diff --git "a/config.json" "b/config.json" new file mode 100644--- /dev/null +++ "b/config.json" @@ -0,0 +1,7470 @@ +{ + "main_config": { + "cross_val": true, + "device_number": 1, + "inference": false, + "inference_settings": { + "infere_original_testset": false, + "model_path": "/nfs/home/yat_ldap/VS_Projects/TransfoRNA-Framework/models/tcga/TransfoRNA_FULL/sub_class/Seq/ckpt/model_params_tcga.pt", + "sequences_path": "/data/hbdx_ldap_local/analysis/data/sncRNA/test.h5ad" + }, + "log_embedds": true, + "log_logits": false, + "mapping_dict": { + "12S_bin-1": "rRNA", + "12S_bin-10": "rRNA", + "12S_bin-11": "rRNA", + "12S_bin-12": "rRNA", + "12S_bin-13": "rRNA", + "12S_bin-14": "rRNA", + "12S_bin-20": "rRNA", + "12S_bin-23": "rRNA", + "12S_bin-28": "rRNA", + "12S_bin-3": "rRNA", + "12S_bin-32": "rRNA", + "12S_bin-4": "rRNA", + "12S_bin-8": "rRNA", + "16S_bin-1": "rRNA", + "16S_bin-10": "rRNA", + "16S_bin-12": "rRNA", + "16S_bin-15": "rRNA", + "16S_bin-17": "rRNA", + "16S_bin-19": "rRNA", + "16S_bin-20": "rRNA", + "16S_bin-21": "rRNA", + "16S_bin-23": "rRNA", + "16S_bin-24": "rRNA", + "16S_bin-26": "rRNA", + "16S_bin-27": "rRNA", + "16S_bin-29": "rRNA", + "16S_bin-32": "rRNA", + "16S_bin-34": "rRNA", + "16S_bin-38": "rRNA", + "16S_bin-39": "rRNA", + "16S_bin-41": "rRNA", + "16S_bin-42": "rRNA", + "16S_bin-44": "rRNA", + "16S_bin-46": "rRNA", + "16S_bin-51": "rRNA", + "16S_bin-9": "rRNA", + "18S_bin-1": "rRNA", + "18S_bin-10": "rRNA", + "18S_bin-11": "rRNA", + "18S_bin-12": "rRNA", + "18S_bin-13": "rRNA", + "18S_bin-14": "rRNA", + "18S_bin-15": "rRNA", + "18S_bin-16": "rRNA", + "18S_bin-17": "rRNA", + "18S_bin-18": "rRNA", + "18S_bin-19": "rRNA", + "18S_bin-2": "rRNA", + "18S_bin-20": "rRNA", + "18S_bin-22": "rRNA", + "18S_bin-23": "rRNA", + "18S_bin-24": "rRNA", + "18S_bin-25": "rRNA", + "18S_bin-26": "rRNA", + "18S_bin-27": "rRNA", + "18S_bin-28": "rRNA", + "18S_bin-29": "rRNA", + "18S_bin-3": "rRNA", + "18S_bin-30": "rRNA", + "18S_bin-31": "rRNA", + "18S_bin-32": 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"snoDB0091_bin-3": "snoRNA", + "snoDB0096_bin-2": "snoRNA", + "snoDB0098_bin-1": "snoRNA", + "snoDB0098_bin-4": "snoRNA", + "snoDB0107_bin-3": "snoRNA", + "snoDB0108_bin-3": "snoRNA", + "snoDB0109_bin-1": "snoRNA", + "snoDB0109_bin-3": "snoRNA", + "snoDB0111_bin-1": "snoRNA", + "snoDB0111_bin-3": "snoRNA", + "snoDB0114_bin-1": "snoRNA", + "snoDB0115_bin-1": "snoRNA", + "snoDB0116_bin-1": "snoRNA", + "snoDB0116_bin-5": "snoRNA", + "snoDB0119_bin-5": "snoRNA", + "snoDB0120_bin-1": "snoRNA", + "snoDB0120_bin-3": "snoRNA", + "snoDB0121_bin-1": "snoRNA", + "snoDB0121_bin-2": "snoRNA", + "snoDB0121_bin-3": "snoRNA", + "snoDB0135_bin-5": "snoRNA", + "snoDB0136_bin-1": "snoRNA", + "snoDB0136_bin-5": "snoRNA", + "snoDB0143_bin-1": "snoRNA", + "snoDB0150_bin-2": "snoRNA", + "snoDB0150_bin-3": "snoRNA", + "snoDB0151_bin-1": "snoRNA", + "snoDB0151_bin-2": "snoRNA", + "snoDB0151_bin-3": "snoRNA", + "snoDB0158_bin-5": "snoRNA", + "snoDB0160_bin-2": "snoRNA", + "snoDB0160_bin-3": "snoRNA", + "snoDB0172_bin-5": "snoRNA", + "snoDB0175_bin-1": "snoRNA", + "snoDB0175_bin-2": "snoRNA", + "snoDB0175_bin-3": "snoRNA", + "snoDB0179_bin-4": "snoRNA", + "snoDB0180_bin-1": "snoRNA", + "snoDB0180_bin-2": "snoRNA", + "snoDB0180_bin-3": "snoRNA", + "snoDB0188_bin-1": "snoRNA", + "snoDB0188_bin-5": "snoRNA", + "snoDB0194_bin-1": "snoRNA", + "snoDB0194_bin-5": "snoRNA", + "snoDB0206_bin-1": "snoRNA", + "snoDB0210_bin-3": "snoRNA", + "snoDB0226_bin-1": "snoRNA", + "snoDB0235_bin-1": "snoRNA", + "snoDB0243_bin-2": "snoRNA", + "snoDB0243_bin-3": "snoRNA", + "snoDB0254_bin-1": "snoRNA", + "snoDB0254_bin-2": "snoRNA", + "snoDB0254_bin-3": "snoRNA", + "snoDB0255_bin-1": "snoRNA", + "snoDB0255_bin-2": "snoRNA", + "snoDB0255_bin-3": "snoRNA", + "snoDB0262_bin-1": "snoRNA", + "snoDB0262_bin-2": "snoRNA", + "snoDB0262_bin-3": "snoRNA", + "snoDB0273_bin-4": "snoRNA", + "snoDB0278_bin-1": "snoRNA", + "snoDB0278_bin-3": "snoRNA", + "snoDB0279_bin-1": "snoRNA", + "snoDB0279_bin-2": "snoRNA", + "snoDB0279_bin-3": "snoRNA", + "snoDB0280_bin-5": "snoRNA", + "snoDB0286_bin-1": "snoRNA", + "snoDB0291_bin-1": "snoRNA", + "snoDB0291_bin-3": "snoRNA", + "snoDB0292_bin-1": "snoRNA", + "snoDB0297_bin-1": "snoRNA", + "snoDB0297_bin-2": "snoRNA", + "snoDB0298_bin-1": "snoRNA", + "snoDB0304_bin-1": "snoRNA", + "snoDB0304_bin-3": "snoRNA", + "snoDB0313_bin-5": "snoRNA", + "snoDB0317_bin-5": "snoRNA", + "snoDB0319_bin-5": "snoRNA", + "snoDB0342_bin-1": "snoRNA", + "snoDB0342_bin-2": "snoRNA", + "snoDB0342_bin-3": "snoRNA", + "snoDB0348_bin-3": "snoRNA", + "snoDB0349_bin-1": "snoRNA", + "snoDB0349_bin-3": "snoRNA", + "snoDB0374_bin-1": "snoRNA", + "snoDB0377_bin-1": "snoRNA", + "snoDB0377_bin-2": "snoRNA", + "snoDB0377_bin-3": "snoRNA", + "snoDB0379_bin-5": "snoRNA", + "snoDB0382_bin-5": "snoRNA", + "snoDB0384_bin-5": "snoRNA", + "snoDB0395_bin-4": "snoRNA", + "snoDB0401_bin-5": "snoRNA", + "snoDB0416_bin-1": "snoRNA", + "snoDB0416_bin-3": "snoRNA", + "snoDB0419_bin-1": "snoRNA", + "snoDB0419_bin-2": "snoRNA", + "snoDB0419_bin-3": "snoRNA", + "snoDB0422_bin-3": "snoRNA", + "snoDB0431_bin-3": "snoRNA", + "snoDB0437_bin-2": "snoRNA", + "snoDB0437_bin-3": "snoRNA", + "snoDB0437_bin-4": "snoRNA", + "snoDB0440_bin-1": "snoRNA", + "snoDB0440_bin-3": "snoRNA", + "snoDB0445_bin-3": "snoRNA", + "snoDB0446_bin-1": "snoRNA", + "snoDB0453_bin-1": "snoRNA", + "snoDB0460_bin-1": "snoRNA", + "snoDB0460_bin-2": "snoRNA", + "snoDB0460_bin-3": "snoRNA", + "snoDB0461_bin-3": "snoRNA", + "snoDB0462_bin-3": "snoRNA", + "snoDB0462_bin-5": "snoRNA", + "snoDB0464_bin-5": "snoRNA", + "snoDB0465_bin-1": "snoRNA", + "snoDB0465_bin-2": "snoRNA", + "snoDB0465_bin-3": "snoRNA", + "snoDB0466_bin-1": "snoRNA", + "snoDB0466_bin-5": "snoRNA", + "snoDB0475_bin-1": "snoRNA", + "snoDB0475_bin-2": "snoRNA", + "snoDB0475_bin-3": "snoRNA", + "snoDB0476_bin-1": "snoRNA", + "snoDB0476_bin-3": "snoRNA", + "snoDB0477_bin-1": "snoRNA", + "snoDB0477_bin-5": "snoRNA", + "snoDB0478_bin-1": "snoRNA", + "snoDB0478_bin-5": "snoRNA", + "snoDB0481_bin-5": "snoRNA", + "snoDB0484_bin-5": "snoRNA", + "snoDB0485_bin-1": "snoRNA", + "snoDB0485_bin-2": "snoRNA", + "snoDB0485_bin-3": "snoRNA", + "snoDB0487_bin-1": "snoRNA", + "snoDB0487_bin-3": "snoRNA", + "snoDB0488_bin-1": "snoRNA", + "snoDB0488_bin-2": "snoRNA", + "snoDB0488_bin-3": "snoRNA", + "snoDB0489_bin-1": "snoRNA", + "snoDB0489_bin-2": "snoRNA", + "snoDB0489_bin-3": "snoRNA", + "snoDB0490_bin-1": "snoRNA", + "snoDB0490_bin-2": "snoRNA", + "snoDB0490_bin-3": "snoRNA", + "snoDB0492_bin-5": "snoRNA", + "snoDB0501_bin-1": "snoRNA", + "snoDB0501_bin-5": "snoRNA", + "snoDB0502_bin-5": "snoRNA", + "snoDB0515_bin-3": "snoRNA", + "snoDB0522_bin-1": "snoRNA", + "snoDB0522_bin-5": "snoRNA", + "snoDB0538_bin-5": "snoRNA", + "snoDB0555_bin-8": "snoRNA", + "snoDB0555_bin-9": "snoRNA", + "snoDB0561_bin-1": "snoRNA", + "snoDB0561_bin-3": "snoRNA", + "snoDB0562_bin-11": "snoRNA", + "snoDB0563_bin-5": "snoRNA", + "snoDB0570_bin-1": "snoRNA", + "snoDB0570_bin-3": "snoRNA", + "snoDB0580_bin-1": "snoRNA", + "snoDB0585_bin-1": "snoRNA", + "snoDB0586_bin-1": "snoRNA", + "snoDB0592_bin-1": "snoRNA", + "snoDB0598_bin-1": "snoRNA", + "snoDB0602_bin-2": "snoRNA", + "snoDB0602_bin-3": "snoRNA", + "snoDB0603_bin-1": "snoRNA", + "snoDB0603_bin-4": "snoRNA", + "snoDB0607_bin-1": "snoRNA", + "snoDB0607_bin-3": "snoRNA", + "snoDB0610_bin-3": "snoRNA", + "snoDB0612_bin-1": "snoRNA", + "snoDB0613_bin-3": "snoRNA", + "snoDB0614_bin-1": "snoRNA", + "snoDB0614_bin-3": "snoRNA", + "snoDB0615_bin-1": "snoRNA", + "snoDB0615_bin-2": "snoRNA", + "snoDB0615_bin-3": "snoRNA", + "snoDB0616_bin-1": "snoRNA", + "snoDB0616_bin-3": "snoRNA", + "snoDB0617_bin-1": "snoRNA", + "snoDB0617_bin-2": "snoRNA", + "snoDB0617_bin-3": "snoRNA", + "snoDB0619_bin-1": "snoRNA", + "snoDB0619_bin-2": "snoRNA", + "snoDB0619_bin-3": "snoRNA", + "snoDB0620_bin-3": "snoRNA", + "snoDB0625_bin-1": "snoRNA", + "snoDB0625_bin-2": "snoRNA", + "snoDB0626_bin-2": "snoRNA", + "snoDB0627_bin-3": "snoRNA", + "snoDB0628_bin-1": "snoRNA", + "snoDB0628_bin-2": "snoRNA", + "snoDB0628_bin-3": "snoRNA", + "snoDB0629_bin-3": "snoRNA", + "snoDB0630_bin-2": "snoRNA", + "snoDB0630_bin-3": "snoRNA", + "snoDB0631_bin-2": "snoRNA", + "snoDB0633_bin-2": "snoRNA", + "snoDB0633_bin-3": "snoRNA", + "snoDB0639_bin-1": "snoRNA", + "snoDB0639_bin-3": "snoRNA", + "snoDB0640_bin-2": "snoRNA", + "snoDB0641_bin-1": "snoRNA", + "snoDB0641_bin-2": "snoRNA", + "snoDB0641_bin-3": "snoRNA", + "snoDB0642_bin-2": "snoRNA", + "snoDB0642_bin-3": "snoRNA", + "snoDB0643_bin-2": "snoRNA", + "snoDB0644_bin-2": "snoRNA", + "snoDB0645_bin-1": "snoRNA", + "snoDB0645_bin-2": "snoRNA", + "snoDB0645_bin-3": "snoRNA", + "snoDB0647_bin-2": "snoRNA", + "snoDB0648_bin-1": "snoRNA", + "snoDB0663_bin-1": "snoRNA", + "snoDB0666_bin-1": "snoRNA", + "snoDB0668_bin-1": "snoRNA", + "snoDB0668_bin-3": "snoRNA", + "snoDB0669_bin-1": "snoRNA", + "snoDB0669_bin-3": "snoRNA", + "snoDB0671_bin-1": "snoRNA", + "snoDB0676_bin-1": "snoRNA", + "snoDB0682_bin-4": "snoRNA", + "snoDB0684_bin-1": "snoRNA", + "snoDB0687_bin-4": "snoRNA", + "snoDB0691_bin-1": "snoRNA", + "snoDB0691_bin-4": "snoRNA", + "snoDB0692_bin-1": "snoRNA", + "snoDB0693_bin-1": "snoRNA", + "snoDB0694_bin-1": "snoRNA", + "snoDB0701_bin-3": "snoRNA", + "snoDB0703_bin-1": "snoRNA", + "snoDB0703_bin-2": "snoRNA", + "snoDB0703_bin-3": "snoRNA", + "snoDB0708_bin-1": "snoRNA", + "snoDB0708_bin-3": "snoRNA", + "snoDB0711_bin-3": "snoRNA", + "snoDB0715_bin-1": "snoRNA", + "snoDB0719_bin-1": "snoRNA", + "snoDB0742_bin-1": "snoRNA", + "snoDB0748_bin-2": "snoRNA", + "snoDB0771_bin-3": "snoRNA", + "snoDB0771_bin-5": "snoRNA", + "snoDB0776_bin-5": "snoRNA", + "snoDB0790_bin-2": "snoRNA", + "snoDB0790_bin-3": "snoRNA", + "snoDB0791_bin-1": "snoRNA", + "snoDB0791_bin-4": "snoRNA", + "snoDB0795_bin-1": "snoRNA", + "snoDB0795_bin-2": "snoRNA", + "snoDB0801_bin-3": "snoRNA", + "snoDB0801_bin-5": "snoRNA", + "snoDB0803_bin-1": "snoRNA", + "snoDB0803_bin-3": "snoRNA", + "snoDB0805_bin-1": "snoRNA", + "snoDB0809_bin-3": "snoRNA", + "snoDB0810_bin-1": "snoRNA", + "snoDB0810_bin-3": "snoRNA", + "snoDB0811_bin-3": "snoRNA", + "snoDB0818_bin-3": "snoRNA", + "snoDB0820_bin-5": "snoRNA", + "snoDB0822_bin-1": "snoRNA", + "snoDB0835_bin-1": "snoRNA", + "snoDB0835_bin-5": "snoRNA", + "snoDB0836_bin-1": "snoRNA", + "snoDB0836_bin-5": "snoRNA", + "snoDB0839_bin-2": "snoRNA", + "snoDB0839_bin-3": "snoRNA", + "snoDB0842_bin-3": "snoRNA", + "snoDB0843_bin-1": "snoRNA", + "snoDB0843_bin-2": "snoRNA", + "snoDB0843_bin-3": "snoRNA", + "snoDB0844_bin-3": "snoRNA", + "snoDB0849_bin-1": "snoRNA", + "snoDB0849_bin-2": "snoRNA", + "snoDB0849_bin-3": "snoRNA", + "snoDB0850_bin-1": "snoRNA", + "snoDB0850_bin-2": "snoRNA", + "snoDB0850_bin-3": "snoRNA", + "snoDB0851_bin-1": "snoRNA", + "snoDB0851_bin-2": "snoRNA", + "snoDB0851_bin-3": "snoRNA", + "snoDB0852_bin-3": "snoRNA", + "snoDB0853_bin-3": "snoRNA", + "snoDB0853_bin-4": "snoRNA", + "snoDB0854_bin-1": "snoRNA", + "snoDB0854_bin-2": "snoRNA", + "snoDB0854_bin-3": "snoRNA", + "snoDB0855_bin-2": "snoRNA", + "snoDB0855_bin-3": "snoRNA", + "snoDB0868_bin-1": "snoRNA", + "snoDB0868_bin-3": "snoRNA", + "snoDB0869_bin-1": "snoRNA", + "snoDB0869_bin-3": "snoRNA", + "snoDB0870_bin-1": "snoRNA", + "snoDB0870_bin-3": "snoRNA", + "snoDB0877_bin-2": "snoRNA", + "snoDB0877_bin-6": "snoRNA", + "snoDB0878_bin-1": "snoRNA", + "snoDB0878_bin-3": "snoRNA", + "snoDB0879_bin-5": "snoRNA", + "snoDB0881_bin-1": "snoRNA", + "snoDB0881_bin-3": "snoRNA", + "snoDB0882_bin-1": "snoRNA", + "snoDB0882_bin-2": "snoRNA", + "snoDB0882_bin-3": "snoRNA", + "snoDB0890_bin-3": "snoRNA", + "snoDB0896_bin-7": "snoRNA", + "snoDB0896_bin-8": "snoRNA", + "snoDB0900_bin-1": "snoRNA", + "snoDB0900_bin-3": "snoRNA", + "snoDB0901_bin-3": "snoRNA", + "snoDB0901_bin-4": "snoRNA", + "snoDB0902_bin-1": "snoRNA", + "snoDB0902_bin-3": "snoRNA", + "snoDB0903_bin-1": "snoRNA", + "snoDB0903_bin-3": "snoRNA", + "snoDB0904_bin-5": "snoRNA", + "snoDB0914_bin-1": "snoRNA", + "snoDB0915_bin-1": "snoRNA", + "snoDB0915_bin-4": "snoRNA", + "snoDB0916_bin-1": "snoRNA", + "snoDB0916_bin-3": "snoRNA", + "snoDB0917_bin-1": "snoRNA", + "snoDB0917_bin-2": "snoRNA", + "snoDB0917_bin-3": "snoRNA", + "snoDB0918_bin-1": "snoRNA", + "snoDB0918_bin-3": "snoRNA", + "snoDB0919_bin-1": "snoRNA", + "snoDB0919_bin-3": "snoRNA", + "snoDB0920_bin-1": "snoRNA", + "snoDB0920_bin-3": "snoRNA", + "snoDB0921_bin-1": "snoRNA", + "snoDB0921_bin-3": "snoRNA", + "snoDB0923_bin-1": "snoRNA", + "snoDB0923_bin-2": "snoRNA", + "snoDB0923_bin-3": "snoRNA", + "snoDB0933_bin-1": "snoRNA", + "snoDB0933_bin-3": "snoRNA", + "snoDB0933_bin-4": "snoRNA", + "snoDB0934_bin-1": "snoRNA", + "snoDB0934_bin-3": "snoRNA", + "snoDB0934_bin-4": "snoRNA", + "snoDB0935_bin-1": "snoRNA", + "snoDB0935_bin-3": "snoRNA", + "snoDB0939_bin-2": "snoRNA", + "snoDB0939_bin-3": "snoRNA", + "snoDB0955_bin-2": "snoRNA", + "snoDB0955_bin-3": "snoRNA", + "snoDB0957_bin-2": "snoRNA", + "snoDB0958_bin-5": "snoRNA", + "snoDB0961_bin-3": "snoRNA", + "snoDB0962_bin-1": "snoRNA", + "snoDB0962_bin-3": "snoRNA", + "snoDB0963_bin-8": "snoRNA", + "snoDB0965_bin-2": "snoRNA", + "snoDB0966_bin-1": "snoRNA", + "snoDB0967_bin-1": "snoRNA", + "snoDB0967_bin-3": "snoRNA", + "snoDB0970_bin-1": "snoRNA", + "snoDB0970_bin-12": "snoRNA", + "snoDB0972_bin-1": "snoRNA", + "snoDB0972_bin-5": "snoRNA", + "snoDB0974_bin-1": "snoRNA", + "snoDB0977_bin-1": "snoRNA", + "snoDB0977_bin-3": "snoRNA", + "snoDB0979_bin-3": "snoRNA", + "snoDB0986_bin-1": "snoRNA", + "snoDB0986_bin-2": "snoRNA", + "snoDB0987_bin-3": "snoRNA", + "snoDB0988_bin-3": "snoRNA", + "snoDB0989_bin-1": "snoRNA", + "snoDB0989_bin-2": "snoRNA", + "snoDB0989_bin-3": "snoRNA", + "snoDB0990_bin-1": "snoRNA", + "snoDB0990_bin-2": "snoRNA", + "snoDB0990_bin-3": "snoRNA", + "snoDB0991_bin-1": "snoRNA", + "snoDB0991_bin-3": "snoRNA", + "snoDB0994_bin-1": "snoRNA", + "snoDB0994_bin-3": "snoRNA", + "snoDB0995_bin-1": "snoRNA", + "snoDB0995_bin-2": "snoRNA", + "snoDB0996_bin-1": "snoRNA", + "snoDB0996_bin-2": "snoRNA", + "snoDB0996_bin-3": "snoRNA", + "snoDB1015_bin-1": "snoRNA", + "snoDB1021_bin-1": "snoRNA", + "snoDB1021_bin-3": "snoRNA", + "snoDB1029_bin-7": "snoRNA", + "snoDB1038_bin-1": "snoRNA", + "snoDB1049_bin-1": "snoRNA", + "snoDB1049_bin-2": "snoRNA", + "snoDB1049_bin-3": "snoRNA", + "snoDB1050_bin-1": "snoRNA", + "snoDB1050_bin-2": "snoRNA", + "snoDB1050_bin-3": "snoRNA", + "snoDB1056_bin-8": "snoRNA", + "snoDB1058_bin-1": "snoRNA", + "snoDB1058_bin-3": "snoRNA", + "snoDB1063_bin-5": "snoRNA", + "snoDB1074_bin-1": "snoRNA", + "snoDB1080_bin-1": "snoRNA", + "snoDB1080_bin-2": "snoRNA", + "snoDB1080_bin-3": "snoRNA", + "snoDB1101_bin-1": "snoRNA", + "snoDB1133_bin-1": "snoRNA", + "snoDB1146_bin-1": "snoRNA", + "snoDB1147_bin-1": "snoRNA", + "snoDB1157_bin-1": "snoRNA", + "snoDB1168_bin-1": "snoRNA", + "snoDB1219_bin-1": "snoRNA", + "snoDB1225_bin-2": "snoRNA", + "snoDB1231_bin-3": "snoRNA", + "snoDB1232_bin-1": "snoRNA", + "snoDB1233_bin-3": "snoRNA", + "snoDB1241_bin-1": "snoRNA", + "snoDB1246_bin-1": "snoRNA", + "snoDB1258_bin-1": "snoRNA", + "snoDB1756_bin-3": "snoRNA", + "snoDB2009_bin-3": "snoRNA", + "snoDB2118_bin-3": "snoRNA", + "snoDB2121_bin-10": "snoRNA", + "snoDB2121_bin-7": "snoRNA", + "trailer_tRF__tRNA-Leu-TAG": "tRNA", + "trailer_tRF__tRNA-Thr-CGT": "tRNA", + "trailer_tRF__tRNA-Thr-TGT": "tRNA", + "trailer_tRF__tRNA-Val-TAC": "tRNA" + }, + "model": { + "skorch_model": { + "_target_": "transforna.Net", + "batch_size": 512, + "criterion": "transforna.LossFunction", + "device": "cuda", + "iterator_train__shuffle": true, + "max_epochs": 3000, + "module": "transforna.GeneEmbeddModel", + "optimizer": "torch.optim.AdamW" + } + }, + "model_config": { + "class_mappings": [ + "12S_bin-1", + "12S_bin-10", + "12S_bin-11", + "12S_bin-12", + "12S_bin-13", + "12S_bin-14", + "12S_bin-20", + "12S_bin-23", + "12S_bin-28", + "12S_bin-3", + 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"3p-CCA-tRF__MT-TS", + "3p-CCA-tRF__MT-TV", + "3p-CCA-tRF__MT-TY", + "3p-CCA-tRF__tRNA-Ala-AGC", + "3p-CCA-tRF__tRNA-Ala-CGC", + "3p-CCA-tRF__tRNA-Ala-TGC", + "3p-CCA-tRF__tRNA-Arg-ACG", + "3p-CCA-tRF__tRNA-Arg-TCG", + "3p-CCA-tRF__tRNA-Arg-TCT", + "3p-CCA-tRF__tRNA-Asn-GTT", + "3p-CCA-tRF__tRNA-Asp-GTC", + "3p-CCA-tRF__tRNA-Cys-GCA", + "3p-CCA-tRF__tRNA-Gln-CTG", + "3p-CCA-tRF__tRNA-Gln-TTG", + "3p-CCA-tRF__tRNA-Glu-TTC", + "3p-CCA-tRF__tRNA-Gly-CCC", + "3p-CCA-tRF__tRNA-Gly-GCC", + "3p-CCA-tRF__tRNA-Gly-TCC", + "3p-CCA-tRF__tRNA-His-GTG", + "3p-CCA-tRF__tRNA-Ile-AAT", + "3p-CCA-tRF__tRNA-Leu-CAG", + "3p-CCA-tRF__tRNA-Leu-TAA", + "3p-CCA-tRF__tRNA-Lys-CTT", + "3p-CCA-tRF__tRNA-Lys-TTT", + "3p-CCA-tRF__tRNA-Phe-GAA", + "3p-CCA-tRF__tRNA-SeC-TCA", + "3p-CCA-tRF__tRNA-Ser-CGA", + "3p-CCA-tRF__tRNA-Ser-GCT", + "3p-CCA-tRF__tRNA-Ser-TGA", + "3p-CCA-tRF__tRNA-Thr-AGT", + "3p-CCA-tRF__tRNA-Thr-CGT", + "3p-CCA-tRF__tRNA-Thr-TGT", + "3p-CCA-tRF__tRNA-Trp-CCA", + "3p-CCA-tRF__tRNA-Tyr-GTA", + "3p-CCA-tRF__tRNA-Val-CAC", + "3p-CCA-tRF__tRNA-Val-TAC", + "3p-CCA-tRF__tRNA-iMet-CAT", + "3p-tR-half__MT-TE", + "3p-tR-half__MT-TK", + "3p-tR-half__MT-TP", + "3p-tR-half__MT-TS", + "3p-tR-half__MT-TV", + "3p-tR-half__tRNA-Asp-GTC", + "3p-tR-half__tRNA-Val-TAC", + "3p-tRF__MT-TE", + "3p-tRF__MT-TV", + "3p-tRF__tRNA-Asp-GTC", + "3p-tRF__tRNA-Glu-TTC", + "3p-tRF__tRNA-Phe-GAA", + "45S-18S-head_bin-105", + "45S-18S-head_bin-106", + "45S-18S-head_bin-114", + "45S-18S-head_bin-121", + "45S-18S-head_bin-54", + "45S-18S-head_bin-60", + "45S-18S-head_bin-65", + "45S-18S-head_bin-66", + "45S-18S-head_bin-82", + "45S-18S-head_bin-94", + "45S-inter-18S-5.8S_bin-11", + "45S-inter-18S-5.8S_bin-6", + "45S-inter-5.8S-28S_bin-17", + "45S-inter-5.8S-28S_bin-24", + "5.8S_bin-1", + "5.8S_bin-2", + "5.8S_bin-3", + "5.8S_bin-4", + "5.8S_bin-5", + "5.8S_bin-6", + "5S_bin-1", + "5S_bin-2", + "5S_bin-3", + "5S_bin-4", + "5S_bin-5", + "5p-tR-half__MT-TC", + "5p-tR-half__MT-TI", + "5p-tR-half__MT-TK", + "5p-tR-half__MT-TM", + "5p-tR-half__MT-TS", + "5p-tR-half__MT-TY", + "5p-tR-half__tRNA-Ala-AGC", + "5p-tR-half__tRNA-Ala-CGC", + "5p-tR-half__tRNA-Arg-CCG", + "5p-tR-half__tRNA-Asp-GTC", + "5p-tR-half__tRNA-Cys-GCA", + "5p-tR-half__tRNA-Gln-CTG", + "5p-tR-half__tRNA-Gln-TTG", + "5p-tR-half__tRNA-Glu-CTC", + "5p-tR-half__tRNA-Glu-TTC", + "5p-tR-half__tRNA-Gly-GCC", + "5p-tR-half__tRNA-Gly-TCC", + "5p-tR-half__tRNA-His-GTG", + "5p-tR-half__tRNA-Leu-CAG", + "5p-tR-half__tRNA-Leu-TAG", + "5p-tR-half__tRNA-Lys-CTT", + "5p-tR-half__tRNA-Pro-TGG", + "5p-tR-half__tRNA-SeC-TCA", + "5p-tR-half__tRNA-Ser-GCT", + "5p-tR-half__tRNA-Thr-CGT", + "5p-tR-half__tRNA-Thr-TGT", + "5p-tR-half__tRNA-Val-AAC", + "5p-tR-half__tRNA-Val-CAC", + "5p-tR-half__tRNA-Val-TAC", + "5p-tR-half__tRNA-iMet-CAT", + "5p-tRF__MT-TC", + "5p-tRF__MT-TE", + "5p-tRF__MT-TF", + "5p-tRF__MT-TK", + "5p-tRF__MT-TL", + "5p-tRF__MT-TM", + "5p-tRF__MT-TN", + "5p-tRF__MT-TP", + "5p-tRF__MT-TQ", + "5p-tRF__MT-TS", + "5p-tRF__MT-TT", + "5p-tRF__MT-TV", + "5p-tRF__MT-TY", + "5p-tRF__tRNA-Ala-AGC", + "5p-tRF__tRNA-Ala-CGC", + "5p-tRF__tRNA-Arg-CCG", + "5p-tRF__tRNA-Arg-CCT", + "5p-tRF__tRNA-Arg-TCG", + "5p-tRF__tRNA-Arg-TCT", + "5p-tRF__tRNA-Asp-GTC", + "5p-tRF__tRNA-Cys-GCA", + "5p-tRF__tRNA-Gln-CTG", + "5p-tRF__tRNA-Glu-CTC", + "5p-tRF__tRNA-Glu-TTC", + "5p-tRF__tRNA-Gly-CCC", + "5p-tRF__tRNA-Gly-GCC", + "5p-tRF__tRNA-Gly-TCC", + "5p-tRF__tRNA-His-GTG", + "5p-tRF__tRNA-Ile-AAT", + "5p-tRF__tRNA-Leu-CAA", + "5p-tRF__tRNA-Leu-CAG", + "5p-tRF__tRNA-Leu-TAA", + "5p-tRF__tRNA-Leu-TAG", + "5p-tRF__tRNA-Lys-CTT", + "5p-tRF__tRNA-Lys-TTT", + "5p-tRF__tRNA-Met-CAT", + "5p-tRF__tRNA-Phe-GAA", + "5p-tRF__tRNA-Pro-TGG", + "5p-tRF__tRNA-SeC-TCA", + "5p-tRF__tRNA-Ser-CGA", + "5p-tRF__tRNA-Ser-GCT", + "5p-tRF__tRNA-Ser-TGA", + "5p-tRF__tRNA-Thr-AGT", + "5p-tRF__tRNA-Thr-CGT", + "5p-tRF__tRNA-Thr-TGT", + "5p-tRF__tRNA-Trp-CCA", + "5p-tRF__tRNA-Tyr-GTA", + "5p-tRF__tRNA-Val-AAC", + "5p-tRF__tRNA-Val-CAC", + "5p-tRF__tRNA-Val-TAC", + "5p-tRF__tRNA-iMet-CAT", + "ABCA9-AS1__ENST00000458677.1_bin-1", + "ABCB5__ENST00000406935.5_bin-1", + "ABHD17B__ENST00000333421.7_bin-1", + "ACSF2__ENST00000504945.1_bin-2", + "ACSL3__ENST00000679546.1_bin-2", + "ADGRG1__ENST00000568487.1_bin-13", + "ADK__ENST00000673027.1_bin-2", + "AHNAK__ENST00000378024.9_bin-172", + "ALB__ENST00000510166.5_bin-16", + "ALDH9A1__ENST00000354775.5_bin-67", + "ANKRD17__ENST00000509867.6_bin-252", + "ANXA1__ENST00000376911.1_bin-31", + "AOPEP__ENST00000478473.1_bin-21", + "AOPEP__ENST00000478473.1_bin-22", + "ARHGDIA__ENST00000583791.1_bin-7", + "ARIH1__ENST00000379887.9_bin-2", + "ARL6IP1__ENST00000566391.1_bin-2", + "ARMCX5__ENST00000477663.6_bin-1", + "ARRDC3__ENST00000265138.4_bin-1", + "ASAP3__ENST00000635461.1_bin-35", + "ATAD5__ENST00000321990.5_bin-218", + "ATP1B1__ENST00000687013.1_bin-92", + "ATP5F1A__ENST00000587902.1_bin-5", + "ATP5F1A__ENST00000587902.1_bin-6", + "ATP6V0C__ENST00000568562.1_bin-1", + "ATP6V1A__ENST00000462855.1_bin-2", + 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"VTRNA1-1__ENST00000363120.1_bin-4", + "VTRNA1-2__ENST00000365241.1_bin-3", + "VTRNA2-1__ENST00000602301.2_bin-2", + "WDR74__ENST00000525239.5_bin-1", + "WDR74__ENST00000538098.2_bin-4", + "WDR74__ENST00000538098.2_bin-6", + "WDR74__ENST00000538098.2_bin-7", + "WWC3__ENST00000380861.10_bin-110", + "YWHAQ__ENST00000238081.8_bin-1", + "ZC3HAV1__ENST00000242351.10_bin-218", + "ZC3HAV1__ENST00000242351.10_bin-243", + "ZMYM2__ENST00000382871.3_bin-40", + "ZNF160__ENST00000596388.1_bin-2", + "ZNF263__ENST00000573578.1_bin-36", + "ZNF316__ENST00000382252.6_bin-74", + "ZNF611__ENST00000597566.5_bin-2", + "ZNF888__ENST00000596623.2_bin-3", + "ZYX__ENST00000644791.1_bin-22", + "hypermapper_1022", + "hypermapper_1048", + "hypermapper_106", + "hypermapper_1244", + "hypermapper_1321", + "hypermapper_1340", + "hypermapper_1397", + "hypermapper_1429", + "hypermapper_1439", + "hypermapper_1482", + "hypermapper_1554", + "hypermapper_1579", + "hypermapper_1583", + "hypermapper_1601", + "hypermapper_1684", + "hypermapper_1791", + "hypermapper_1871", + "hypermapper_2048", + "hypermapper_2063", + "hypermapper_316", + "hypermapper_469", + "hypermapper_51", + "hypermapper_5278", + "hypermapper_528", + "hypermapper_53", + "hypermapper_54", + "hypermapper_5463", + "hypermapper_59", + "hypermapper_64", + "hypermapper_681", + "hypermapper_792", + "hypermapper_82", + "hypermapper_826", + "hypermapper_846", + "hypermapper_86", + "hypermapper_919", + "hypermapper_978", + "let-7a-2-3p", + "let-7a-3p", + "let-7a-5p", + "let-7b-5p", + "let-7c-3p", + "let-7c-5p", + "let-7d-3p", + "let-7d-5p", + "let-7e-3p", + "let-7e-5p", + "let-7f-5p", + "let-7g-3p", + "let-7g-5p", + "let-7i-3p", + "let-7i-5p", + "miR-1-3p", + "miR-100-5p", + "miR-101-3p", + "miR-10395-3p", + "miR-10396b-3p", + "miR-10399-5p", + "miR-103a-1-5p", + "miR-103a-2-5p", + "miR-103a-3p", + "miR-105-5p", + "miR-106a-5p", + "miR-106b-3p", + "miR-106b-5p", + "miR-107", + "miR-10a-5p", + "miR-10b-3p", + "miR-10b-5p", + "miR-1179", + "miR-1180-3p", + "miR-1185-1-3p", + "miR-1197", + "miR-122-3p", + "miR-122-5p", + "miR-1224-3p", + "miR-1224-5p", + "miR-1226-3p", + "miR-1229-3p", + "miR-124-3p", + "miR-124-5p", + "miR-1247-5p", + "miR-1249-3p", + "miR-1251-5p", + "miR-125a-3p", + "miR-125a-5p", + "miR-125b-1-3p", + "miR-125b-2-3p", + "miR-125b-5p", + "miR-126-3p", + "miR-126-5p", + "miR-1266-5p", + "miR-127-3p", + "miR-127-5p", + "miR-1270", + "miR-1277-3p", + "miR-128-1-5p", + "miR-128-3p", + "miR-1287-3p", + "miR-1287-5p", + "miR-129-1-3p", + "miR-129-2-3p", + "miR-129-5p", + "miR-1295a", + "miR-1295b-5p", + "miR-1296-5p", + "miR-1298-3p", + "miR-1298-5p", + "miR-1301-3p", + "miR-1305", + "miR-1306-5p", + "miR-1307-3p", + "miR-1307-5p", + "miR-130a-3p", + "miR-130a-5p", + "miR-130b-3p", + "miR-130b-5p", + "miR-132-3p", + "miR-132-5p", + "miR-1323", + "miR-133a-3p", + "miR-134-5p", + "miR-1343-3p", + "miR-135a-2-3p", + "miR-135a-5p", + "miR-135b-3p", + "miR-135b-5p", + "miR-136-3p", + "miR-136-5p", + "miR-137-3p", + "miR-138-5p", + "miR-139-3p", + "miR-139-5p", + "miR-140-3p", + "miR-140-5p", + "miR-141-3p", + "miR-141-5p", + "miR-142-3p", + "miR-142-5p", + "miR-143-3p", + "miR-143-5p", + "miR-144-3p", + "miR-144-5p", + "miR-145-3p", + "miR-145-5p", + "miR-1468-5p", + "miR-146a-5p", + "miR-146b-3p", + "miR-146b-5p", + "miR-148a-3p", + "miR-148a-5p", + "miR-148b-3p", + "miR-149-5p", + "miR-150-5p", + "miR-152-3p", + "miR-153-3p", + "miR-154-3p", + "miR-154-5p", + "miR-155-3p", + "miR-155-5p", + "miR-15a-5p", + "miR-15b-3p", + "miR-15b-5p", + "miR-16-1-3p", + "miR-16-2-3p", + "miR-16-5p", + "miR-17-3p", + "miR-17-5p", + "miR-181a-2-3p", + "miR-181a-3p", + "miR-181a-5p", + "miR-181b-2-3p", + "miR-181b-3p", + "miR-181b-5p", + "miR-181d-5p", + "miR-182-5p", + "miR-183-3p", + "miR-183-5p", + "miR-184", + "miR-1843", + "miR-185-5p", + "miR-186-5p", + "miR-187-3p", + "miR-188-3p", + "miR-18a-3p", + "miR-18a-5p", + "miR-18b-5p", + "miR-190a-5p", + "miR-190b-5p", + "miR-191-3p", + "miR-191-5p", + "miR-192-3p", + "miR-192-5p", + "miR-193a-3p", + "miR-193a-5p", + "miR-193b-3p", + "miR-193b-5p", + "miR-194-3p", + "miR-194-5p", + "miR-195-3p", + "miR-195-5p", + "miR-196a-1-3p", + "miR-199b-5p", + "miR-19a-3p", + "miR-19b-1-5p", + "miR-19b-3p", + "miR-200a-3p", + "miR-200a-5p", + "miR-200b-3p", + "miR-200b-5p", + "miR-200c-3p", + "miR-200c-5p", + "miR-202-3p", + "miR-202-5p", + "miR-203a-3p", + "miR-203b-3p", + "miR-204-3p", + "miR-204-5p", + "miR-205-3p", + "miR-205-5p", + "miR-206", + "miR-20a-3p", + "miR-20a-5p", + "miR-20b-3p", + "miR-20b-5p", + "miR-21-3p", + "miR-21-5p", + "miR-210-3p", + "miR-210-5p", + "miR-211-3p", + "miR-211-5p", + "miR-212-3p", + "miR-212-5p", + "miR-214-3p", + "miR-214-5p", + "miR-215-5p", + "miR-216a-5p", + "miR-216b-5p", + "miR-217-5p", + "miR-218-5p", + "miR-219a-1-3p", + "miR-219a-2-3p", + "miR-219a-5p", + "miR-22-3p", + "miR-22-5p", + "miR-221-3p", + "miR-221-5p", + "miR-222-3p", + "miR-223-3p", + "miR-223-5p", + "miR-2355-3p", + "miR-2355-5p", + "miR-23a-3p", + "miR-23a-5p", + "miR-23b-3p", + "miR-25-3p", + "miR-25-5p", + "miR-2682-5p", + "miR-26a-1-3p", + "miR-26a-2-3p", + "miR-26a-5p", + "miR-26b-3p", + "miR-26b-5p", + "miR-27a-3p", + "miR-27a-5p", + "miR-27b-3p", + "miR-27b-5p", + "miR-296-3p", + "miR-296-5p", + "miR-299-3p", + "miR-299-5p", + "miR-29a-3p", + "miR-29a-5p", + "miR-29b-1-5p", + "miR-29b-2-5p", + "miR-29c-3p", + "miR-29c-5p", + "miR-301a-3p", + "miR-301a-5p", + "miR-301b-3p", + "miR-301b-5p", + "miR-302a-3p", + "miR-302a-5p", + "miR-302b-3p", + "miR-302b-5p", + "miR-302c-3p", + "miR-302c-5p", + "miR-302d-3p", + "miR-302d-5p", + "miR-3065-3p", + "miR-3065-5p", + "miR-3074-5p", + "miR-3085-5p", + "miR-30a-3p", + "miR-30a-5p", + "miR-30b-3p", + "miR-30b-5p", + "miR-30c-1-3p", + "miR-30c-2-3p", + "miR-30d-3p", + "miR-30d-5p", + "miR-30e-3p", + "miR-30e-5p", + "miR-31-3p", + "miR-31-5p", + "miR-3127-5p", + "miR-3170", + "miR-3173-5p", + "miR-3189-3p", + "miR-32-5p", + "miR-3200-3p", + "miR-320a-3p", + "miR-320b", + "miR-320c", + "miR-320d", + "miR-323a-3p", + "miR-323b-3p", + "miR-324-5p", + "miR-326", + "miR-328-3p", + "miR-329-3p", + "miR-330-3p", + "miR-330-5p", + "miR-331-3p", + "miR-335-3p", + "miR-335-5p", + "miR-337-3p", + "miR-338-3p", + "miR-339-3p", + "miR-339-5p", + "miR-33a-5p", + "miR-33b-5p", + "miR-340-3p", + "miR-340-5p", + "miR-342-3p", + "miR-342-5p", + "miR-345-5p", + "miR-346", + "miR-34a-5p", + "miR-34b-3p", + "miR-34c-3p", + "miR-34c-5p", + "miR-3605-3p", + "miR-361-3p", + "miR-361-5p", + "miR-3613-5p", + "miR-362-3p", + "miR-362-5p", + "miR-363-3p", + "miR-365a-5p", + "miR-3662", + "miR-367-3p", + "miR-3677-3p", + "miR-3682-3p", + "miR-369-3p", + "miR-369-5p", + "miR-370-3p", + "miR-370-5p", + "miR-371a-3p", + "miR-371a-5p", + "miR-372-3p", + "miR-373-3p", + "miR-373-5p", + "miR-374a-3p", + "miR-374a-5p", + "miR-374b-3p", + "miR-374b-5p", + "miR-375-3p", + "miR-376a-3p", + "miR-376a-5p", + "miR-376b-3p", + "miR-376c-3p", + "miR-377-3p", + "miR-377-5p", + "miR-378d", + "miR-379-3p", + "miR-379-5p", + "miR-381-3p", + "miR-381-5p", + "miR-382-3p", + "miR-382-5p", + "miR-383-5p", + "miR-3912-3p", + "miR-3928-3p", + "miR-3934-3p", + "miR-3934-5p", + "miR-3940-5p", + "miR-409-3p", + "miR-409-5p", + "miR-410-3p", + "miR-410-5p", + "miR-411-3p", + "miR-411-5p", + "miR-412-5p", + "miR-421", + "miR-423-3p", + "miR-423-5p", + "miR-424-3p", + "miR-424-5p", + "miR-425-3p", + "miR-425-5p", + "miR-429", + "miR-431-3p", + "miR-431-5p", + "miR-432-3p", + "miR-432-5p", + "miR-433-3p", + "miR-433-5p", + "miR-4440", + "miR-4484", + "miR-4491", + "miR-449a", + "miR-450a-5p", + "miR-450b-5p", + "miR-451a", + "miR-452-5p", + "miR-454-3p", + "miR-454-5p", + "miR-455-3p", + "miR-455-5p", + "miR-4652-5p", + "miR-4664-3p", + "miR-4668-3p", + "miR-4677-3p", + "miR-4746-5p", + "miR-4772-3p", + "miR-4787-3p", + "miR-483-3p", + "miR-483-5p", + "miR-485-3p", + "miR-485-5p", + "miR-486-5p", + "miR-487a-3p", + "miR-487a-5p", + "miR-487b-3p", + "miR-487b-5p", + "miR-488-3p", + "miR-488-5p", + "miR-490-3p", + "miR-491-3p", + "miR-491-5p", + "miR-493-3p", + "miR-493-5p", + "miR-494-3p", + "miR-495-3p", + "miR-495-5p", + "miR-496", + "miR-497-5p", + "miR-498-3p", + "miR-498-5p", + "miR-5000-3p", + "miR-500a-3p", + "miR-501-3p", + "miR-501-5p", + "miR-5010-3p", + "miR-502-3p", + "miR-503-3p", + "miR-503-5p", + "miR-505-3p", + "miR-505-5p", + "miR-507", + "miR-508-3p", + "miR-508-5p", + "miR-509-3-5p", + "miR-509-3p", + "miR-511-5p", + "miR-512-3p", + "miR-513b-5p", + "miR-513c-5p", + "miR-514a-3p", + "miR-514a-5p", + "miR-514b-3p", + "miR-514b-5p", + "miR-515-3p", + "miR-515-5p", + "miR-516a-5p", + "miR-516b-5p", + "miR-517-5p", + "miR-517c-3p", + "miR-5187-5p", + "miR-518a-3p", + "miR-518b", + "miR-518c-3p", + "miR-518e-3p", + "miR-518f-3p", + "miR-518f-5p", + "miR-519a-3p", + "miR-519b-3p", + "miR-519c-3p", + "miR-519d-3p", + "miR-519e-3p", + "miR-519e-5p", + "miR-520a-3p", + "miR-520a-5p", + "miR-520c-3p", + "miR-520d-3p", + "miR-520e-3p", + "miR-520g-3p", + "miR-522-3p", + "miR-523-3p", + "miR-524-5p", + "miR-525-3p", + "miR-525-5p", + "miR-526b-5p", + "miR-532-3p", + "miR-532-5p", + "miR-539-3p", + "miR-539-5p", + "miR-541-3p", + "miR-542-3p", + "miR-542-5p", + "miR-543", + "miR-544a", + "miR-548b-3p", + "miR-548y", + "miR-550a-3p", + "miR-551a", + "miR-551b-3p", + "miR-552-3p", + "miR-5589-5p", + "miR-561-5p", + "miR-5698", + "miR-5699-5p", + "miR-573", + "miR-574-3p", + "miR-576-5p", + "miR-577", + "miR-580-3p", + "miR-582-3p", + "miR-582-5p", + "miR-584-3p", + "miR-584-5p", + "miR-589-3p", + "miR-589-5p", + "miR-590-3p", + "miR-590-5p", + "miR-592", + "miR-598-3p", + "miR-615-3p", + "miR-616-5p", + "miR-618", + "miR-624-5p", + "miR-625-3p", + "miR-627-5p", + "miR-628-3p", + "miR-628-5p", + "miR-629-3p", + "miR-629-5p", + "miR-642a-5p", + "miR-6499-5p", + "miR-6509-5p", + "miR-651-5p", + "miR-6510-3p", + "miR-6511a-3p", + "miR-6511b-3p", + "miR-654-3p", + "miR-654-5p", + "miR-655-3p", + "miR-656-3p", + "miR-659-5p", + "miR-660-5p", + "miR-663b", + "miR-664a-3p", + "miR-668-3p", + "miR-6715a-3p", + "miR-6718-5p", + "miR-6720-3p", + "miR-6724-5p", + "miR-676-3p", + "miR-6761-5p", + "miR-6798-3p", + "miR-6806-3p", + "miR-6808-3p", + "miR-6820-3p", + "miR-6842-3p", + "miR-6875-5p", + "miR-6892-5p", + "miR-7-1-3p", + "miR-7-2-3p", + "miR-708-3p", + "miR-708-5p", + "miR-744-3p", + "miR-744-5p", + "miR-758-3p", + "miR-760", + "miR-766-3p", + "miR-767-5p", + "miR-769-3p", + "miR-769-5p", + "miR-7702", + "miR-7706", + "miR-7974", + "miR-874-3p", + "miR-874-5p", + "miR-877-3p", + "miR-877-5p", + "miR-885-5p", + "miR-887-3p", + "miR-888-5p", + "miR-889-3p", + "miR-891a-5p", + "miR-891b", + "miR-892a", + "miR-892b", + "miR-892c-3p", + "miR-92a-1-5p", + "miR-92a-3p", + "miR-92b-3p", + "miR-93-3p", + "miR-93-5p", + "miR-934", + "miR-935", + "miR-937-3p", + "miR-940", + "miR-941", + "miR-942-3p", + "miR-942-5p", + "miR-944", + "miR-95-3p", + "miR-96-5p", + "miR-98-5p", + "miR-9903", + "miR-9983-3p", + "miR-99a-3p", + "miR-99a-5p", + "miR-99b-3p", + "miR-99b-5p", + "misc-tRF__MT-TD", + "misc-tRF__MT-TE", + "misc-tRF__MT-TF", + "misc-tRF__MT-TG", + "misc-tRF__MT-TH", + "misc-tRF__MT-TK", + "misc-tRF__MT-TL", + "misc-tRF__MT-TN", + "misc-tRF__MT-TP", + "misc-tRF__MT-TS", + "misc-tRF__MT-TV", + "misc-tRF__MT-TY", + "misc-tRF__tRNA-Ala-AGC", + "misc-tRF__tRNA-Ala-TGC", + "misc-tRF__tRNA-Arg-CCG", + "misc-tRF__tRNA-Arg-CCT", + "misc-tRF__tRNA-Arg-TCT", + "misc-tRF__tRNA-Asn-GTT", + "misc-tRF__tRNA-Asp-GTC", + "misc-tRF__tRNA-Cys-GCA", + "misc-tRF__tRNA-Gln-CTG", + "misc-tRF__tRNA-Gln-TTG", + "misc-tRF__tRNA-Glu-CTC", + "misc-tRF__tRNA-Glu-TTC", + "misc-tRF__tRNA-Gly-CCC", + "misc-tRF__tRNA-Gly-GCC", + "misc-tRF__tRNA-His-GTG", + "misc-tRF__tRNA-Leu-CAA", + "misc-tRF__tRNA-Leu-CAG", + "misc-tRF__tRNA-Lys-CTT", + "misc-tRF__tRNA-Lys-TTT", + "misc-tRF__tRNA-Met-CAT", + "misc-tRF__tRNA-Phe-GAA", + "misc-tRF__tRNA-Pro-TGG", + "misc-tRF__tRNA-SeC-TCA", + 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