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059652f |
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Residue conformations -------------------------------------------
A2 : G C3p_endo anti
A3 : G C3p_endo anti
A4 : U C3p_endo anti
A5 : A C3p_endo anti
A6 : A C3p_exo anti
A7 : U C2p_endo anti
A8 : A C2p_endo anti
A9 : A O4p_endo anti
A10 : G C3p_endo anti
A11 : C C2p_exo anti
A12 : U C3p_endo anti
A13 : C C3p_endo anti
B18 : G C3p_endo anti
B19 : A C3p_endo anti
B20 : G C3p_endo anti
B21 : U C3p_endo anti
B22 : A C3p_endo anti
B23 : C C3p_endo anti
B24 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A3-A4 : adjacent_5p upward
A5-A6 : adjacent_5p upward
A8-A9 : adjacent_5p upward
A9-A10 : adjacent_5p upward pairing
A12-A13 : adjacent_5p upward
B18-B19 : adjacent_5p upward
B19-B20 : adjacent_5p upward
B20-B21 : adjacent_5p upward
B22-B23 : adjacent_5p upward pairing
B23-B24 : adjacent_5p upward
Non-Adjacent stackings ------------------------------------------
Number of stackings = 10
Number of adjacent stackings = 10
Number of non adjacent stackings = 0
Base-pairs ------------------------------------------------------
A2-B24 : G-C Ww/Ww pairing antiparallel cis XIX
A3-B23 : G-C Ww/Ww pairing antiparallel cis
A4-B22 : U-A Ws/Wh pairing antiparallel cis one_hbond 46
A7-A8 : U-A O2P/Bh O2P/Hh adjacent_5p pairing
A9-A10 : A-G O2'/C8 adjacent_5p upward pairing
A10-B21 : G-U Ww/Ws pairing antiparallel cis XXVIII
A11-B20 : C-G Ww/Ww pairing antiparallel cis XIX
A12-B19 : U-A Ww/Ww pairing antiparallel cis XX
A13-B18 : C-G Ww/Ww pairing antiparallel cis XIX
B22-B23 : A-C O2P/Bh adjacent_5p upward pairing
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