{ "cells": [ { "cell_type": "markdown", "metadata": { "id": "eiQ3FKJDhBW0" }, "source": [ "NLP EXERCISE: TEXT-CLASSIFICATION ON A DRUG DATASET.\n", "\n", "DATA WRANGLING, FINE-TUNING AND PUSHING THE MODEL TO THE HUGGING-FACE HUB" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "id": "HedrkDuchBW2" }, "outputs": [], "source": [ "#let's install the necessary libraries from Hugging Face\n", "!pip install datasets evaluate transformers[sentencepiece] transformers[torch]" ] }, { "cell_type": "code", "source": [ "from huggingface_hub import notebook_login\n", "#authenticate into the huggin face\n", "notebook_login()" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/", "height": 145, "referenced_widgets": [ "d02e8f7bdeb145d4bae8ebcbceab2e72", "6db4a180376840d6aa8e38c46033cc93", "893c0a9c9b51450d99c360a44aee61d4", "3def0a68df05423baf2effef91ff64d0", "3b78ea24be0c42ea8074a48ae4671e12", "50b3cf9cb0c742f2907423f456e9863f", "d252a4002a8d434db262f5056860c5c9", "319deda6147e44ac9e1f53a75f6fdd41", "bfe9fdcac47c4ba8b26b54a8d588afd7", "ba29ea12a9ce4a099992df57d4b851c2", "c5bb554a9f0e4b9b8178a25ed1fb1344", "9d6442503c794161bf927884aaac959e", "69f29945f16842d3bffea0b0dd50921e", "948a520ec0e742868f2f61f00c329f0f", "b9d706620bf24817b391cd76ee0a0866", "a536259beed540aabdabbe694515eb56", "b5089fdb55134b7a840d882b2488b658", "2d7b18bfad5c45ccbce5edbc8adc364c", "4515e7be5a5d4e0a83e7d3717eebe626", "0ac78e74c26044faa5a484cf5e658856", "a9cc217968cb447e875c25a60472bfea", "4e2105e83c4743428555be2aa7f4076e", "1160eec48195412ab7f7f9d29dcf4673", "6b1e242e660649f0b00d75c419569e25", "04c5b7bde3b840919d3ad3e1e04f7c6f", "9fffc2e7f3654cc3addfe5a786d32620", "120d065f31614ae395a30f3fdadf5b79", "dd54337179ed44fca73911f7177896a7", "fc4149e666d940fead7acb14b6ed0ff7", "da5f42f0817e407bbd9cb7001970d92b", "2d508ef9a1304e40b725c03774c4a8d6", "241d70158ae740f0ba73be9f2b633801" ] }, "id": "Z4IolwVzaQQh", "outputId": "c5901a51-7f5f-4ad9-b90d-0cbb1b8c381a" }, "execution_count": 2, "outputs": [ { "output_type": "display_data", "data": { "text/plain": [ "VBox(children=(HTML(value='
] 41.00M 37.7MB/s in 1.1s \n", "\n", "2024-04-30 14:10:47 (37.7 MB/s) - ‘drugsCom_raw.zip’ saved [42989872]\n", "\n", "Archive: drugsCom_raw.zip\n", " inflating: drugsComTest_raw.tsv \n", " inflating: drugsComTrain_raw.tsv \n" ] } ] }, { "cell_type": "code", "source": [ "from datasets import load_dataset\n", "\n", "#save the data into a csv file with both splits\n", "data_files = {\"train\": \"drugsComTrain_raw.tsv\", \"test\": \"drugsComTest_raw.tsv\"}\n", "# \\t is the tab character in Python\n", "drug_dataset = load_dataset(\"csv\", data_files=data_files, delimiter=\"\\t\")\n", "\n", "drug_dataset" ], "metadata": { "id": "yifIkdVzj1kS", "colab": { "base_uri": "https://localhost:8080/", "height": 258, "referenced_widgets": [ "4513ab68f3634e56946c81612a31da0e", "383098fd04ed4c6c9ca939bd55db8794", "9676cf2dc3074073a61be1c633d3d297", "e9a050291a3a436899ed9fbd382f5213", "dcf2f70dc8ae4965bfe295f256c18704", "29cb1dfe444d410883fb64c84c026986", "0bd895bfb6604104968b80a7b4f95471", "b8fb6f60e8d34baa80894393176f9a23", "996fbbf03072467ca254413783bf36fb", "2cefec492eca472cb0f230bbee3d4a62", "2cebb8ba8cbc4c3789a3a381f3a616f9", "76fa80d167b84f1cb3d87486f5bffaad", "6cb254b015a44940908a0e418ff79cb3", "88a9401e2e9440969f5a62a8b23390ef", "f2abd0aeff8149f79407f413c7b4ec01", "4983cf2517d244e5a46d0f4f2cc7ae15", "1cb1571476c149dab979dd4bcf59039d", "26e9bd4610744f49be02c5cd51e71a74", "ef12ad35b6034b05b081be89be57cc6f", "f5cd68cb37a9436489dcedea2e39434b", "c3ccb6cc377b4bbe8122478cd4782c87", "3cb90df5e2584af3a89c015779c15b5b" ] }, "outputId": "8857fdda-a578-42bd-ce05-86a80b684fac" }, "execution_count": 4, "outputs": [ { "output_type": "display_data", "data": { "text/plain": [ "Generating train split: 0 examples [00:00, ? examples/s]" ], "application/vnd.jupyter.widget-view+json": { "version_major": 2, "version_minor": 0, "model_id": "4513ab68f3634e56946c81612a31da0e" } }, "metadata": {} }, { "output_type": "display_data", "data": { "text/plain": [ "Generating test split: 0 examples [00:00, ? examples/s]" ], "application/vnd.jupyter.widget-view+json": { "version_major": 2, "version_minor": 0, "model_id": "76fa80d167b84f1cb3d87486f5bffaad" } }, "metadata": {} }, { "output_type": "execute_result", "data": { "text/plain": [ "DatasetDict({\n", " train: Dataset({\n", " features: ['Unnamed: 0', 'drugName', 'condition', 'review', 'rating', 'date', 'usefulCount'],\n", " num_rows: 161297\n", " })\n", " test: Dataset({\n", " features: ['Unnamed: 0', 'drugName', 'condition', 'review', 'rating', 'date', 'usefulCount'],\n", " num_rows: 53766\n", " })\n", "})" ] }, "metadata": {}, "execution_count": 4 } ] }, { "cell_type": "code", "source": [ "# Randomize the order of the rows within each split\n", "def randomize_dataset(dataset):\n", " for split in dataset.keys():\n", " shuffled_dataset = dataset[split].shuffle()\n", " dataset[split] = shuffled_dataset\n", " return dataset\n", "\n", "drug_dataset = randomize_dataset(drug_dataset)" ], "metadata": { "id": "5JkAVnitqs1l" }, "execution_count": 5, "outputs": [] }, { "cell_type": "code", "source": [ "#rename columns\n", "drug_dataset = drug_dataset.rename_column(\n", " original_column_name=\"Unnamed: 0\", new_column_name=\"patient_id\"\n", ")\n", "drug_dataset" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/" }, "id": "EOOatck3rwmY", "outputId": "71de605f-e3ea-4080-b86a-adbf29e2728b" }, "execution_count": 6, "outputs": [ { "output_type": "execute_result", "data": { "text/plain": [ "DatasetDict({\n", " train: Dataset({\n", " features: ['patient_id', 'drugName', 'condition', 'review', 'rating', 'date', 'usefulCount'],\n", " num_rows: 161297\n", " })\n", " test: Dataset({\n", " features: ['patient_id', 'drugName', 'condition', 'review', 'rating', 'date', 'usefulCount'],\n", " num_rows: 53766\n", " })\n", "})" ] }, "metadata": {}, "execution_count": 6 } ] }, { "cell_type": "code", "source": [ "#remove rows where the condition feature has no data\n", "drug_dataset = drug_dataset.filter(lambda x: x[\"condition\"] is not None)" ], "metadata": { "id": "cZzYLJphrw6W", "colab": { "base_uri": "https://localhost:8080/", "height": 81, "referenced_widgets": [ "2d17144cc7824d96bd47fb37177c13ea", "ec52abe8b3824ec29bec7d98abe60461", "028f11273bb541a7bfd02860c5385954", "9dbc508a1b8f4246baf13464bc332b5a", "de688474003c4d72b0deffedae510792", "99b9e7cc5b4846faa9db29339844a43f", "10f3a308a3e14df99910a5532843222d", "181be910862d414781f7764b71fa6e27", "43e310819c884fef97cd802d02895b41", "2941d75f5b324080b0f45d03018bc11d", "5168664495884858b3804005791d3fe2", "cd5133bf1421483caf1154a6df4db62f", "ceeda7be27644179bf64f1de4acb6442", "76d1ec13d13541819c2fcdc616565b27", "e8d17a077de6411785e4e5428e338453", "37024c310b144801812992212d269bf6", "97090cdd9720494fb104576a2cce3c4b", "17b242bbdbb145aa856ae43ef994fc72", "5cde1d99879641a7ab81d6dbab536ce3", "cd01967f37c444848adb612f8850a6eb", "51cdb4f17e3743009dd7a62ab6df74aa", "436fd12a5c104bccb45dd4feb6abb4c3" ] }, "outputId": "03a2d67e-c2d4-4226-bf4d-2223526fc617" }, "execution_count": 7, "outputs": [ { "output_type": "display_data", "data": { "text/plain": [ "Filter: 0%| | 0/161297 [00:00 15)\n", "print(drug_dataset.num_rows)" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/", "height": 99, "referenced_widgets": [ "e9b95795aef84bde907d36085fd3b4ea", "7de8256ed0fa426da8a8717a7f9da783", "1ea16a7b25d24639b9af7607060b81a1", "c545d7d5a60541799012276c36e4aabe", "1448ab7f4cfe4b589abb00b8f2b82b2d", "32e4c5eaea2944be8ae2bcb56eac9076", "8f7c0bd075874109a17e1e13b1fa4904", "5b00ccb466a64949938581ff9aa498b4", "ef82e644aec04eacbc6e7de5b160436a", "3d4867c27c5a410c9d541db52ea2f008", "6170285e12c74f40a3b86b33113a958a", "076c64ecd4bf46d7b1eaad6ca2e4b8e5", "720444ec8874437a8f6da2ef3dfd0a82", "ea336bf274e647a89fb0fdf75967c32a", "061b9ea1213b4419b4cbd2ac77953565", "9160601448c44e7c8decd8af94a388ff", "059c0f1167174d789d230489780ac86b", "693998e8503e414191d38e551d1c935f", "d4f972d09d5545b3b9ceb9096b92bff4", "668468f37d5a4db39d571d3b78be1cc3", "0910dafa860c474ca817e69cd833f430", "e755039111454de3a6d65f6e66fec03c" ] }, "id": "qQk-ReJssefI", "outputId": "dacf883d-64b8-4ebc-93f0-e75aab356b5b" }, "execution_count": 11, "outputs": [ { "output_type": "display_data", "data": { "text/plain": [ "Filter: 0%| | 0/159498 [00:00" ], "text/html": [] }, "metadata": {} }, { "output_type": "display_data", "data": { "text/plain": [ "Downloading builder script: 0%| | 0.00/4.20k [00:00" ], "text/html": [ "\n", "
\n", " \n", " \n", " [40170/40170 1:12:01, Epoch 3/3]\n", "
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EpochTraining LossValidation LossAccuracyPrecisionRecallF1
10.8469000.8275080.7672830.7685940.7672830.755066
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30.4116000.6678290.8375780.8324820.8375780.831665

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