import os from typing import Any, Optional, Tuple, Union import torch import transformers from torch.nn import CrossEntropyLoss from transformers import PreTrainedTokenizerFast, VisionEncoderDecoderModel from transformers.configuration_utils import PretrainedConfig from transformers.modeling_outputs import BaseModelOutput, Seq2SeqLMOutput from transformers.modeling_utils import PreTrainedModel from transformers.models.vision_encoder_decoder.configuration_vision_encoder_decoder import \ VisionEncoderDecoderConfig from transformers.utils import logging logger = logging.get_logger(__name__) class CvtWithProjectionHeadConfig(transformers.CvtConfig): def __init__(self, projection_size: int = None, **kwargs: Any) -> None: super().__init__(**kwargs) self.projection_size = projection_size class ModelOutputWithProjectionEmbedding(transformers.modeling_outputs.ModelOutput): last_hidden_state: torch.FloatTensor class CvtProjectionHead(torch.nn.Module): def __init__(self, config) -> None: super().__init__() # https://github.com/huggingface/transformers/blob/68287689f2f0d8b7063c400230b3766987abf18d/src/transformers/models/cvt/modeling_cvt.py#L657 self.layer_norm = torch.nn.LayerNorm(config.embed_dim[-1], eps=config.layer_norm_eps) # No bias as following layer normalisation with bias: self.projection = torch.nn.Linear(config.embed_dim[-1], config.projection_size, bias=False) def forward(self, x: torch.Tensor) -> torch.Tensor: x = self.layer_norm(x) x = self.projection(x) return x class CvtWithProjectionHead(transformers.CvtPreTrainedModel): def __init__(self, config): super().__init__(config) self.cvt = transformers.CvtModel(config, add_pooling_layer=False) self.projection_head = CvtProjectionHead(config) # Initialize weights and apply final processing: self.post_init() def forward( self, pixel_values: Optional[torch.Tensor] = None, output_hidden_states: Optional[bool] = None, return_dict: Optional[bool] = None, ) -> Union[Tuple, ModelOutputWithProjectionEmbedding]: return_dict = return_dict if return_dict is not None else self.config.use_return_dict outputs = self.cvt( pixel_values, output_hidden_states=output_hidden_states, return_dict=return_dict, ) projection = self.projection_head( torch.permute(torch.flatten(outputs.last_hidden_state, 2), [0, 2, 1]), ) if not return_dict: return projection return ModelOutputWithProjectionEmbedding( last_hidden_state=projection, ) class MedICapEncoderDecoderModel(VisionEncoderDecoderModel): config_class = VisionEncoderDecoderConfig base_model_prefix = "vision_encoder_decoder" main_input_name = "pixel_values" supports_gradient_checkpointing = True def __init__( self, config: Optional[PretrainedConfig] = None, encoder: Optional[PreTrainedModel] = None, decoder: Optional[PreTrainedModel] = None, ): if decoder: assert not decoder.config.add_cross_attention, '"add_cross_attention" must be False for the given decoder' assert decoder.config.is_decoder, '"is_decoder" must be True for the given decoder' if config is None and (encoder is None or decoder is None): raise ValueError("Either a configuration or an encoder and a decoder has to be provided.") if config is None: config = VisionEncoderDecoderConfig.from_encoder_decoder_configs(encoder.config, decoder.config) else: if not isinstance(config, self.config_class): raise ValueError(f"Config: {config} has to be of type {self.config_class}") config.tie_word_embeddings = False # initialize with config PreTrainedModel.__init__(self, config) # Encoder: if encoder is None: encoder = CvtWithProjectionHead(config=config.encoder) # Decoder: if decoder is None: decoder = transformers.GPT2LMHeadModel(config=config.decoder) self.encoder = encoder self.decoder = decoder if self.encoder.config.to_dict() != self.config.encoder.to_dict(): logger.warning( f"Config of the encoder: {self.encoder.__class__} is overwritten by shared encoder config:" f" {self.config.encoder}" ) if self.decoder.config.to_dict() != self.config.decoder.to_dict(): logger.warning( f"Config of the decoder: {self.decoder.__class__} is overwritten by shared decoder config:" f" {self.config.decoder}" ) self.encoder.config = self.config.encoder self.decoder.config = self.config.decoder def forward( self, pixel_values: Optional[torch.FloatTensor] = None, decoder_input_ids: Optional[torch.LongTensor] = None, decoder_attention_mask: Optional[torch.BoolTensor] = None, encoder_outputs: Optional[Tuple[torch.FloatTensor]] = None, past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None, decoder_inputs_embeds: Optional[torch.FloatTensor] = None, labels: Optional[torch.LongTensor] = None, use_cache: Optional[bool] = None, output_attentions: Optional[bool] = None, output_hidden_states: Optional[bool] = None, return_dict: Optional[bool] = None, **kwargs, ) -> Union[Tuple[torch.FloatTensor], Seq2SeqLMOutput]: return_dict = return_dict if return_dict is not None else self.config.use_return_dict kwargs_encoder = {argument: value for argument, value in kwargs.items() if not argument.startswith("decoder_")} kwargs_decoder = { argument[len("decoder_") :]: value for argument, value in kwargs.items() if argument.startswith("decoder_") } if decoder_inputs_embeds is None: decoder_inputs_embeds = self.decoder.transformer.wte(decoder_input_ids) if encoder_outputs is None: if pixel_values is None: raise ValueError("You have to specify pixel_values") encoder_outputs = self.encoder( pixel_values, output_hidden_states=output_hidden_states, return_dict=return_dict, **kwargs_encoder, ) # CvT does not support output_attentions. decoder_inputs_embeds = torch.cat([encoder_outputs[0], decoder_inputs_embeds], dim=1) if decoder_attention_mask is not None: decoder_attention_mask = torch.cat( [ torch.ones(encoder_outputs[0].shape[:-1], dtype=decoder_attention_mask.dtype, device=self.device), decoder_attention_mask ], dim=1, ) decoder_outputs = self.decoder( attention_mask=decoder_attention_mask, inputs_embeds=decoder_inputs_embeds, output_attentions=output_attentions, output_hidden_states=output_hidden_states, use_cache=use_cache, past_key_values=past_key_values, return_dict=return_dict, **kwargs_decoder, ) # Loss: loss = None if labels is not None: logits = decoder_outputs.logits if return_dict else decoder_outputs[0] loss_fct = CrossEntropyLoss() loss = loss_fct(logits.reshape(-1, self.decoder.config.vocab_size), labels.reshape(-1)) if not return_dict: if loss is not None: return (loss,) + decoder_outputs + encoder_outputs else: return decoder_outputs + encoder_outputs return Seq2SeqLMOutput( loss=loss, logits=decoder_outputs.logits, past_key_values=decoder_outputs.past_key_values, decoder_hidden_states=decoder_outputs.hidden_states, decoder_attentions=decoder_outputs.attentions, cross_attentions=decoder_outputs.cross_attentions, encoder_last_hidden_state=encoder_outputs.last_hidden_state, ) def prepare_inputs_for_generation( self, input_ids, past_key_values=None, attention_mask=None, use_cache=None, encoder_outputs=None, **kwargs, ): """ Modification of: https://github.com/huggingface/transformers/blob/main/src/transformers/models/encoder_decoder/modeling_encoder_decoder.py#L660 This can help with managing input_embeds and input_ids: https://github.com/huggingface/transformers/issues/6535 """ input_dict = {'use_cache': use_cache, 'encoder_outputs': encoder_outputs, 'attention_mask': attention_mask} if past_key_values is None: decoder_inputs = self.decoder.prepare_inputs_for_generation( input_ids, inputs_embeds=encoder_outputs[0], past_key_values=past_key_values, ) input_dict['decoder_inputs_embeds'] = decoder_inputs['inputs_embeds'] else: decoder_inputs = self.decoder.prepare_inputs_for_generation( input_ids, past_key_values=past_key_values, ) input_dict['decoder_input_ids'] = decoder_inputs['input_ids'] input_dict['past_key_values'] = decoder_inputs['past_key_values'] input_dict['decoder_attention_mask'] = decoder_inputs['attention_mask'] if 'attention_mask' in decoder_inputs else None return input_dict def tokenize_captions_teacher_forcing( self, captions: str, tokenizer: PreTrainedTokenizerFast, max_len: int, ): """ Tokenizes the captions and creates the inputs and targets for teacher forcing. Argument/s: captions - the captions. tokenizer - Hugging Face tokenizer. max_len - maximum number of tokens. Returns: batch_dict = { decoder_input_ids - the token identifiers for the input of the decoder. decoder_attention_mask - the attention mask for the decoder_input_ids. decoder_token_type_ids - the token type identifiers for the decoder_input_ids. label_ids - the label token identifiers for the decoder. } """ # Prepare the caption for the tokenizer by placing the special tokens: caption = [f'{tokenizer.bos_token}{i}{tokenizer.eos_token}' for i in captions] # Tokenize the caption: tokenized = tokenizer( caption, padding='longest', truncation=True, max_length=max_len + 1, # +1 to account for the shift between input and target. return_tensors='pt', return_token_type_ids=False, add_special_tokens=False, # Done in prepare_sections_for_tokenizer() ).to(self.device) # Modify for language modelling: batch_dict = { # Labels for the decoder (shifted right by one for autoregression): 'label_ids': tokenized['input_ids'][:, 1:].detach().clone(), # Remove last token identifier to match the sequence length of the labels: 'decoder_input_ids': tokenized['input_ids'][:, :-1], # Attention mask for the decoder_input_ids (remove first token so that the eos_token_id is not considered): 'decoder_attention_mask': tokenized['attention_mask'][:, 1:], } return batch_dict