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README.md
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---
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library_name: timm
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license: cc-by-4.0
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pipeline_tag: image-feature-extraction
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tags:
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- radiology
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- medical-imaging
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- xray
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- ct
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- mri
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- ultrasound
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- foundation-model
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- vision-transformer
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- self-supervised
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- dino
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- dinov2
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model-index:
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- name: OmniRad-base
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results:
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- task:
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type: image-feature-extraction
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dataset:
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name: RadImageNet
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type: radimagenet
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metrics:
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- name: Representation learning
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type: other
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value: "Self-supervised pretrained encoder"
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---
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# OmniRad: A General-Purpose Radiological Foundation Model
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<!--
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[📄 Paper](https://arxiv.org/abs/XXXX.XXXXX) |
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-->
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[💻 Code](https://github.com/unica-visual-intelligence-lab/OmniRad)
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**OmniRad** is a **self-supervised radiological foundation model** designed to learn **stable, transferable, and task-agnostic visual representations** for medical imaging. It is pretrained on large-scale, heterogeneous radiological data and intended for reuse across **classification**, **segmentation**, and **exploratory vision–language** tasks without task-specific pretraining.
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This repository provides the **OmniRad-base** variant, a compact Vision Transformer encoder that offers an excellent trade-off between computational efficiency and representational power.
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---
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## Key Features
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- **Radiology-focused foundation model** pretrained on >1M radiological images
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- **Self-supervised learning** based on a customized DINOv2 framework
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- **Task-agnostic encoder** reusable across classification, segmentation, and multimodal pipelines
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- **Strong transferability** across modalities (CT, MRI, X-ray, ultrasound)
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- **Radiomics-oriented design**, emphasizing representation stability and reuse
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---
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## Example Usage: Feature Extraction
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```python
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from PIL import Image
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from torchvision import transforms
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import timm
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import torch
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# Load OmniRad-base from Hugging Face Hub
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model = timm.create_model(
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"hf_hub:Snarcy/OmniRad-base",
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pretrained=True,
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num_classes=0 # return embeddings
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)
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model.eval()
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device = "cuda" if torch.cuda.is_available() else "cpu"
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model.to(device)
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# Preprocessing
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transform = transforms.Compose([
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transforms.Resize((224, 224)),
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transforms.ToTensor(),
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transforms.Normalize(
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mean=[0.485, 0.456, 0.406],
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std=[0.229, 0.224, 0.225],
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),
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])
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# Load image
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image = Image.open("path/to/radiology_image.png").convert("RGB")
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x = transform(image).unsqueeze(0).to(device)
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# Extract features
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with torch.no_grad():
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embedding = model(x) # shape: [1, 384]
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```
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---
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## Available Downstream Code
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The **official OmniRad repository** provides **end-to-end implementations** for all evaluated downstream tasks:
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👉 **https://github.com/unica-visual-intelligence-lab/OmniRad**
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Including:
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- **Image-level classification** (MedMNIST v2 benchmarks)
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- **Dense medical image segmentation** (MedSegBench, frozen encoder + lightweight decoders)
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- **Radiological image captioning** (BART-based vision–language framework)
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- Full training, evaluation, and ablation scripts
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- Reproducible experimental configurations matching the paper
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---
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## Model Details
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- **Architecture:** Vision Transformer (ViT-B)
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- **Patch size:** 14
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- **Embedding dimension:** 768
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- **Pretraining framework:** Modified DINOv2 (global crops only)
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- **Pretraining dataset:** RadImageNet (~1.2M radiological images)
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- **Input resolution:** 224 × 224
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- **Backbone type:** Encoder-only (no task-specific heads)
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### Pretraining Notes
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- Local crops are removed to improve training stability and downstream transferability
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- No feature collapse observed during training
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- Same hyperparameter configuration used across small and base variants
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- Designed to support frozen-backbone adaptation and lightweight fine-tuning
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---
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## Intended Use
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OmniRad is intended as a **general-purpose radiological image encoder** for:
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- Image-level classification (e.g., disease or organ recognition)
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- Dense prediction (e.g., medical image segmentation via adapters or decoders)
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- Radiomics feature extraction
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- Representation transfer across datasets, modalities, and institutions
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- Exploratory vision–language research (e.g., radiological image captioning)
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**Not intended for direct clinical deployment without task-specific validation.**
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---
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## License
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This project and the released model weights are licensed under the Creative Commons
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Attribution 4.0 International (CC BY 4.0) license.
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<div align="center">
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**Made with ❤️ by [UNICA Visual Intelligence Lab](https://github.com/unica-visual-intelligence-lab)**
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</div>
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