# Use an official Python runtime as a parent image
FROM python:3.8-slim-buster

# Set the working directory in the container
WORKDIR /app

# Install system and Python dependencies
RUN apt-get update && \
    apt-get install -y build-essential openslide-tools libgl1-mesa-glx && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*

# Add a non-root user with a specified UID
ARG USER_ID
RUN adduser --disabled-password --gecos '' --uid $USER_ID myuser

# Copy the entire genomic_plip_model directory contents into the container at /app
COPY ./ /app/

# Install Python dependencies
RUN pip install -r requirements.txt

# Set the user to the newly created non-root user
USER myuser

# Expose a port (if necessary for your application)
EXPOSE 8888

# Set the entrypoint to a shell command
ENTRYPOINT ["/bin/bash"]