# coding=utf-8 # Copyright 2021 NVIDIA Corporation. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """ Finetuning the library models for question-answering on SQuAD (DistilBERT, Bert, XLM, XLNet).""" import argparse import logging import os import time import timeit import datasets import numpy as np import pycuda.autoinit # noqa: F401 import pycuda.driver as cuda import tensorrt as trt import torch from absl import logging as absl_logging from accelerate import Accelerator from datasets import load_dataset, load_metric from torch.utils.data import DataLoader from utils_qa import postprocess_qa_predictions import transformers from transformers import AutoTokenizer, EvalPrediction, default_data_collator, set_seed from transformers.trainer_pt_utils import nested_concat, nested_truncate TRT_LOGGER = trt.Logger(trt.Logger.WARNING) absl_logger = absl_logging.get_absl_logger() absl_logger.setLevel(logging.WARNING) logger = logging.getLogger(__name__) parser = argparse.ArgumentParser() # Required parameters parser.add_argument( "--onnx_model_path", default=None, type=str, required=True, help="Path to ONNX model: ", ) parser.add_argument( "--output_dir", default=None, type=str, required=True, help="The output directory where the model checkpoints and predictions will be written.", ) # Other parameters parser.add_argument( "--tokenizer_name", default="", type=str, required=True, help="Pretrained tokenizer name or path if not the same as model_name", ) parser.add_argument( "--version_2_with_negative", action="store_true", help="If true, the SQuAD examples contain some that do not have an answer.", ) parser.add_argument( "--null_score_diff_threshold", type=float, default=0.0, help="If null_score - best_non_null is greater than the threshold predict null.", ) parser.add_argument( "--max_seq_length", default=384, type=int, help=( "The maximum total input sequence length after WordPiece tokenization. Sequences " "longer than this will be truncated, and sequences shorter than this will be padded." ), ) parser.add_argument( "--doc_stride", default=128, type=int, help="When splitting up a long document into chunks, how much stride to take between chunks.", ) parser.add_argument("--per_device_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation.") parser.add_argument( "--n_best_size", default=20, type=int, help="The total number of n-best predictions to generate in the nbest_predictions.json output file.", ) parser.add_argument( "--max_answer_length", default=30, type=int, help=( "The maximum length of an answer that can be generated. This is needed because the start " "and end predictions are not conditioned on one another." ), ) parser.add_argument("--seed", type=int, default=42, help="random seed for initialization") parser.add_argument( "--dataset_name", type=str, default=None, required=True, help="The name of the dataset to use (via the datasets library).", ) parser.add_argument( "--dataset_config_name", type=str, default=None, help="The configuration name of the dataset to use (via the datasets library).", ) parser.add_argument( "--preprocessing_num_workers", type=int, default=4, help="A csv or a json file containing the training data." ) parser.add_argument("--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets") parser.add_argument( "--fp16", action="store_true", help="Whether to use 16-bit (mixed) precision instead of 32-bit", ) parser.add_argument( "--int8", action="store_true", help="Whether to use INT8", ) args = parser.parse_args() if args.tokenizer_name: tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_name, use_fast=True) else: raise ValueError( "You are instantiating a new tokenizer from scratch. This is not supported by this script." "You can do it from another script, save it, and load it from here, using --tokenizer_name." ) logger.info("Training/evaluation parameters %s", args) args.eval_batch_size = args.per_device_eval_batch_size INPUT_SHAPE = (args.eval_batch_size, args.max_seq_length) # TRT Engine properties STRICT_TYPES = True engine_name = "temp_engine/bert-fp32.engine" if args.fp16: engine_name = "temp_engine/bert-fp16.engine" if args.int8: engine_name = "temp_engine/bert-int8.engine" # import ONNX file if not os.path.exists("temp_engine"): os.makedirs("temp_engine") EXPLICIT_BATCH = 1 << (int)(trt.NetworkDefinitionCreationFlag.EXPLICIT_BATCH) with trt.Builder(TRT_LOGGER) as builder, builder.create_network(EXPLICIT_BATCH) as network, trt.OnnxParser( network, TRT_LOGGER ) as parser: with open(args.onnx_model_path, "rb") as model: if not parser.parse(model.read()): for error in range(parser.num_errors): print(parser.get_error(error)) # Query input names and shapes from parsed TensorRT network network_inputs = [network.get_input(i) for i in range(network.num_inputs)] input_names = [_input.name for _input in network_inputs] # ex: ["actual_input1"] with builder.create_builder_config() as config: config.max_workspace_size = 1 << 50 if STRICT_TYPES: config.set_flag(trt.BuilderFlag.STRICT_TYPES) if args.fp16: config.set_flag(trt.BuilderFlag.FP16) if args.int8: config.set_flag(trt.BuilderFlag.INT8) profile = builder.create_optimization_profile() config.add_optimization_profile(profile) for i in range(len(input_names)): profile.set_shape(input_names[i], INPUT_SHAPE, INPUT_SHAPE, INPUT_SHAPE) engine = builder.build_engine(network, config) # serialize_engine and store in file (can be directly loaded and deserialized): with open(engine_name, "wb") as f: f.write(engine.serialize()) # run inference with TRT def model_infer(inputs, context, d_inputs, h_output0, h_output1, d_output0, d_output1, stream): input_ids = np.asarray(inputs["input_ids"], dtype=np.int32) attention_mask = np.asarray(inputs["attention_mask"], dtype=np.int32) token_type_ids = np.asarray(inputs["token_type_ids"], dtype=np.int32) # Copy inputs cuda.memcpy_htod_async(d_inputs[0], input_ids.ravel(), stream) cuda.memcpy_htod_async(d_inputs[1], attention_mask.ravel(), stream) cuda.memcpy_htod_async(d_inputs[2], token_type_ids.ravel(), stream) # start time start_time = time.time() # Run inference context.execute_async( bindings=[int(d_inp) for d_inp in d_inputs] + [int(d_output0), int(d_output1)], stream_handle=stream.handle ) # Transfer predictions back from GPU cuda.memcpy_dtoh_async(h_output0, d_output0, stream) cuda.memcpy_dtoh_async(h_output1, d_output1, stream) # Synchronize the stream and take time stream.synchronize() # end time end_time = time.time() infer_time = end_time - start_time outputs = (h_output0, h_output1) # print(outputs) return outputs, infer_time # Initialize the accelerator. We will let the accelerator handle device placement for us in this example. accelerator = Accelerator() # Make one log on every process with the configuration for debugging. logging.basicConfig( format="%(asctime)s - %(levelname)s - %(name)s - %(message)s", datefmt="%m/%d/%Y %H:%M:%S", level=logging.INFO, ) # Setup logging, we only want one process per machine to log things on the screen. # accelerator.is_local_main_process is only True for one process per machine. logger.setLevel(logging.INFO if accelerator.is_local_main_process else logging.ERROR) if accelerator.is_local_main_process: datasets.utils.logging.set_verbosity_warning() transformers.utils.logging.set_verbosity_info() else: datasets.utils.logging.set_verbosity_error() transformers.utils.logging.set_verbosity_error() # If passed along, set the training seed now. if args.seed is not None: set_seed(args.seed) # Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below) # or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/ # (the dataset will be downloaded automatically from the datasets Hub). # # For CSV/JSON files, this script will use the column called 'text' or the first column if no column called # 'text' is found. You can easily tweak this behavior (see below). if args.dataset_name is not None: # Downloading and loading a dataset from the hub. raw_datasets = load_dataset(args.dataset_name, args.dataset_config_name) else: raise ValueError("Evaluation requires a dataset name") # See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at # https://huggingface.co/docs/datasets/loading_datasets.html. # Preprocessing the datasets. # Preprocessing is slighlty different for training and evaluation. column_names = raw_datasets["validation"].column_names question_column_name = "question" if "question" in column_names else column_names[0] context_column_name = "context" if "context" in column_names else column_names[1] answer_column_name = "answers" if "answers" in column_names else column_names[2] # Padding side determines if we do (question|context) or (context|question). pad_on_right = tokenizer.padding_side == "right" if args.max_seq_length > tokenizer.model_max_length: logger.warning( f"The max_seq_length passed ({args.max_seq_length}) is larger than the maximum length for the" f"model ({tokenizer.model_max_length}). Using max_seq_length={tokenizer.model_max_length}." ) max_seq_length = min(args.max_seq_length, tokenizer.model_max_length) # Validation preprocessing def prepare_validation_features(examples): # Some of the questions have lots of whitespace on the left, which is not useful and will make the # truncation of the context fail (the tokenized question will take a lots of space). So we remove that # left whitespace examples[question_column_name] = [q.lstrip() for q in examples[question_column_name]] # Tokenize our examples with truncation and maybe padding, but keep the overflows using a stride. This results # in one example possible giving several features when a context is long, each of those features having a # context that overlaps a bit the context of the previous feature. tokenized_examples = tokenizer( examples[question_column_name if pad_on_right else context_column_name], examples[context_column_name if pad_on_right else question_column_name], truncation="only_second" if pad_on_right else "only_first", max_length=max_seq_length, stride=args.doc_stride, return_overflowing_tokens=True, return_offsets_mapping=True, padding="max_length", ) # Since one example might give us several features if it has a long context, we need a map from a feature to # its corresponding example. This key gives us just that. sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping") # For evaluation, we will need to convert our predictions to substrings of the context, so we keep the # corresponding example_id and we will store the offset mappings. tokenized_examples["example_id"] = [] for i in range(len(tokenized_examples["input_ids"])): # Grab the sequence corresponding to that example (to know what is the context and what is the question). sequence_ids = tokenized_examples.sequence_ids(i) context_index = 1 if pad_on_right else 0 # One example can give several spans, this is the index of the example containing this span of text. sample_index = sample_mapping[i] tokenized_examples["example_id"].append(examples["id"][sample_index]) # Set to None the offset_mapping that are not part of the context so it's easy to determine if a token # position is part of the context or not. tokenized_examples["offset_mapping"][i] = [ (o if sequence_ids[k] == context_index else None) for k, o in enumerate(tokenized_examples["offset_mapping"][i]) ] return tokenized_examples eval_examples = raw_datasets["validation"] # Validation Feature Creation eval_dataset = eval_examples.map( prepare_validation_features, batched=True, num_proc=args.preprocessing_num_workers, remove_columns=column_names, load_from_cache_file=not args.overwrite_cache, desc="Running tokenizer on validation dataset", ) data_collator = default_data_collator eval_dataset_for_model = eval_dataset.remove_columns(["example_id", "offset_mapping"]) eval_dataloader = DataLoader( eval_dataset_for_model, collate_fn=data_collator, batch_size=args.per_device_eval_batch_size ) # Post-processing: def post_processing_function(examples, features, predictions, stage="eval"): # Post-processing: we match the start logits and end logits to answers in the original context. predictions = postprocess_qa_predictions( examples=examples, features=features, predictions=predictions, version_2_with_negative=args.version_2_with_negative, n_best_size=args.n_best_size, max_answer_length=args.max_answer_length, null_score_diff_threshold=args.null_score_diff_threshold, output_dir=args.output_dir, prefix=stage, ) # Format the result to the format the metric expects. if args.version_2_with_negative: formatted_predictions = [ {"id": k, "prediction_text": v, "no_answer_probability": 0.0} for k, v in predictions.items() ] else: formatted_predictions = [{"id": k, "prediction_text": v} for k, v in predictions.items()] references = [{"id": ex["id"], "answers": ex[answer_column_name]} for ex in examples] return EvalPrediction(predictions=formatted_predictions, label_ids=references) metric = load_metric("squad_v2" if args.version_2_with_negative else "squad") # Evaluation! logger.info("Loading ONNX model %s for evaluation", args.onnx_model_path) with open(engine_name, "rb") as f, trt.Runtime(TRT_LOGGER) as runtime, runtime.deserialize_cuda_engine( f.read() ) as engine, engine.create_execution_context() as context: # setup for TRT inferrence for i in range(len(input_names)): context.set_binding_shape(i, INPUT_SHAPE) assert context.all_binding_shapes_specified def binding_nbytes(binding): return trt.volume(engine.get_binding_shape(binding)) * engine.get_binding_dtype(binding).itemsize # Allocate device memory for inputs and outputs. d_inputs = [cuda.mem_alloc(binding_nbytes(binding)) for binding in engine if engine.binding_is_input(binding)] # Allocate output buffer h_output0 = cuda.pagelocked_empty(tuple(context.get_binding_shape(3)), dtype=np.float32) h_output1 = cuda.pagelocked_empty(tuple(context.get_binding_shape(4)), dtype=np.float32) d_output0 = cuda.mem_alloc(h_output0.nbytes) d_output1 = cuda.mem_alloc(h_output1.nbytes) # Create a stream in which to copy inputs/outputs and run inference. stream = cuda.Stream() # Evaluation logger.info("***** Running Evaluation *****") logger.info(f" Num examples = {len(eval_dataset)}") logger.info(f" Batch size = {args.per_device_eval_batch_size}") total_time = 0.0 niter = 0 start_time = timeit.default_timer() all_preds = None for step, batch in enumerate(eval_dataloader): outputs, infer_time = model_infer(batch, context, d_inputs, h_output0, h_output1, d_output0, d_output1, stream) total_time += infer_time niter += 1 start_logits, end_logits = outputs start_logits = torch.tensor(start_logits) end_logits = torch.tensor(end_logits) # necessary to pad predictions and labels for being gathered start_logits = accelerator.pad_across_processes(start_logits, dim=1, pad_index=-100) end_logits = accelerator.pad_across_processes(end_logits, dim=1, pad_index=-100) logits = (accelerator.gather(start_logits).cpu().numpy(), accelerator.gather(end_logits).cpu().numpy()) all_preds = logits if all_preds is None else nested_concat(all_preds, logits, padding_index=-100) if all_preds is not None: all_preds = nested_truncate(all_preds, len(eval_dataset)) evalTime = timeit.default_timer() - start_time logger.info(" Evaluation done in total %f secs (%f sec per example)", evalTime, evalTime / len(eval_dataset)) # Inference time from TRT logger.info("Average Inference Time = {:.3f} ms".format(total_time * 1000 / niter)) logger.info("Total Inference Time = {:.3f} ms".format(total_time * 1000)) logger.info("Total Number of Inference = %d", niter) prediction = post_processing_function(eval_examples, eval_dataset, all_preds) eval_metric = metric.compute(predictions=prediction.predictions, references=prediction.label_ids) logger.info(f"Evaluation metrics: {eval_metric}")