diff --git "a/modeling_bert.py" "b/modeling_bert.py" new file mode 100644--- /dev/null +++ "b/modeling_bert.py" @@ -0,0 +1,2326 @@ +# code from huggingface transformers 4.17.0 +# coding=utf-8 +# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team. +# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved. +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +"""PyTorch BERT model.""" + +import importlib +import math +import os +import warnings +from dataclasses import dataclass +from typing import Optional, Tuple + +import numpy as np + +import torch +import torch.utils.checkpoint +from packaging import version +from torch import nn +from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss + +from transformers.activations import ACT2FN +from transformers.file_utils import ( + ModelOutput, + add_code_sample_docstrings, + add_start_docstrings, + add_start_docstrings_to_model_forward, + replace_return_docstrings, +) +from transformers.modeling_outputs import ( + BaseModelOutputWithPastAndCrossAttentions, + BaseModelOutputWithPoolingAndCrossAttentions, + CausalLMOutputWithCrossAttentions, + MaskedLMOutput, + MultipleChoiceModelOutput, + NextSentencePredictorOutput, + QuestionAnsweringModelOutput, + SequenceClassifierOutput, + TokenClassifierOutput, +) +from transformers.modeling_utils import ( + PreTrainedModel, + apply_chunking_to_forward, + find_pruneable_heads_and_indices, + prune_linear_layer, +) +from transformers.utils import logging +from transformers.models.bert.configuration_bert import BertConfig + + +logger = logging.get_logger(__name__) + +_CHECKPOINT_FOR_DOC = "bert-base-uncased" +_CONFIG_FOR_DOC = "BertConfig" +_TOKENIZER_FOR_DOC = "BertTokenizer" + +BERT_PRETRAINED_MODEL_ARCHIVE_LIST = [ + "bert-base-uncased", + "bert-large-uncased", + "bert-base-cased", + "bert-large-cased", + "bert-base-multilingual-uncased", + "bert-base-multilingual-cased", + "bert-base-chinese", + "bert-base-german-cased", + "bert-large-uncased-whole-word-masking", + "bert-large-cased-whole-word-masking", + "bert-large-uncased-whole-word-masking-finetuned-squad", + "bert-large-cased-whole-word-masking-finetuned-squad", + "bert-base-cased-finetuned-mrpc", + "bert-base-german-dbmdz-cased", + "bert-base-german-dbmdz-uncased", + "cl-tohoku/bert-base-japanese", + "cl-tohoku/bert-base-japanese-whole-word-masking", + "cl-tohoku/bert-base-japanese-char", + "cl-tohoku/bert-base-japanese-char-whole-word-masking", + "TurkuNLP/bert-base-finnish-cased-v1", + "TurkuNLP/bert-base-finnish-uncased-v1", + "wietsedv/bert-base-dutch-cased", + # See all BERT models at https://huggingface.co/models?filter=bert +] + + +def get_cls_by_name(name: str) -> type: + """Get class by its name and module path. + + Args: + name (str): e.g., transfomers:T5ForConditionalGeneration, modeling_t5:my_class + + Returns: + type: found class for `name` + """ + module_name, cls_name = name.split(':') + return getattr(importlib.import_module(module_name), cls_name) + + +def load_tf_weights_in_bert(model, config, tf_checkpoint_path): + """Load tf checkpoints in a pytorch model.""" + try: + import re + + import numpy as np + import tensorflow as tf + except ImportError: + logger.error( + "Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see " + "https://www.tensorflow.org/install/ for installation instructions." + ) + raise + tf_path = os.path.abspath(tf_checkpoint_path) + logger.info(f"Converting TensorFlow checkpoint from {tf_path}") + # Load weights from TF model + init_vars = tf.train.list_variables(tf_path) + names = [] + arrays = [] + for name, shape in init_vars: + logger.info(f"Loading TF weight {name} with shape {shape}") + array = tf.train.load_variable(tf_path, name) + names.append(name) + arrays.append(array) + + for name, array in zip(names, arrays): + name = name.split("/") + # adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v + # which are not required for using pretrained model + if any( + n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"] + for n in name + ): + logger.info(f"Skipping {'/'.join(name)}") + continue + pointer = model + for m_name in name: + if re.fullmatch(r"[A-Za-z]+_\d+", m_name): + scope_names = re.split(r"_(\d+)", m_name) + else: + scope_names = [m_name] + if scope_names[0] == "kernel" or scope_names[0] == "gamma": + pointer = getattr(pointer, "weight") + elif scope_names[0] == "output_bias" or scope_names[0] == "beta": + pointer = getattr(pointer, "bias") + elif scope_names[0] == "output_weights": + pointer = getattr(pointer, "weight") + elif scope_names[0] == "squad": + pointer = getattr(pointer, "classifier") + else: + try: + pointer = getattr(pointer, scope_names[0]) + except AttributeError: + logger.info(f"Skipping {'/'.join(name)}") + continue + if len(scope_names) >= 2: + num = int(scope_names[1]) + pointer = pointer[num] + if m_name[-11:] == "_embeddings": + pointer = getattr(pointer, "weight") + elif m_name == "kernel": + array = np.transpose(array) + try: + if pointer.shape != array.shape: + raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched") + except AssertionError as e: + e.args += (pointer.shape, array.shape) + raise + logger.info(f"Initialize PyTorch weight {name}") + pointer.data = torch.from_numpy(array) + return model + + +class BertEmbeddings(nn.Module): + """Construct the embeddings from word, position and token_type embeddings.""" + + def __init__(self, config): + super().__init__() + self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id) + if config.position_embedding_type == 'absolute': + self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size) + self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size) + + # self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load + # any TensorFlow checkpoint file + self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps) + self.dropout = nn.Dropout(config.hidden_dropout_prob) + # position_ids (1, len position emb) is contiguous in memory and exported when serialized + self.position_embedding_type = getattr(config, "position_embedding_type", "absolute") + self.register_buffer("position_ids", torch.arange(config.max_position_embeddings).expand((1, -1))) + if version.parse(torch.__version__) > version.parse("1.6.0"): + self.register_buffer( + "token_type_ids", + torch.zeros(self.position_ids.size(), dtype=torch.long), + persistent=False, + ) + + def forward( + self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0 + ): + if input_ids is not None: + input_shape = input_ids.size() + else: + input_shape = inputs_embeds.size()[:-1] + + seq_length = input_shape[1] + + if position_ids is None: + position_ids = self.position_ids[:, past_key_values_length: seq_length + past_key_values_length] + + # Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs + # when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves + # issue #5664 + if token_type_ids is None: + if hasattr(self, "token_type_ids"): + buffered_token_type_ids = self.token_type_ids[:, :seq_length] + buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length) + token_type_ids = buffered_token_type_ids_expanded + else: + token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device) + if inputs_embeds is None: + inputs_embeds = self.word_embeddings(input_ids) + token_type_embeddings = self.token_type_embeddings(token_type_ids) + embeddings = inputs_embeds + token_type_embeddings + if self.position_embedding_type == "absolute": + position_embeddings = self.position_embeddings(position_ids) + embeddings += position_embeddings + embeddings = self.LayerNorm(embeddings) + embeddings = self.dropout(embeddings) + return embeddings + + +class BertSelfAttention(nn.Module): + def __init__(self, config, position_embedding_type=None, has_relative_attention_bias=False): + """Bert self-attention with abs/relative position encodings and sparsity. + + Args: + config: HF model configuration loaded from json + position_embedding_type (str, optional): absolute, relative_key, relative_key_query or + relative_attention_bias . Defaults to None. + has_relative_attention_bias (bool, optional): Use it's own relative embeddings matrix. Defaults to False. + """ + super().__init__() + if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"): + raise ValueError( + f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention " + f"heads ({config.num_attention_heads})" + ) + + self.config = config + self.is_decoder = config.is_decoder + # max_seq_len is used in absolute, relative_key & relative_key_query and to pre-define sparsity layout + self.max_seq_len = config.max_position_embeddings + + self.num_attention_heads = config.num_attention_heads + self.attention_head_size = int(config.hidden_size / config.num_attention_heads) + self.all_head_size = self.num_attention_heads * self.attention_head_size + + # sparse attention configuration + self.is_sparse = False + sparse_config_cls_name = getattr(config, 'sparse_config_cls', None) + if sparse_config_cls_name: + self.is_sparse = True + sparse_config_cls = get_cls_by_name(sparse_config_cls_name) + self.sparse_config = sparse_config_cls(**self.config.sparse_attention) + + if self.is_decoder and self.is_sparse: + raise RuntimeError('SparseAttention with BertModel decoder is not currently supported!') + + self.query = nn.Linear(config.hidden_size, self.all_head_size) + self.key = nn.Linear(config.hidden_size, self.all_head_size) + self.value = nn.Linear(config.hidden_size, self.all_head_size) + + self.dropout = nn.Dropout(config.attention_probs_dropout_prob) + self.softmax = nn.Softmax(dim=-1) + self.position_embedding_type = position_embedding_type or getattr(config, "position_embedding_type", "absolute") + self.has_relative_attention_bias = has_relative_attention_bias + + if self.is_sparse and self.position_embedding_type not in ['absolute', 'relative_attention_bias', 'rotary']: + raise RuntimeError(f'SparseAttention supports `absolute`, `relative_attention_bias` and `rotary` position ' + f'embeddings, but: position_embeddings_type = {self.position_embedding_type}') + + if self.is_decoder and self.position_embedding_type == 'relative_attention_bias': + raise RuntimeError(f'BertSelfAttention does not support `relative_attention_bias` with `is_decoder` ' + f' = {self.is_decoder}') + + if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query": + self.max_position_embeddings = config.max_position_embeddings + self.max_seq_len = 2 * config.max_position_embeddings + self.distance_embedding = nn.Embedding(self.max_distance - 1, self.attention_head_size) + elif self.position_embedding_type == 'relative_attention_bias' and self.has_relative_attention_bias: + self.relative_attention_num_buckets = self.config.relative_attention_num_buckets + self.relative_last_bucket_distance = self.config.relative_last_bucket_distance + self.relative_attention_bias = nn.Embedding(self.relative_attention_num_buckets, self.num_attention_heads) + elif self.position_embedding_type == 'rotary': + self.rotary_base = getattr(config, 'rotary_base', None) + self.rotary_dim = getattr(config, 'rotary_dim', self.attention_head_size) + self.rotary_emb = RotaryEmbedding(self.rotary_dim, base=self.rotary_base) + + if self.is_sparse: + from deepspeed.ops.sparse_attention import SparseSelfAttention + self.sparse_self_attention = SparseSelfAttention(self.sparse_config, max_seq_length=self.max_seq_len) + + def transpose_for_scores(self, x): + new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size) + x = x.view(new_x_shape) + return x.permute(0, 2, 1, 3) + + def transpose_key_for_scores(self, x): + # to remove redundant transpose in attention_scores matmul operation + new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size) + x = x.view(*new_x_shape) + return x.permute(0, 2, 3, 1) + + @staticmethod + def _relative_position_bucket(relative_position, bidirectional=True, num_buckets=32, max_distance=128): + """ + Adapted from Mesh Tensorflow: + https://github.com/tensorflow/mesh/blob/0cb87fe07da627bf0b7e60475d59f95ed6b5be3d/mesh_tensorflow/transformer/transformer_layers.py#L593 + + #todo: refactor, the same code is used in modeling_t5 + + Translate relative position to a bucket number for relative attention. The relative position is defined as + memory_position - query_position, i.e. the distance in tokens from the attending position to the attended-to + position. If bidirectional=False, then positive relative positions are invalid. We use smaller buckets for + small absolute relative_position and larger buckets for larger absolute relative_positions. All relative + positions >=max_distance map to the same bucket. All relative positions <=-max_distance map to the same bucket. + This should allow for more graceful generalization to longer sequences than the model has been trained on + + Args: + relative_position: an int32 Tensor + bidirectional: a boolean - whether the attention is bidirectional + num_buckets: an integer + max_distance: an integer + + Returns: + a Tensor with the same shape as relative_position, containing int32 values in the range [0, num_buckets) + """ + relative_buckets = 0 + if bidirectional: + num_buckets //= 2 + relative_buckets += (relative_position > 0).to(torch.long) * num_buckets + relative_position = torch.abs(relative_position) + else: + relative_position = -torch.min(relative_position, torch.zeros_like(relative_position)) + # now relative_position is in the range [0, inf) + + # half of the buckets are for exact increments in positions + max_exact = num_buckets // 2 + is_small = relative_position < max_exact + + # The other half of the buckets are for logarithmically bigger bins in positions up to max_distance + relative_postion_if_large = max_exact + ( + torch.log(relative_position.float() / max_exact) + / math.log(max_distance / max_exact) + * (num_buckets - max_exact) + ).to(torch.long) + relative_postion_if_large = torch.min( + relative_postion_if_large, torch.full_like(relative_postion_if_large, num_buckets - 1) + ) + + relative_buckets += torch.where(is_small, relative_position, relative_postion_if_large) + return relative_buckets + + def compute_bias(self, query_length, key_length): + """ Compute binned relative position bias """ + context_position = torch.arange(query_length, dtype=torch.long)[:, None] + memory_position = torch.arange(key_length, dtype=torch.long)[None, :] + relative_position = memory_position - context_position # shape (query_length, key_length) + relative_position_bucket = self._relative_position_bucket( + relative_position, # shape (query_length, key_length) + bidirectional=(not self.is_decoder), + num_buckets=self.relative_attention_num_buckets, + max_distance=self.relative_last_bucket_distance, + ) + relative_position_bucket = relative_position_bucket.to(self.relative_attention_bias.weight.device) + values = self.relative_attention_bias(relative_position_bucket) # shape (query_length, key_length, num_heads) + values = values.permute([2, 0, 1]).unsqueeze(0) # shape (1, num_heads, query_length, key_length) + return values + + def get_relative_attention_bias(self, position_bias, batch_size, query_length, key_length): + if position_bias is None and self.has_relative_attention_bias: + position_bias = self.compute_bias(query_length, key_length) + position_bias = position_bias.repeat(batch_size, 1, 1, 1) + return position_bias + + def forward( + self, + hidden_states, + attention_mask=None, + head_mask=None, + encoder_hidden_states=None, + encoder_attention_mask=None, + past_key_value=None, + position_bias=None, + output_attentions=False, + ): + mixed_query_layer = self.query(hidden_states) + + # If this is instantiated as a cross-attention module, the keys + # and values come from an encoder; the attention mask needs to be + # such that the encoder's padding tokens are not attended to. + is_cross_attention = encoder_hidden_states is not None + + if is_cross_attention and past_key_value is not None: + # reuse k,v, cross_attentions + key_layer = past_key_value[0] + value_layer = past_key_value[1] + attention_mask = encoder_attention_mask + elif is_cross_attention: + key_layer = self.transpose_key_for_scores(self.key(encoder_hidden_states)) + value_layer = self.transpose_for_scores(self.value(encoder_hidden_states)) + attention_mask = encoder_attention_mask + elif past_key_value is not None: + key_layer = self.transpose_key_for_scores(self.key(hidden_states)) + value_layer = self.transpose_for_scores(self.value(hidden_states)) + key_layer = torch.cat([past_key_value[0], key_layer], dim=2) + value_layer = torch.cat([past_key_value[1], value_layer], dim=2) + else: + key_layer = self.transpose_key_for_scores(self.key(hidden_states)) + value_layer = self.transpose_for_scores(self.value(hidden_states)) + + query_layer = self.transpose_for_scores(mixed_query_layer) + + if self.is_decoder: + # if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states. + # Further calls to cross_attention layer can then reuse all cross-attention + # key/value_states (first "if" case) + # if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of + # all previous decoder key/value_states. Further calls to uni-directional self-attention + # can concat previous decoder key/value_states to current projected key/value_states (third "elif" case) + # if encoder bi-directional self-attention `past_key_value` is always `None` + past_key_value = (key_layer, value_layer) + + bs, seq_len, _ = hidden_states.shape + # query shape: bs x n_heads x seq_len x head_dim + # key shape: bs x n_heads x head_dim x seq_len + + if self.position_embedding_type == 'rotary': + # todo: in key_layer and value_layer past states already concatenated + # but rotary embeddings should not be applied to past states + if past_key_value is not None: + raise RuntimeError(f'past_key_values is not None are not supported in BertSelfAttention.forward with ' + f'position_embedding_type = {self.position_embedding_type}.') + # traspose to bs x n_heads x seq_len x head_dim + key_layer = key_layer.transpose(-1, -2) + if self.rotary_dim < self.attention_head_size: + query_rot = query_layer[..., :self.rotary_dim] + query_pass = query_layer[..., self.rotary_dim:] + + key_rot = key_layer[..., :self.rotary_dim] + key_pass = key_layer[..., self.rotary_dim:] + else: # full rotary + query_rot = query_layer + key_rot = key_layer + + cos, sin = self.rotary_emb(key_rot, seq_len=seq_len) + query_layer, key_layer = apply_rotary_pos_emb(query_rot, key_rot, cos, sin, offset=0) + if self.rotary_dim < self.attention_head_size: + query_layer = torch.cat((query_layer, query_pass), dim=-1) + key_layer = torch.cat((key_layer, key_pass), dim=-1) + # transpose to bs x n_heads x head_dim x seq_len + key_layer = key_layer.transpose(-1, -2) + + if not self.is_sparse: + # Take the dot product between "query" and "key" to get the raw attention scores. + attention_scores = torch.matmul(query_layer, key_layer) + + if self.position_embedding_type in ["relative_key", "relative_key_query"]: + position_ids_l = torch.arange(seq_len, dtype=torch.long, device=hidden_states.device).view(-1, 1) + position_ids_r = torch.arange(seq_len, dtype=torch.long, device=hidden_states.device).view(1, -1) + distance = position_ids_l - position_ids_r + positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1) + positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility + + # https://arxiv.org/abs/2009.13658 + if self.position_embedding_type == "relative_key": + relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding) + attention_scores = attention_scores + relative_position_scores + elif self.position_embedding_type == "relative_key_query": + relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding) + relative_position_scores_key = torch.einsum("bhdr,lrd->bhlr", key_layer, positional_embedding) + attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key + elif self.position_embedding_type == 'relative_attention_bias': + position_bias = self.get_relative_attention_bias(position_bias, bs, seq_len, seq_len) + attention_scores = attention_scores + position_bias + + attention_scores = attention_scores / math.sqrt(self.attention_head_size) + if attention_mask is not None: + # Apply the attention mask is (precomputed for all layers in BertModel forward() function) + attention_scores = attention_scores + attention_mask + + # Normalize the attention scores to probabilities. + attention_probs = self.softmax(attention_scores) + + # This is actually dropping out entire tokens to attend to, which might + # seem a bit unusual, but is taken from the original Transformer paper. + attention_probs = self.dropout(attention_probs) + + # Mask heads if we want to + if head_mask is not None: + attention_probs = attention_probs * head_mask + + context_layer = torch.matmul(attention_probs, value_layer) + else: + # sparse attention + # todo: return attention_probs + # todo: support relative_key -> need to change einsum with sparse operators.. + # sparse attention supports masks with following shapes: + # key_padding_mask: (bs x seq_len) or (bs x 1 x 1 x seq_len) + # attention_mask: seq_len x seq_len or (1 x 1 x seq_len x seq_len) + if self.position_embedding_type == 'relative_attention_bias': + position_bias = self.get_relative_attention_bias(position_bias, bs, seq_len, seq_len) + + query_dtype = query_layer.dtype + if query_dtype != torch.half: + # deepspeed sparse_self_attention supports only fp16 inputs + # manually cast to half in case if running in fp32 or O1 modes + query_layer, key_layer, value_layer = query_layer.half(), key_layer.half(), value_layer.half() + # attention_mask = attention_mask.half() + if position_bias is not None: + position_bias = position_bias.half() + context_layer = self.sparse_self_attention(query_layer, key_layer, value_layer, rpe=position_bias, + key_padding_mask=attention_mask) + if query_dtype == torch.float: + context_layer = context_layer.float() + + context_layer = context_layer.permute(0, 2, 1, 3).contiguous() + new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,) + context_layer = context_layer.view(new_context_layer_shape) + + if self.is_sparse and output_attentions: + # todo: return sparse attention_scores or None, to not break the run + raise RuntimeError(f'SparseAttention does not support output_attention = {output_attentions}') + + outputs = (context_layer, attention_probs) if output_attentions else (context_layer,) + + if self.position_embedding_type == 'relative_attention_bias': + outputs = outputs + (position_bias,) + + if self.is_decoder: + outputs = outputs + (past_key_value,) + return outputs + + +class BertSelfOutput(nn.Module): + def __init__(self, config): + super().__init__() + self.pre_layer_norm = getattr(config, 'pre_layer_norm', False) + self.bert_output_layer = True + self.dense = nn.Linear(config.hidden_size, config.hidden_size) + self.dropout = nn.Dropout(config.hidden_dropout_prob) + if not self.pre_layer_norm: + self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps) + + def forward(self, hidden_states, input_tensor): + hidden_states = self.dense(hidden_states) + hidden_states = self.dropout(hidden_states) + if not self.pre_layer_norm: + hidden_states = self.LayerNorm(hidden_states + input_tensor) + return hidden_states + + +class BertAttention(nn.Module): + def __init__(self, config, position_embedding_type=None, has_relative_attention_bias=False): + super().__init__() + self.self = BertSelfAttention(config, position_embedding_type=position_embedding_type, + has_relative_attention_bias=has_relative_attention_bias) + self.output = BertSelfOutput(config) + self.pruned_heads = set() + + def prune_heads(self, heads): + if len(heads) == 0: + return + heads, index = find_pruneable_heads_and_indices( + heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads + ) + + # Prune linear layers + self.self.query = prune_linear_layer(self.self.query, index) + self.self.key = prune_linear_layer(self.self.key, index) + self.self.value = prune_linear_layer(self.self.value, index) + self.output.dense = prune_linear_layer(self.output.dense, index, dim=1) + + # Update hyper params and store pruned heads + self.self.num_attention_heads = self.self.num_attention_heads - len(heads) + self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads + self.pruned_heads = self.pruned_heads.union(heads) + + def forward( + self, + hidden_states, + attention_mask=None, + head_mask=None, + encoder_hidden_states=None, + encoder_attention_mask=None, + past_key_value=None, + position_bias=None, + output_attentions=False, + ): + self_outputs = self.self( + hidden_states, + attention_mask, + head_mask, + encoder_hidden_states, + encoder_attention_mask, + past_key_value, + position_bias, + output_attentions, + ) + attention_output = self.output(self_outputs[0], hidden_states) + outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them + return outputs + + +class BertIntermediate(nn.Module): + def __init__(self, config): + super().__init__() + self.dense = nn.Linear(config.hidden_size, config.intermediate_size) + if isinstance(config.hidden_act, str): + self.intermediate_act_fn = ACT2FN[config.hidden_act] + else: + self.intermediate_act_fn = config.hidden_act + + def forward(self, hidden_states): + hidden_states = self.dense(hidden_states) + hidden_states = self.intermediate_act_fn(hidden_states) + return hidden_states + + +class BertOutput(nn.Module): + def __init__(self, config): + super().__init__() + self.pre_layer_norm = getattr(config, 'pre_layer_norm', False) + self.bert_output_layer = True + self.dense = nn.Linear(config.intermediate_size, config.hidden_size) + self.dropout = nn.Dropout(config.hidden_dropout_prob) + if not self.pre_layer_norm: + self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps) + + def forward(self, hidden_states, input_tensor): + hidden_states = self.dense(hidden_states) + hidden_states = self.dropout(hidden_states) + if not self.pre_layer_norm: + hidden_states = self.LayerNorm(hidden_states + input_tensor) + return hidden_states + + +class BertLayer(nn.Module): + def __init__(self, config, has_relative_attention_bias=False): + super().__init__() + self.chunk_size_feed_forward = config.chunk_size_feed_forward + self.seq_len_dim = 1 + self.pre_layer_norm = getattr(config, 'pre_layer_norm', False) + if self.pre_layer_norm: + self.pre_attention_ln = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps) + self.post_attention_ln = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps) + self.attention = BertAttention(config, has_relative_attention_bias=has_relative_attention_bias) + self.is_decoder = config.is_decoder + self.add_cross_attention = config.add_cross_attention + if self.add_cross_attention: + if not self.is_decoder: + raise ValueError(f"{self} should be used as a decoder model if cross attention is added") + self.crossattention = BertAttention(config, position_embedding_type="absolute") + self.intermediate = BertIntermediate(config) + self.output = BertOutput(config) + + def forward( + self, + hidden_states, + attention_mask=None, + head_mask=None, + encoder_hidden_states=None, + encoder_attention_mask=None, + past_key_value=None, + position_bias=None, + output_attentions=False, + ): + # decoder uni-directional self-attention cached key/values tuple is at positions 1,2 + self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None + self_attention_outputs = self.attention( + hidden_states if not self.pre_layer_norm else self.pre_attention_ln(hidden_states), + attention_mask, + head_mask, + position_bias=position_bias, + output_attentions=output_attentions, + past_key_value=self_attn_past_key_value, + ) + attention_output = self_attention_outputs[0] + + # if decoder, the last output is tuple of self-attn cache + if self.is_decoder: + outputs = self_attention_outputs[1:-1] + present_key_value = self_attention_outputs[-1] + else: + outputs = self_attention_outputs[1:] # add self attentions if we output attention weights + + cross_attn_present_key_value = None + if self.is_decoder and encoder_hidden_states is not None: + if not hasattr(self, "crossattention"): + raise ValueError( + f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers by setting `config.add_cross_attention=True`" + ) + + # cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple + cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None + cross_attention_outputs = self.crossattention( + attention_output, + attention_mask, + head_mask, + encoder_hidden_states, + encoder_attention_mask, + cross_attn_past_key_value, + position_bias, + output_attentions, + ) + attention_output = cross_attention_outputs[0] + outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights + + # add cross-attn cache to positions 3,4 of present_key_value tuple + cross_attn_present_key_value = cross_attention_outputs[-1] + present_key_value = present_key_value + cross_attn_present_key_value + + if self.pre_layer_norm: + attention_output = hidden_states + attention_output + + layer_output = apply_chunking_to_forward( + self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output + ) + + outputs = (layer_output,) + outputs + + # if decoder, return the attn key/values as the last output + if self.is_decoder: + outputs = outputs + (present_key_value,) + + return outputs + + def feed_forward_chunk(self, attention_output): + intermediate_inp = attention_output if not self.pre_layer_norm else self.post_attention_ln(attention_output) + intermediate_output = self.intermediate(intermediate_inp) + layer_output = self.output(intermediate_output, attention_output) + if self.pre_layer_norm: + layer_output = layer_output + attention_output + return layer_output + + +class BertEncoder(nn.Module): + def __init__(self, config): + super().__init__() + self.config = config + self.pre_layer_norm = getattr(config, 'pre_layer_norm', False) + # last_layer_ln is used with pre_layer_norm: + # pre_layer_norm: https://arxiv.org/abs/2002.04745 + # x = x + mha(ln(x)) + # x = x + ffn(mha) + # if last_layer: + # x = ln(x) + # post_layer_norm (standart bert): + # x = ln(x + mha(x)) + # x = ln(x + ffn(x)) + self.last_layer_norm = getattr(config, 'last_layer_norm', self.pre_layer_norm) + if not self.pre_layer_norm and self.last_layer_norm: + raise RuntimeError('last_layer_norm could be used only with pre_layer_norm=True') + self.layer = nn.ModuleList( + [BertLayer(config, has_relative_attention_bias=bool(i == 0)) for i in range(config.num_hidden_layers)] + ) + self.gradient_checkpointing = False + if self.pre_layer_norm and self.last_layer_norm: + self.last_layer_ln = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps) + + def forward( + self, + hidden_states, + attention_mask=None, + head_mask=None, + encoder_hidden_states=None, + encoder_attention_mask=None, + past_key_values=None, + use_cache=None, + output_attentions=False, + output_hidden_states=False, + return_dict=True, + ): + all_hidden_states = () if output_hidden_states else None + all_self_attentions = () if output_attentions else None + all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None + position_bias = None + + next_decoder_cache = () if use_cache else None + for i, layer_module in enumerate(self.layer): + if output_hidden_states: + all_hidden_states = all_hidden_states + (hidden_states,) + + layer_head_mask = head_mask[i] if head_mask is not None else None + past_key_value = past_key_values[i] if past_key_values is not None else None + + if self.gradient_checkpointing and self.training: + + if use_cache: + logger.warning( + "`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..." + ) + use_cache = False + + def create_custom_forward(module): + def custom_forward(*inputs): + return module(*inputs, past_key_value, position_bias, output_attentions) + + return custom_forward + + layer_outputs = torch.utils.checkpoint.checkpoint( + create_custom_forward(layer_module), + hidden_states, + attention_mask, + layer_head_mask, + encoder_hidden_states, + encoder_attention_mask, + ) + else: + layer_outputs = layer_module( + hidden_states, + attention_mask, + layer_head_mask, + encoder_hidden_states, + encoder_attention_mask, + past_key_value, + position_bias, + output_attentions, + ) + + hidden_states = layer_outputs[0] + if use_cache: + next_decoder_cache += (layer_outputs[-1],) + if output_attentions: + all_self_attentions = all_self_attentions + (layer_outputs[1],) + if self.config.add_cross_attention: + all_cross_attentions = all_cross_attentions + (layer_outputs[2],) + + if self.config.position_embedding_type == 'relative_attention_bias': + if not output_attentions: + position_bias = layer_outputs[1] + else: + position_bias = layer_outputs[2] + + if self.pre_layer_norm and self.last_layer_norm: + hidden_states = self.last_layer_ln(hidden_states) + + if output_hidden_states: + all_hidden_states = all_hidden_states + (hidden_states,) + + if not return_dict: + return tuple( + v + for v in [ + hidden_states, + next_decoder_cache, + all_hidden_states, + all_self_attentions, + all_cross_attentions, + ] + if v is not None + ) + return BaseModelOutputWithPastAndCrossAttentions( + last_hidden_state=hidden_states, + past_key_values=next_decoder_cache, + hidden_states=all_hidden_states, + attentions=all_self_attentions, + cross_attentions=all_cross_attentions, + ) + + +class BertPooler(nn.Module): + def __init__(self, config): + super().__init__() + self.dense = nn.Linear(config.hidden_size, config.hidden_size) + self.activation = nn.Tanh() + + def forward(self, hidden_states): + # We "pool" the model by simply taking the hidden state corresponding + # to the first token. + first_token_tensor = hidden_states[:, 0] + pooled_output = self.dense(first_token_tensor) + pooled_output = self.activation(pooled_output) + return pooled_output + + +class BertPredictionHeadTransform(nn.Module): + def __init__(self, config): + super().__init__() + self.dense = nn.Linear(config.hidden_size, config.hidden_size) + if isinstance(config.hidden_act, str): + self.transform_act_fn = ACT2FN[config.hidden_act] + else: + self.transform_act_fn = config.hidden_act + self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps) + + def forward(self, hidden_states): + hidden_states = self.dense(hidden_states) + hidden_states = self.transform_act_fn(hidden_states) + hidden_states = self.LayerNorm(hidden_states) + return hidden_states + + +class BertLMPredictionHead(nn.Module): + def __init__(self, config): + super().__init__() + self.transform = BertPredictionHeadTransform(config) + + # The output weights are the same as the input embeddings, but there is + # an output-only bias for each token. + self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False) + + self.bias = nn.Parameter(torch.zeros(config.vocab_size)) + + # Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings` + self.decoder.bias = self.bias + + def forward(self, hidden_states): + hidden_states = self.transform(hidden_states) + hidden_states = self.decoder(hidden_states) + return hidden_states + + +class BertOnlyMLMHead(nn.Module): + def __init__(self, config): + super().__init__() + self.predictions = BertLMPredictionHead(config) + + def forward(self, sequence_output): + prediction_scores = self.predictions(sequence_output) + return prediction_scores + + +class BertOnlyNSPHead(nn.Module): + def __init__(self, config): + super().__init__() + self.seq_relationship = nn.Linear(config.hidden_size, 2) + + def forward(self, pooled_output): + seq_relationship_score = self.seq_relationship(pooled_output) + return seq_relationship_score + + +class BertPreTrainingHeads(nn.Module): + def __init__(self, config): + super().__init__() + self.predictions = BertLMPredictionHead(config) + self.seq_relationship = nn.Linear(config.hidden_size, 2) + + def forward(self, sequence_output, pooled_output): + prediction_scores = self.predictions(sequence_output) + seq_relationship_score = self.seq_relationship(pooled_output) + return prediction_scores, seq_relationship_score + + +class BertPreTrainedModel(PreTrainedModel): + """ + An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained + models. + """ + + config_class = BertConfig + load_tf_weights = load_tf_weights_in_bert + base_model_prefix = "bert" + supports_gradient_checkpointing = True + _keys_to_ignore_on_load_missing = [r"position_ids"] + + def _init_weights(self, module): + """Initialize the weights""" + if isinstance(module, nn.Linear): + # Slightly different from the TF version which uses truncated_normal for initialization + # cf https://github.com/pytorch/pytorch/pull/5617 + std = self.config.initializer_range + if hasattr(module, 'bert_output_layer') and self.config.pre_layer_norm: + std /= math.sqrt(2.0 * self.config.num_hidden_layers) + module.weight.data.normal_(mean=0.0, std=std) + if module.bias is not None: + module.bias.data.zero_() + elif isinstance(module, nn.Embedding): + module.weight.data.normal_(mean=0.0, std=self.config.initializer_range) + if module.padding_idx is not None: + module.weight.data[module.padding_idx].zero_() + elif isinstance(module, nn.LayerNorm): + module.bias.data.zero_() + module.weight.data.fill_(1.0) + + def _set_gradient_checkpointing(self, module, value=False): + if isinstance(module, BertEncoder): + module.gradient_checkpointing = value + + +@dataclass +class BertForPreTrainingOutput(ModelOutput): + """ + Output type of [`BertForPreTraining`]. + + Args: + loss (*optional*, returned when `labels` is provided, `torch.FloatTensor` of shape `(1,)`): + Total loss as the sum of the masked language modeling loss and the next sequence prediction + (classification) loss. + mlm_loss: masked language modeling loss + nsp_loss: next sequence prediction loss + prediction_logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`): + Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax). + seq_relationship_logits (`torch.FloatTensor` of shape `(batch_size, 2)`): + Prediction scores of the next sequence prediction (classification) head (scores of True/False continuation + before SoftMax). + hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`): + Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer) of + shape `(batch_size, sequence_length, hidden_size)`. + + Hidden-states of the model at the output of each layer plus the initial embedding outputs. + attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`): + Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length, + sequence_length)`. + + Attentions weights after the attention softmax, used to compute the weighted average in the self-attention + heads. + """ + + loss: Optional[torch.FloatTensor] = None + mlm_loss: Optional[torch.FloatTensor] = None + nsp_loss: Optional[torch.FloatTensor] = None + prediction_logits: torch.FloatTensor = None + seq_relationship_logits: torch.FloatTensor = None + hidden_states: Optional[Tuple[torch.FloatTensor]] = None + attentions: Optional[Tuple[torch.FloatTensor]] = None + + +BERT_START_DOCSTRING = r""" + + This model inherits from [`PreTrainedModel`]. Check the superclass documentation for the generic methods the + library implements for all its model (such as downloading or saving, resizing the input embeddings, pruning heads + etc.) + + This model is also a PyTorch [torch.nn.Module](https://pytorch.org/docs/stable/nn.html#torch.nn.Module) subclass. + Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage + and behavior. + + Parameters: + config ([`BertConfig`]): Model configuration class with all the parameters of the model. + Initializing with a config file does not load the weights associated with the model, only the + configuration. Check out the [`~PreTrainedModel.from_pretrained`] method to load the model weights. +""" + +BERT_INPUTS_DOCSTRING = r""" + Args: + input_ids (`torch.LongTensor` of shape `({0})`): + Indices of input sequence tokens in the vocabulary. + + Indices can be obtained using [`BertTokenizer`]. See [`PreTrainedTokenizer.encode`] and + [`PreTrainedTokenizer.__call__`] for details. + + [What are input IDs?](../glossary#input-ids) + attention_mask (`torch.FloatTensor` of shape `({0})`, *optional*): + Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`: + + - 1 for tokens that are **not masked**, + - 0 for tokens that are **masked**. + + [What are attention masks?](../glossary#attention-mask) + token_type_ids (`torch.LongTensor` of shape `({0})`, *optional*): + Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0, + 1]`: + + - 0 corresponds to a *sentence A* token, + - 1 corresponds to a *sentence B* token. + + [What are token type IDs?](../glossary#token-type-ids) + position_ids (`torch.LongTensor` of shape `({0})`, *optional*): + Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0, + config.max_position_embeddings - 1]`. + + [What are position IDs?](../glossary#position-ids) + head_mask (`torch.FloatTensor` of shape `(num_heads,)` or `(num_layers, num_heads)`, *optional*): + Mask to nullify selected heads of the self-attention modules. Mask values selected in `[0, 1]`: + + - 1 indicates the head is **not masked**, + - 0 indicates the head is **masked**. + + inputs_embeds (`torch.FloatTensor` of shape `({0}, hidden_size)`, *optional*): + Optionally, instead of passing `input_ids` you can choose to directly pass an embedded representation. This + is useful if you want more control over how to convert `input_ids` indices into associated vectors than the + model's internal embedding lookup matrix. + output_attentions (`bool`, *optional*): + Whether or not to return the attentions tensors of all attention layers. See `attentions` under returned + tensors for more detail. + output_hidden_states (`bool`, *optional*): + Whether or not to return the hidden states of all layers. See `hidden_states` under returned tensors for + more detail. + return_dict (`bool`, *optional*): + Whether or not to return a [`~file_utils.ModelOutput`] instead of a plain tuple. +""" + + +@add_start_docstrings( + "The bare Bert Model transformer outputting raw hidden-states without any specific head on top.", + BERT_START_DOCSTRING, +) +class BertModel(BertPreTrainedModel): + """ + + The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of + cross-attention is added between the self-attention layers, following the architecture described in [Attention is + all you need](https://arxiv.org/abs/1706.03762) by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit, + Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin. + + To behave as an decoder the model needs to be initialized with the `is_decoder` argument of the configuration set + to `True`. To be used in a Seq2Seq model, the model needs to initialized with both `is_decoder` argument and + `add_cross_attention` set to `True`; an `encoder_hidden_states` is then expected as an input to the forward pass. + """ + + def __init__(self, config, add_pooling_layer=True): + super().__init__(config) + self.config = config + + if hasattr(config, 'sparse_attention'): + self.is_sparse = True + self.sparse_block_size = self.config.sparse_attention['block'] + else: + self.is_sparse = False + + if self.is_sparse and self.config.is_decoder: + raise RuntimeError('SparseAttention with BertModel decoder is not currently supported!') + + self.embeddings = BertEmbeddings(config) + self.encoder = BertEncoder(config) + + self.pooler = BertPooler(config) if add_pooling_layer else None + + # Initialize weights and apply final processing + self.post_init() + + def get_input_embeddings(self): + return self.embeddings.word_embeddings + + def set_input_embeddings(self, value): + self.embeddings.word_embeddings = value + + def _prune_heads(self, heads_to_prune): + """ + Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base + class PreTrainedModel + """ + for layer, heads in heads_to_prune.items(): + self.encoder.layer[layer].attention.prune_heads(heads) + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length")) + @add_code_sample_docstrings( + processor_class=_TOKENIZER_FOR_DOC, + checkpoint=_CHECKPOINT_FOR_DOC, + output_type=BaseModelOutputWithPoolingAndCrossAttentions, + config_class=_CONFIG_FOR_DOC, + ) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + encoder_hidden_states=None, + encoder_attention_mask=None, + past_key_values=None, + use_cache=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*): + Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if + the model is configured as a decoder. + encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*): + Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in + the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`: + + - 1 for tokens that are **not masked**, + - 0 for tokens that are **masked**. + past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`): + Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding. + + If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that + don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all + `decoder_input_ids` of shape `(batch_size, sequence_length)`. + use_cache (`bool`, *optional*): + If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see + `past_key_values`). + """ + output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions + output_hidden_states = ( + output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states + ) + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + + if self.config.is_decoder: + use_cache = use_cache if use_cache is not None else self.config.use_cache + else: + use_cache = False + + if input_ids is not None and inputs_embeds is not None: + raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time") + elif input_ids is not None: + input_shape = input_ids.size() + elif inputs_embeds is not None: + input_shape = inputs_embeds.size()[:-1] + else: + raise ValueError("You have to specify either input_ids or inputs_embeds") + + batch_size, seq_length = input_shape + device = input_ids.device if input_ids is not None else inputs_embeds.device + + # if sparse attention is used, input sequence length should be divisible by block size + if self.is_sparse and seq_length % self.sparse_block_size != 0: + raise RuntimeError(f'BertModel with sparse attention is used, but seq_len = {seq_length} ' + f'is not divisible by block_size = {self.sparse_block_size}') + + # past_key_values_length + past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0 + + if attention_mask is None: + attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device) + + if token_type_ids is None: + if hasattr(self.embeddings, "token_type_ids"): + buffered_token_type_ids = self.embeddings.token_type_ids[:, :seq_length] + buffered_token_type_ids_expanded = buffered_token_type_ids.expand(batch_size, seq_length) + token_type_ids = buffered_token_type_ids_expanded + else: + token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device) + + # We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length] + # ourselves in which case we just need to make it broadcastable to all heads. + extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device) + + # If a 2D or 3D attention mask is provided for the cross-attention + # we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length] + if self.config.is_decoder and encoder_hidden_states is not None: + encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size() + encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length) + if encoder_attention_mask is None: + encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device) + encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask) + else: + encoder_extended_attention_mask = None + + # Prepare head mask if needed + # 1.0 in head_mask indicate we keep the head + # attention_probs has shape bsz x n_heads x N x N + # input head_mask has shape [num_heads] or [num_hidden_layers x num_heads] + # and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length] + head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers) + + embedding_output = self.embeddings( + input_ids=input_ids, + position_ids=position_ids, + token_type_ids=token_type_ids, + inputs_embeds=inputs_embeds, + past_key_values_length=past_key_values_length, + ) + encoder_outputs = self.encoder( + embedding_output, + attention_mask=extended_attention_mask, + head_mask=head_mask, + encoder_hidden_states=encoder_hidden_states, + encoder_attention_mask=encoder_extended_attention_mask, + past_key_values=past_key_values, + use_cache=use_cache, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + sequence_output = encoder_outputs[0] + pooled_output = self.pooler(sequence_output) if self.pooler is not None else None + + if not return_dict: + return (sequence_output, pooled_output) + encoder_outputs[1:] + + return BaseModelOutputWithPoolingAndCrossAttentions( + last_hidden_state=sequence_output, + pooler_output=pooled_output, + past_key_values=encoder_outputs.past_key_values, + hidden_states=encoder_outputs.hidden_states, + attentions=encoder_outputs.attentions, + cross_attentions=encoder_outputs.cross_attentions, + ) + + +@add_start_docstrings( + """ + Bert Model with two heads on top as done during the pretraining: a `masked language modeling` head and a `next + sentence prediction (classification)` head. + """, + BERT_START_DOCSTRING, +) +class BertForPreTraining(BertPreTrainedModel): + def __init__(self, config): + super().__init__(config) + + self.bert = BertModel(config) + self.cls = BertPreTrainingHeads(config) + + # Initialize weights and apply final processing + self.post_init() + + def get_output_embeddings(self): + return self.cls.predictions.decoder + + def set_output_embeddings(self, new_embeddings): + self.cls.predictions.decoder = new_embeddings + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length")) + @replace_return_docstrings(output_type=BertForPreTrainingOutput, config_class=_CONFIG_FOR_DOC) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + labels=None, + next_sentence_label=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*): + Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ..., + config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), + the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]` + next_sentence_label (`torch.LongTensor` of shape `(batch_size,)`, *optional*): + Labels for computing the next sequence prediction (classification) loss. Input should be a sequence + pair (see `input_ids` docstring) Indices should be in `[0, 1]`: + + - 0 indicates sequence B is a continuation of sequence A, + - 1 indicates sequence B is a random sequence. + kwargs (`Dict[str, any]`, optional, defaults to *{}*): + Used to hide legacy arguments that have been deprecated. + + Returns: + + Example: + + ```python + >>> from transformers import BertTokenizer, BertForPreTraining + >>> import torch + + >>> tokenizer = BertTokenizer.from_pretrained("bert-base-uncased") + >>> model = BertForPreTraining.from_pretrained("bert-base-uncased") + + >>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt") + >>> outputs = model(**inputs) + + >>> prediction_logits = outputs.prediction_logits + >>> seq_relationship_logits = outputs.seq_relationship_logits + ``` + """ + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + sequence_output, pooled_output = outputs[:2] + prediction_scores, seq_relationship_score = self.cls(sequence_output, pooled_output) + + total_loss = None + masked_lm_loss = None + next_sentence_loss = None + if labels is not None and next_sentence_label is not None: + loss_fct = CrossEntropyLoss() + masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1)) + next_sentence_loss = loss_fct(seq_relationship_score.view(-1, 2), next_sentence_label.view(-1)) + total_loss = masked_lm_loss + next_sentence_loss + + if not return_dict: + output = (prediction_scores, seq_relationship_score) + outputs[2:] + return ((total_loss,) + output) if total_loss is not None else output + + return BertForPreTrainingOutput( + loss=total_loss, + mlm_loss=masked_lm_loss, + nsp_loss=next_sentence_loss, + prediction_logits=prediction_scores, + seq_relationship_logits=seq_relationship_score, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + ) + + +@add_start_docstrings( + """Bert Model with a `language modeling` head on top for CLM fine-tuning.""", BERT_START_DOCSTRING +) +class BertLMHeadModel(BertPreTrainedModel): + + _keys_to_ignore_on_load_unexpected = [r"pooler"] + _keys_to_ignore_on_load_missing = [r"position_ids", r"predictions.decoder.bias"] + + def __init__(self, config): + super().__init__(config) + + if not config.is_decoder: + logger.warning("If you want to use `BertLMHeadModel` as a standalone, add `is_decoder=True.`") + + self.bert = BertModel(config, add_pooling_layer=False) + self.cls = BertOnlyMLMHead(config) + + # Initialize weights and apply final processing + self.post_init() + + def get_output_embeddings(self): + return self.cls.predictions.decoder + + def set_output_embeddings(self, new_embeddings): + self.cls.predictions.decoder = new_embeddings + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length")) + @replace_return_docstrings(output_type=CausalLMOutputWithCrossAttentions, config_class=_CONFIG_FOR_DOC) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + encoder_hidden_states=None, + encoder_attention_mask=None, + labels=None, + past_key_values=None, + use_cache=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*): + Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention + if the model is configured as a decoder. + encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*): + Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used + in the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`: + + - 1 for tokens that are **not masked**, + - 0 for tokens that are **masked**. + labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*): + Labels for computing the left-to-right language modeling loss (next word prediction). Indices should be + in `[-100, 0, ..., config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` + are ignored (masked), the loss is only computed for the tokens with labels n `[0, ..., + config.vocab_size]` + past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`): + Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up + decoding. + + If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those + that don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of + all `decoder_input_ids` of shape `(batch_size, sequence_length)`. + use_cache (`bool`, *optional*): + If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding + (see `past_key_values`). + + Returns: + + Example: + + ```python + >>> from transformers import BertTokenizer, BertLMHeadModel, BertConfig + >>> import torch + + >>> tokenizer = BertTokenizer.from_pretrained("bert-base-cased") + >>> config = BertConfig.from_pretrained("bert-base-cased") + >>> config.is_decoder = True + >>> model = BertLMHeadModel.from_pretrained("bert-base-cased", config=config) + + >>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt") + >>> outputs = model(**inputs) + + >>> prediction_logits = outputs.logits + ``` + """ + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + if labels is not None: + use_cache = False + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + encoder_hidden_states=encoder_hidden_states, + encoder_attention_mask=encoder_attention_mask, + past_key_values=past_key_values, + use_cache=use_cache, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + sequence_output = outputs[0] + prediction_scores = self.cls(sequence_output) + + lm_loss = None + if labels is not None: + # we are doing next-token prediction; shift prediction scores and input ids by one + shifted_prediction_scores = prediction_scores[:, :-1, :].contiguous() + labels = labels[:, 1:].contiguous() + loss_fct = CrossEntropyLoss() + lm_loss = loss_fct(shifted_prediction_scores.view(-1, self.config.vocab_size), labels.view(-1)) + + if not return_dict: + output = (prediction_scores,) + outputs[2:] + return ((lm_loss,) + output) if lm_loss is not None else output + + return CausalLMOutputWithCrossAttentions( + loss=lm_loss, + logits=prediction_scores, + past_key_values=outputs.past_key_values, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + cross_attentions=outputs.cross_attentions, + ) + + def prepare_inputs_for_generation(self, input_ids, past=None, attention_mask=None, **model_kwargs): + input_shape = input_ids.shape + # if model is used as a decoder in encoder-decoder model, the decoder attention mask is created on the fly + if attention_mask is None: + attention_mask = input_ids.new_ones(input_shape) + + # cut decoder_input_ids if past is used + if past is not None: + input_ids = input_ids[:, -1:] + + return {"input_ids": input_ids, "attention_mask": attention_mask, "past_key_values": past} + + def _reorder_cache(self, past, beam_idx): + reordered_past = () + for layer_past in past: + reordered_past += (tuple(past_state.index_select(0, beam_idx) for past_state in layer_past),) + return reordered_past + + +@add_start_docstrings("""Bert Model with a `language modeling` head on top.""", BERT_START_DOCSTRING) +class BertForMaskedLM(BertPreTrainedModel): + + _keys_to_ignore_on_load_unexpected = [r"pooler"] + _keys_to_ignore_on_load_missing = [r"position_ids", r"predictions.decoder.bias"] + + def __init__(self, config): + super().__init__(config) + + if config.is_decoder: + logger.warning( + "If you want to use `BertForMaskedLM` make sure `config.is_decoder=False` for " + "bi-directional self-attention." + ) + + self.bert = BertModel(config, add_pooling_layer=False) + self.cls = BertOnlyMLMHead(config) + + # Initialize weights and apply final processing + self.post_init() + + def get_output_embeddings(self): + return self.cls.predictions.decoder + + def set_output_embeddings(self, new_embeddings): + self.cls.predictions.decoder = new_embeddings + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length")) + @add_code_sample_docstrings( + processor_class=_TOKENIZER_FOR_DOC, + checkpoint=_CHECKPOINT_FOR_DOC, + output_type=MaskedLMOutput, + config_class=_CONFIG_FOR_DOC, + ) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + encoder_hidden_states=None, + encoder_attention_mask=None, + labels=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*): + Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ..., + config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the + loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]` + """ + + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + encoder_hidden_states=encoder_hidden_states, + encoder_attention_mask=encoder_attention_mask, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + sequence_output = outputs[0] + prediction_scores = self.cls(sequence_output) + + masked_lm_loss = None + if labels is not None: + loss_fct = CrossEntropyLoss() # -100 index = padding token + masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1)) + + if not return_dict: + output = (prediction_scores,) + outputs[2:] + return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output + + return MaskedLMOutput( + loss=masked_lm_loss, + logits=prediction_scores, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + ) + + def prepare_inputs_for_generation(self, input_ids, attention_mask=None, **model_kwargs): + input_shape = input_ids.shape + effective_batch_size = input_shape[0] + + # add a dummy token + if self.config.pad_token_id is None: + raise ValueError("The PAD token should be defined for generation") + + attention_mask = torch.cat([attention_mask, attention_mask.new_zeros((attention_mask.shape[0], 1))], dim=-1) + dummy_token = torch.full( + (effective_batch_size, 1), self.config.pad_token_id, dtype=torch.long, device=input_ids.device + ) + input_ids = torch.cat([input_ids, dummy_token], dim=1) + + return {"input_ids": input_ids, "attention_mask": attention_mask} + + +@add_start_docstrings( + """Bert Model with a `next sentence prediction (classification)` head on top.""", + BERT_START_DOCSTRING, +) +class BertForNextSentencePrediction(BertPreTrainedModel): + def __init__(self, config): + super().__init__(config) + + self.bert = BertModel(config) + self.cls = BertOnlyNSPHead(config) + + # Initialize weights and apply final processing + self.post_init() + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length")) + @replace_return_docstrings(output_type=NextSentencePredictorOutput, config_class=_CONFIG_FOR_DOC) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + labels=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + **kwargs, + ): + r""" + labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*): + Labels for computing the next sequence prediction (classification) loss. Input should be a sequence pair + (see `input_ids` docstring). Indices should be in `[0, 1]`: + + - 0 indicates sequence B is a continuation of sequence A, + - 1 indicates sequence B is a random sequence. + + Returns: + + Example: + + ```python + >>> from transformers import BertTokenizer, BertForNextSentencePrediction + >>> import torch + + >>> tokenizer = BertTokenizer.from_pretrained("bert-base-uncased") + >>> model = BertForNextSentencePrediction.from_pretrained("bert-base-uncased") + + >>> prompt = "In Italy, pizza served in formal settings, such as at a restaurant, is presented unsliced." + >>> next_sentence = "The sky is blue due to the shorter wavelength of blue light." + >>> encoding = tokenizer(prompt, next_sentence, return_tensors="pt") + + >>> outputs = model(**encoding, labels=torch.LongTensor([1])) + >>> logits = outputs.logits + >>> assert logits[0, 0] < logits[0, 1] # next sentence was random + ``` + """ + + if "next_sentence_label" in kwargs: + warnings.warn( + "The `next_sentence_label` argument is deprecated and will be removed in a future version, use `labels` instead.", + FutureWarning, + ) + labels = kwargs.pop("next_sentence_label") + + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + pooled_output = outputs[1] + + seq_relationship_scores = self.cls(pooled_output) + + next_sentence_loss = None + if labels is not None: + loss_fct = CrossEntropyLoss() + next_sentence_loss = loss_fct(seq_relationship_scores.view(-1, 2), labels.view(-1)) + + if not return_dict: + output = (seq_relationship_scores,) + outputs[2:] + return ((next_sentence_loss,) + output) if next_sentence_loss is not None else output + + return NextSentencePredictorOutput( + loss=next_sentence_loss, + logits=seq_relationship_scores, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + ) + + +@add_start_docstrings( + """ + Bert Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled + output) e.g. for GLUE tasks. + """, + BERT_START_DOCSTRING, +) +class BertForSequenceClassification(BertPreTrainedModel): + def __init__(self, config): + super().__init__(config) + self.num_labels = config.num_labels + self.config = config + + self.bert = BertModel(config) + classifier_dropout = ( + config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob + ) + self.dropout = nn.Dropout(classifier_dropout) + self.classifier = nn.Linear(config.hidden_size, config.num_labels) + + # Initialize weights and apply final processing + self.post_init() + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length")) + @add_code_sample_docstrings( + processor_class=_TOKENIZER_FOR_DOC, + checkpoint=_CHECKPOINT_FOR_DOC, + output_type=SequenceClassifierOutput, + config_class=_CONFIG_FOR_DOC, + ) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + labels=None, + pos_weight=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*): + Labels for computing the sequence classification/regression loss. Indices should be in `[0, ..., + config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If + `config.num_labels > 1` a classification loss is computed (Cross-Entropy). + """ + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + pooled_output = outputs[1] + + pooled_output = self.dropout(pooled_output) + logits = self.classifier(pooled_output) + + loss = None + if labels is not None: + if self.config.problem_type is None: + if self.num_labels == 1: + self.config.problem_type = "regression" + elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int): + self.config.problem_type = "single_label_classification" + else: + self.config.problem_type = "multi_label_classification" + + if self.config.problem_type == "regression": + loss_fct = MSELoss() + if self.num_labels == 1: + loss = loss_fct(logits.squeeze(), labels.squeeze()) + else: + loss = loss_fct(logits, labels) + elif self.config.problem_type == "single_label_classification": + loss_fct = CrossEntropyLoss() + loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1)) + elif self.config.problem_type == "multi_label_classification": + loss_fct = BCEWithLogitsLoss(pos_weight=pos_weight) + loss = loss_fct(logits, labels) + if not return_dict: + output = (logits,) + outputs[2:] + return ((loss,) + output) if loss is not None else output + + return SequenceClassifierOutput( + loss=loss, + logits=logits, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + ) + + +class APARENTLoss(nn.Module): + def __init__(self): + super(APARENTLoss, self).__init__() + + def forward(self, p, y): + for i, n in enumerate(y): + if n == 0.: + y[i] += 1e-3 + elif n == 1.: + y[i] -= 1e-3 + + loss = p * torch.log(p / y) + (1 - p) * torch.log((1 - p) / (1 - y)) + + return loss.mean() + + + +@add_start_docstrings( + """ + Bert Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled + output) e.g. for GLUE tasks. + """, + BERT_START_DOCSTRING, +) +class BertForAPARENTSequenceRegression(BertPreTrainedModel): + def __init__(self, config): + super().__init__(config) + self.num_labels = config.num_labels + self.config = config + + self.bert = BertModel(config) + classifier_dropout = ( + config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob + ) + self.dropout = nn.Dropout(classifier_dropout) + self.classifier = nn.Linear(config.hidden_size, config.num_labels) + + # Initialize weights and apply final processing + self.post_init() + + + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + labels=None, + pos_weight=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*): + Labels for computing the sequence classification/regression loss. Indices should be in `[0, ..., + config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If + `config.num_labels > 1` a classification loss is computed (Cross-Entropy). + """ + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + + if np.all(input_ids[:, -1].detach().cpu().numpy() == np.array([3 for i in range(len(input_ids))])): + pass + else: + print("#########################################NOT ENOUGH TOKENS#######################################") + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + pooled_output = outputs[1] + + pooled_output = self.dropout(pooled_output) + logits = self.classifier(pooled_output) + logits = torch.sigmoid(logits) + + loss = None + if labels is not None: + if self.config.problem_type is None: + if self.num_labels == 1: + self.config.problem_type = "regression" + elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int): + self.config.problem_type = "single_label_classification" + else: + self.config.problem_type = "multi_label_classification" + + if self.config.problem_type == "regression": + loss_fct = MSELoss() #APARENTLoss() + if self.num_labels == 1: + loss = loss_fct(logits.squeeze().float(), labels.squeeze().float()) # if it is not a sparse model then --- labels.squeeze().float(), else --- labels.squeeze().half() + else: + loss = loss_fct(logits, labels) + elif self.config.problem_type == "single_label_classification": + loss_fct = CrossEntropyLoss() + loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1)) + elif self.config.problem_type == "multi_label_classification": + loss_fct = BCEWithLogitsLoss(pos_weight=pos_weight) + loss = loss_fct(logits, labels) + if not return_dict: + output = (logits,) + outputs[2:] + return ((loss,) + output) if loss is not None else output + + return SequenceClassifierOutput( + loss=loss, + logits=logits, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + ) + + +@add_start_docstrings( + """ + Bert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a + softmax) e.g. for RocStories/SWAG tasks. + """, + BERT_START_DOCSTRING, +) +class BertForMultipleChoice(BertPreTrainedModel): + def __init__(self, config): + super().__init__(config) + + self.bert = BertModel(config) + classifier_dropout = ( + config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob + ) + self.dropout = nn.Dropout(classifier_dropout) + self.classifier = nn.Linear(config.hidden_size, 1) + + # Initialize weights and apply final processing + self.post_init() + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")) + @add_code_sample_docstrings( + processor_class=_TOKENIZER_FOR_DOC, + checkpoint=_CHECKPOINT_FOR_DOC, + output_type=MultipleChoiceModelOutput, + config_class=_CONFIG_FOR_DOC, + ) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + labels=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*): + Labels for computing the multiple choice classification loss. Indices should be in `[0, ..., + num_choices-1]` where `num_choices` is the size of the second dimension of the input tensors. (See + `input_ids` above) + """ + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1] + + input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None + attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None + token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None + position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None + inputs_embeds = ( + inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1)) + if inputs_embeds is not None + else None + ) + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + pooled_output = outputs[1] + + pooled_output = self.dropout(pooled_output) + logits = self.classifier(pooled_output) + reshaped_logits = logits.view(-1, num_choices) + + loss = None + if labels is not None: + loss_fct = CrossEntropyLoss() + loss = loss_fct(reshaped_logits, labels) + + if not return_dict: + output = (reshaped_logits,) + outputs[2:] + return ((loss,) + output) if loss is not None else output + + return MultipleChoiceModelOutput( + loss=loss, + logits=reshaped_logits, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + ) + + +@add_start_docstrings( + """ + Bert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for + Named-Entity-Recognition (NER) tasks. + """, + BERT_START_DOCSTRING, +) +class BertForTokenClassification(BertPreTrainedModel): + + _keys_to_ignore_on_load_unexpected = [r"pooler"] + + def __init__(self, config): + super().__init__(config) + self.num_labels = config.num_labels + self.config = config + if getattr(self.config, 'problem_type', None) is None: + self.config.problem_type = 'single_label_classification' + + self.bert = BertModel(config, add_pooling_layer=False) + classifier_dropout = ( + config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob + ) + self.dropout = nn.Dropout(classifier_dropout) + self.classifier = nn.Linear(config.hidden_size, config.num_labels) + + # Initialize weights and apply final processing + self.post_init() + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length")) + @add_code_sample_docstrings( + processor_class=_TOKENIZER_FOR_DOC, + checkpoint=_CHECKPOINT_FOR_DOC, + output_type=TokenClassifierOutput, + config_class=_CONFIG_FOR_DOC, + ) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + labels=None, + labels_mask=None, + pos_weight=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*): + Labels for computing the token classification loss. Indices should be in `[0, ..., config.num_labels - 1]`. + """ + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + sequence_output = outputs[0] + + sequence_output = self.dropout(sequence_output) + logits = self.classifier(sequence_output) + + loss = None + if labels is not None: + if self.config.problem_type == 'single_label_classification': + loss_fct = CrossEntropyLoss() + loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1)) + elif self.config.problem_type == 'multi_label_classification': + if labels_mask is None: + loss_fct = BCEWithLogitsLoss(pos_weight=pos_weight) + loss = loss_fct(logits, labels) + else: + loss_fct = BCEWithLogitsLoss(reduction='none', pos_weight=pos_weight) + loss = loss_fct(logits, labels) + loss = loss * labels_mask.unsqueeze(-1) + loss = loss.sum() / labels_mask.sum() if labels_mask.sum() != 0.0 else 0.0 + + if not return_dict: + output = (logits,) + outputs[2:] + return ((loss,) + output) if loss is not None else output + + return TokenClassifierOutput( + loss=loss, + logits=logits, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + ) + + +@add_start_docstrings( + """ + Bert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear + layers on top of the hidden-states output to compute `span start logits` and `span end logits`). + """, + BERT_START_DOCSTRING, +) +class BertForQuestionAnswering(BertPreTrainedModel): + + _keys_to_ignore_on_load_unexpected = [r"pooler"] + + def __init__(self, config): + super().__init__(config) + self.num_labels = config.num_labels + + self.bert = BertModel(config, add_pooling_layer=False) + self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels) + + # Initialize weights and apply final processing + self.post_init() + + @add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length")) + @add_code_sample_docstrings( + processor_class=_TOKENIZER_FOR_DOC, + checkpoint=_CHECKPOINT_FOR_DOC, + output_type=QuestionAnsweringModelOutput, + config_class=_CONFIG_FOR_DOC, + ) + def forward( + self, + input_ids=None, + attention_mask=None, + token_type_ids=None, + position_ids=None, + head_mask=None, + inputs_embeds=None, + start_positions=None, + end_positions=None, + output_attentions=None, + output_hidden_states=None, + return_dict=None, + ): + r""" + start_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*): + Labels for position (index) of the start of the labelled span for computing the token classification loss. + Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence + are not taken into account for computing the loss. + end_positions (`torch.LongTensor` of shape `(batch_size,)`, *optional*): + Labels for position (index) of the end of the labelled span for computing the token classification loss. + Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence + are not taken into account for computing the loss. + """ + return_dict = return_dict if return_dict is not None else self.config.use_return_dict + + outputs = self.bert( + input_ids, + attention_mask=attention_mask, + token_type_ids=token_type_ids, + position_ids=position_ids, + head_mask=head_mask, + inputs_embeds=inputs_embeds, + output_attentions=output_attentions, + output_hidden_states=output_hidden_states, + return_dict=return_dict, + ) + + sequence_output = outputs[0] + + logits = self.qa_outputs(sequence_output) + start_logits, end_logits = logits.split(1, dim=-1) + start_logits = start_logits.squeeze(-1).contiguous() + end_logits = end_logits.squeeze(-1).contiguous() + + total_loss = None + if start_positions is not None and end_positions is not None: + # If we are on multi-GPU, split add a dimension + if len(start_positions.size()) > 1: + start_positions = start_positions.squeeze(-1) + if len(end_positions.size()) > 1: + end_positions = end_positions.squeeze(-1) + # sometimes the start/end positions are outside our model inputs, we ignore these terms + ignored_index = start_logits.size(1) + start_positions = start_positions.clamp(0, ignored_index) + end_positions = end_positions.clamp(0, ignored_index) + + loss_fct = CrossEntropyLoss(ignore_index=ignored_index) + start_loss = loss_fct(start_logits, start_positions) + end_loss = loss_fct(end_logits, end_positions) + total_loss = (start_loss + end_loss) / 2 + + if not return_dict: + output = (start_logits, end_logits) + outputs[2:] + return ((total_loss,) + output) if total_loss is not None else output + + return QuestionAnsweringModelOutput( + loss=total_loss, + start_logits=start_logits, + end_logits=end_logits, + hidden_states=outputs.hidden_states, + attentions=outputs.attentions, + ) + + +# todo: move to separate file with other position embeddings? +# https://github.com/EleutherAI/gpt-neox/blob/8229d921d329266323706c01dd6778fa71649ac7/megatron/model/positional_embeddings.py#L24 +# https://blog.eleuther.ai/rotary-embeddings/ +class RotaryEmbedding(torch.nn.Module): + def __init__(self, dim, base=10000): + super().__init__() + inv_freq = 1.0 / (base ** (torch.arange(0, dim, 2).float() / dim)) + self.register_buffer("inv_freq", inv_freq) + self.seq_len_cached = None + self.cos_cached = None + self.sin_cached = None + + def forward(self, x, seq_dim=1, seq_len=None): + if seq_len is None: + seq_len = x.shape[seq_dim] + if seq_len != self.seq_len_cached: + self.seq_len_cached = seq_len + t = torch.arange(seq_len, device=x.device).type_as(self.inv_freq) + freqs = torch.einsum("i,j->ij", t, self.inv_freq) + emb = torch.cat((freqs, freqs), dim=-1).to(x.device) + self.cos_cached = emb.cos()[None, None, :, :] + self.sin_cached = emb.sin()[None, None, :, :] + return self.cos_cached, self.sin_cached + + +def rotate_half(x): + x1, x2 = x[..., : x.shape[-1] // 2], x[..., x.shape[-1] // 2:] + return torch.cat((-x2, x1), dim=x1.ndim - 1) # dim=-1 triggers a bug in earlier torch versions + + +def apply_rotary_pos_emb(q, k, cos, sin, offset: int = 0): + cos, sin = cos[:, :, offset: q.shape[2] + offset, :], sin[:, :, offset: q.shape[2] + offset, :] + return (q * cos) + (rotate_half(q) * sin), (k * cos) + (rotate_half(k) * sin)