ner:I-protein)", + "906": "biorelex_ner:B-protein-complex)", + "907": "biorelex_ner:B-protein-domain)", + "908": "biorelex_ner:I-DNA)", + "909": "biorelex_ner:I-protein-family)", + "910": "biorelex_ner:B-experiment-tag)", + "911": 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